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Conserved domains on  [gi|499842281|ref|WP_011523015|]
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DoxX family protein [Candidatus Korobacter versatilis]

Protein Classification

DoxX family protein( domain architecture ID 10611814)

DoxX family protein, an inner membrane protein, similar to Bacillus subtilis uncharacterized membrane protein YdgD

Gene Ontology:  GO:0005886
PubMed:  26067605

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DoxX_2 pfam13564
DoxX-like family; This family of uncharacterized proteins are related to DoxX pfam07681.
 25-123 1.87e-12

DoxX-like family; This family of uncharacterized proteins are related to DoxX pfam07681.


:

Pssm-ID: 433313  Cd Length: 103  Bit Score: 59.12  E-value: 1.87e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499842281   25 VLSSVAILFLLFDGLMKVILEPHVVAASGPLGFDPPTIVRIGAILLVCTT-----LYAIPRTSVLGAMLLTGYLGGAVVT 99
Cdd:pfam13564   1 ILTGLLAAFFLASGVAKLARPPEVVAGMAWLGFPLGFVRILGVLELAGALglllpLVGAPRLTPLAAAGLALLMIGAIAT 80

                          90       100
                  ....*....|....*....|....
gi 499842281  100 NLRVHSVAfNTIFPVIFGIVVWAG 123
Cdd:pfam13564  81 HLRRGDPP-HVAFPAVLLALAAAV 103
 
Name Accession Description Interval E-value
DoxX_2 pfam13564
DoxX-like family; This family of uncharacterized proteins are related to DoxX pfam07681.
 25-123 1.87e-12

DoxX-like family; This family of uncharacterized proteins are related to DoxX pfam07681.


Pssm-ID: 433313  Cd Length: 103  Bit Score: 59.12  E-value: 1.87e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499842281   25 VLSSVAILFLLFDGLMKVILEPHVVAASGPLGFDPPTIVRIGAILLVCTT-----LYAIPRTSVLGAMLLTGYLGGAVVT 99
Cdd:pfam13564   1 ILTGLLAAFFLASGVAKLARPPEVVAGMAWLGFPLGFVRILGVLELAGALglllpLVGAPRLTPLAAAGLALLMIGAIAT 80

                          90       100
                  ....*....|....*....|....
gi 499842281  100 NLRVHSVAfNTIFPVIFGIVVWAG 123
Cdd:pfam13564  81 HLRRGDPP-HVAFPAVLLALAAAV 103
 
Name Accession Description Interval E-value
DoxX_2 pfam13564
DoxX-like family; This family of uncharacterized proteins are related to DoxX pfam07681.
 25-123 1.87e-12

DoxX-like family; This family of uncharacterized proteins are related to DoxX pfam07681.


Pssm-ID: 433313  Cd Length: 103  Bit Score: 59.12  E-value: 1.87e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499842281   25 VLSSVAILFLLFDGLMKVILEPHVVAASGPLGFDPPTIVRIGAILLVCTT-----LYAIPRTSVLGAMLLTGYLGGAVVT 99
Cdd:pfam13564   1 ILTGLLAAFFLASGVAKLARPPEVVAGMAWLGFPLGFVRILGVLELAGALglllpLVGAPRLTPLAAAGLALLMIGAIAT 80

                          90       100
                  ....*....|....*....|....
gi 499842281  100 NLRVHSVAfNTIFPVIFGIVVWAG 123
Cdd:pfam13564  81 HLRRGDPP-HVAFPAVLLALAAAV 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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