16S rRNA (guanine(966)-N(2))-methyltransferase RsmD [Lawsonia intracellularis]
RsmD family RNA methyltransferase( domain architecture ID 10002368)
RsmD family RNA methyltransferase similar to 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD, which specifically methylates the guanine in position 966 of 16S rRNA in the assembled 30S particle
List of domain hits
Name | Accession | Description | Interval | E-value | ||||
RsmD | COG0742 | 16S rRNA G966 N2-methylase RsmD [Translation, ribosomal structure and biogenesis]; 16S rRNA ... |
1-185 | 6.84e-72 | ||||
16S rRNA G966 N2-methylase RsmD [Translation, ribosomal structure and biogenesis]; 16S rRNA G966 N2-methylase RsmD is part of the Pathway/BioSystem: 16S rRNA modification : Pssm-ID: 440505 [Multi-domain] Cd Length: 183 Bit Score: 215.33 E-value: 6.84e-72
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Name | Accession | Description | Interval | E-value | ||||
RsmD | COG0742 | 16S rRNA G966 N2-methylase RsmD [Translation, ribosomal structure and biogenesis]; 16S rRNA ... |
1-185 | 6.84e-72 | ||||
16S rRNA G966 N2-methylase RsmD [Translation, ribosomal structure and biogenesis]; 16S rRNA G966 N2-methylase RsmD is part of the Pathway/BioSystem: 16S rRNA modification Pssm-ID: 440505 [Multi-domain] Cd Length: 183 Bit Score: 215.33 E-value: 6.84e-72
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Cons_hypoth95 | pfam03602 | Conserved hypothetical protein 95; |
1-185 | 3.14e-52 | ||||
Conserved hypothetical protein 95; Pssm-ID: 427391 [Multi-domain] Cd Length: 179 Bit Score: 165.10 E-value: 3.14e-52
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TIGR00095 | TIGR00095 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD; This model represents a family of ... |
2-185 | 2.09e-39 | ||||
16S rRNA (guanine(966)-N(2))-methyltransferase RsmD; This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. [Protein synthesis, tRNA and rRNA base modification] Pssm-ID: 188022 [Multi-domain] Cd Length: 190 Bit Score: 132.92 E-value: 2.09e-39
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rsmD | PRK10909 | 16S rRNA m(2)G966-methyltransferase; Provisional |
1-157 | 9.65e-33 | ||||
16S rRNA m(2)G966-methyltransferase; Provisional Pssm-ID: 236793 Cd Length: 199 Bit Score: 115.97 E-value: 9.65e-33
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AdoMet_MTases | cd02440 | S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ... |
48-155 | 4.17e-06 | ||||
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Pssm-ID: 100107 [Multi-domain] Cd Length: 107 Bit Score: 43.96 E-value: 4.17e-06
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Name | Accession | Description | Interval | E-value | ||||
RsmD | COG0742 | 16S rRNA G966 N2-methylase RsmD [Translation, ribosomal structure and biogenesis]; 16S rRNA ... |
1-185 | 6.84e-72 | ||||
16S rRNA G966 N2-methylase RsmD [Translation, ribosomal structure and biogenesis]; 16S rRNA G966 N2-methylase RsmD is part of the Pathway/BioSystem: 16S rRNA modification Pssm-ID: 440505 [Multi-domain] Cd Length: 183 Bit Score: 215.33 E-value: 6.84e-72
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Cons_hypoth95 | pfam03602 | Conserved hypothetical protein 95; |
1-185 | 3.14e-52 | ||||
Conserved hypothetical protein 95; Pssm-ID: 427391 [Multi-domain] Cd Length: 179 Bit Score: 165.10 E-value: 3.14e-52
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TIGR00095 | TIGR00095 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD; This model represents a family of ... |
2-185 | 2.09e-39 | ||||
16S rRNA (guanine(966)-N(2))-methyltransferase RsmD; This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. [Protein synthesis, tRNA and rRNA base modification] Pssm-ID: 188022 [Multi-domain] Cd Length: 190 Bit Score: 132.92 E-value: 2.09e-39
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rsmD | PRK10909 | 16S rRNA m(2)G966-methyltransferase; Provisional |
1-157 | 9.65e-33 | ||||
16S rRNA m(2)G966-methyltransferase; Provisional Pssm-ID: 236793 Cd Length: 199 Bit Score: 115.97 E-value: 9.65e-33
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TrmA | COG2265 | tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure ... |
48-124 | 5.06e-09 | ||||
tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure and biogenesis]; tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family is part of the Pathway/BioSystem: tRNA modification Pssm-ID: 441866 [Multi-domain] Cd Length: 377 Bit Score: 54.41 E-value: 5.06e-09
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COG2263 | COG2263 | Predicted RNA methylase [General function prediction only]; |
48-129 | 1.38e-07 | ||||
Predicted RNA methylase [General function prediction only]; Pssm-ID: 441864 [Multi-domain] Cd Length: 199 Bit Score: 49.52 E-value: 1.38e-07
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COG4076 | COG4076 | Predicted RNA methylase [General function prediction only]; |
48-103 | 8.37e-07 | ||||
Predicted RNA methylase [General function prediction only]; Pssm-ID: 443253 [Multi-domain] Cd Length: 230 Bit Score: 47.72 E-value: 8.37e-07
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AdoMet_MTases | cd02440 | S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ... |
48-155 | 4.17e-06 | ||||
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Pssm-ID: 100107 [Multi-domain] Cd Length: 107 Bit Score: 43.96 E-value: 4.17e-06
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RlmK | COG1092 | 23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI [Translation, ribosomal structure ... |
49-124 | 9.47e-06 | ||||
23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI [Translation, ribosomal structure and biogenesis]; 23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI is part of the Pathway/BioSystem: 23S rRNA modification Pssm-ID: 440709 [Multi-domain] Cd Length: 392 Bit Score: 44.79 E-value: 9.47e-06
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Trm11 | COG1041 | tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]; tRNA G10 ... |
35-126 | 1.12e-04 | ||||
tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]; tRNA G10 N-methylase Trm11 is part of the Pathway/BioSystem: tRNA modification Pssm-ID: 440663 [Multi-domain] Cd Length: 172 Bit Score: 40.70 E-value: 1.12e-04
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PRK14967 | PRK14967 | putative methyltransferase; Provisional |
21-125 | 2.86e-04 | ||||
putative methyltransferase; Provisional Pssm-ID: 184931 [Multi-domain] Cd Length: 223 Bit Score: 40.04 E-value: 2.86e-04
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HemK | COG2890 | Methylase of polypeptide chain release factors [Translation, ribosomal structure and ... |
48-125 | 4.21e-04 | ||||
Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]; Pssm-ID: 442135 [Multi-domain] Cd Length: 282 Bit Score: 39.75 E-value: 4.21e-04
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Cyt_C5_DNA_methylase | cd00315 | Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many ... |
48-86 | 4.34e-04 | ||||
Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. Pssm-ID: 238192 [Multi-domain] Cd Length: 275 Bit Score: 39.91 E-value: 4.34e-04
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cbiT | PRK00377 | cobalt-precorrin-6Y C(15)-methyltransferase; Provisional |
48-153 | 4.81e-04 | ||||
cobalt-precorrin-6Y C(15)-methyltransferase; Provisional Pssm-ID: 234740 Cd Length: 198 Bit Score: 39.40 E-value: 4.81e-04
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hemK_fam | TIGR00536 | HemK family putative methylases; The gene hemK from E. coli was found to contribute to heme ... |
22-125 | 1.18e-03 | ||||
HemK family putative methylases; The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase. Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. [Protein fate, Protein modification and repair] Pssm-ID: 273125 [Multi-domain] Cd Length: 284 Bit Score: 38.49 E-value: 1.18e-03
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Trm5 | COG2520 | tRNA G37 N-methylase Trm5 [Translation, ribosomal structure and biogenesis]; tRNA G37 ... |
48-143 | 1.23e-03 | ||||
tRNA G37 N-methylase Trm5 [Translation, ribosomal structure and biogenesis]; tRNA G37 N-methylase Trm5 is part of the Pathway/BioSystem: tRNA modification Pssm-ID: 442010 [Multi-domain] Cd Length: 333 Bit Score: 38.69 E-value: 1.23e-03
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Methyltransf_15 | pfam09445 | RNA cap guanine-N2 methyltransferase; RNA cap guanine-N2 methyltransferases such as ... |
46-127 | 2.86e-03 | ||||
RNA cap guanine-N2 methyltransferase; RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe Tgs1 and Giardia lamblia Tgs2 catalyze methylation of the exocyclic N2 amine of 7-methylguanosine. Pssm-ID: 370496 Cd Length: 165 Bit Score: 36.93 E-value: 2.86e-03
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CobL | COG2242 | Precorrin-6B methylase 2 [Coenzyme transport and metabolism]; Precorrin-6B methylase 2 is part ... |
48-100 | 3.77e-03 | ||||
Precorrin-6B methylase 2 [Coenzyme transport and metabolism]; Precorrin-6B methylase 2 is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis Pssm-ID: 441843 [Multi-domain] Cd Length: 403 Bit Score: 37.07 E-value: 3.77e-03
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DNA_methylase | pfam00145 | C-5 cytosine-specific DNA methylase; |
48-86 | 4.82e-03 | ||||
C-5 cytosine-specific DNA methylase; Pssm-ID: 395093 [Multi-domain] Cd Length: 324 Bit Score: 36.91 E-value: 4.82e-03
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Blast search parameters | ||||
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