|
Name |
Accession |
Description |
Interval |
E-value |
| XylH |
COG4214 |
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]; |
28-400 |
1.24e-148 |
|
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443360 [Multi-domain] Cd Length: 393 Bit Score: 426.45 E-value: 1.24e-148
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 28 KFGATARAYTMAAALVAIWIVFEYTTHGVFLNARNFSNLTRQMAVTGVLSVGMLMVIVIGEIDLSVGSLVGLTGMAAALV 107
Cdd:COG4214 17 LLGGDLRSLGMIIALVVIWIVFQILTGGTFLTPRNLSNLLLQNSYIGILAIGMVLVILLGHIDLSVGSVSGFVGAVAAVL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 108 QANNAWGVTATLTIALVFGLIIGCAQGILTSYARVPSFIVTLGGLLAWRGVTKAISAGQTIPIQLYNFNSIGQSYLDKPI 187
Cdd:COG4214 97 MVNWGLPWWLAILAALLVGALIGAWQGFWVAYVGIPSFIVTLAGMLAFRGLTLLVLGGGTIAPFDPTFQAIGNGFLPDIL 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 188 ---GWAFAALAVVAIIVTQLRWQSSRKRLGLSTLSSTQLALRIGIPSVLSVALVAMLNAYEGIPVPVLLFLIVALAGAFV 264
Cdd:COG4214 177 gtlSWVLGAVAVAAYVALQLRSRRRRRRYGLPVEPLWLFVLKLALLAVLILGAVYLLNSYRGIPIVVLILLVLVVVYTFV 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 265 MSNTTWGRYMYAVGGNREAARLSGINTRALTIATFGVLGLLAGLAGVIYTARVGSASPDAGLLLELDAIAACVIGGASLM 344
Cdd:COG4214 257 LTRTVFGRHIYAVGGNPEAARLSGINVRRVTFSVFVNMGVLAALAGIVFAARLNSATPSAGTGFELDAIAAAVIGGTSLF 336
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 499840976 345 GGRGTIAGACMGALFMASLDNGMSLKNVPDFTQDIVKGTILVAAVALDMLSRKRNG 400
Cdd:COG4214 337 GGVGTVYGAVIGALVMGSLNNGMSLLGVDSDWQQIVKGLVLLLAVAFDVLSRRRRG 392
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
34-398 |
2.79e-99 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 300.14 E-value: 2.79e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 34 RAYTMAAALVAIWIVFEYTTHGVFLNARNFSNLTRQMAVTGVLSVGMLMVIVIGEIDLSVGSLVGLTGMAAALVQANNAW 113
Cdd:NF040906 3 RQYGMLIALVAIVVLFQILTGGILLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNWGM 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 114 GVTATLTIALVFGLIIGCAQGILTSYARVPSFIVTLGGLLAWRGVTKAISAGQTIPIQLYNFNSIGQSYLDKPIGW---- 189
Cdd:NF040906 83 PWWLAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGQSIGPFPDGFQKISSGFLPDLFGGtglh 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 190 ----AFAALAVVAIIVTQLRWQSSRKRLGLSTLSSTQLALRIGIPSVLSVALVAMLNAYEGIPVPVLLFLIVALAGAFVM 265
Cdd:NF040906 163 lltlLLGVLAAAALVWSQLRGRRRRIKYGLEVEPMALFIAKLVLIAAAILFFTYLLASYRGLPNVLIILGVLILVYSFVT 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 266 SNTTWGRYMYAVGGNREAARLSGINTRALTIATFGVLGLLAGLAGVIYTARVGSASPDAGLLLELDAIAACVIGGASLMG 345
Cdd:NF040906 243 NRTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASASG 322
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 499840976 346 GRGTIAGACMGALFMASLDNGMSLKNVPDFTQDIVKGTILVAAVALDMLSRKR 398
Cdd:NF040906 323 GVGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAVAFDVYNKRK 375
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
70-392 |
1.01e-73 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 230.76 E-value: 1.01e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 70 MAVTGVLSVGMLMVIVIGEIDLSVGSLVGLTGMAAALVQANNAWGVTATLTIALVFGLIIGCAQGILTSYARVPSFIVTL 149
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 150 GGLLAWRGVTKAISAGQTIpiqlynfnsigqsyldkpigwafaalavvAIIVTQLRWQSSRKRLGlstlsstqlalrigi 229
Cdd:cd06579 81 GTMFILRGLALLITGGRPI-----------------------------SGLPPLFSFFLGGGLIL--------------- 116
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 230 psvlsvalvamlnayeGIPVPVLLFLIVALAGAFVMSNTTWGRYMYAVGGNREAARLSGINTRALTIATFGVLGLLAGLA 309
Cdd:cd06579 117 ----------------GIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARLSGINVRRVKILAYVLSGLLAGLA 180
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 310 GVIYTARVGSASPDAGLLLELDAIAACVIGGASLMGGRGTIAGACMGALFMASLDNGMSLKNVPDFTQDIVKGTILVAAV 389
Cdd:cd06579 181 GILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNGLNLLGVSSFWQQIVKGAILLLAV 260
|
...
gi 499840976 390 ALD 392
Cdd:cd06579 261 ALD 263
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
57-392 |
4.55e-52 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 176.45 E-value: 4.55e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 57 FLNARNFSNLTRQMAVTGVLSVGMLMVIVIGEIDLSVGSLVGLTG-MAAALVQANnaWGVTATLTIALVFGLIIGCAQGI 135
Cdd:PRK09512 39 FFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGaVAASIVGIE--VNALVAVPAALALGAAIGAVTGV 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 136 LTSYARVPSFIVTLGGLLAWRGVTKAISAGQTIpiqlynfnSIGQSYLDKPIGWafaalavvaiivtqlrwqssrkrlgl 215
Cdd:PRK09512 117 IVAKGKVQAFIATLVMMLLLRGVTMVYTDGSPI--------NTGFTDNADLFGW-------------------------- 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 216 stlsstqlalrIGIPSVLsvalvamlnayeGIPVPVLLFLIVALAGAFVMSNTTWGRYMYAVGGNREAARLSGINTRALT 295
Cdd:PRK09512 163 -----------FGIGRPL------------GIPTPVWIMAIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVK 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 296 IATFGVLGLLAGLAGVIYTARVGSASPDAGLLLELDAIAACVIGGASLMGGRGTIAGACMGALFMASLDNGMSLKNVPDF 375
Cdd:PRK09512 220 IIVYALCGLLAALAGIIEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSY 299
|
330
....*....|....*..
gi 499840976 376 TQDIVKGTILVAAVALD 392
Cdd:PRK09512 300 YQMIVKAVVILLAVLVD 316
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
62-389 |
8.03e-20 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 88.47 E-value: 8.03e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 62 NFSNLTRQMAVTGVLSVGMLMVIVI-GEIDLSVGSLVGLTGMAAALVQANNAWGVTATLTIALVFGLIIGCAQGILTSYA 140
Cdd:pfam02653 1 NILNILTLASIYAIAALGLTLIYGIaGVINLGHGGFMMLGAYVAAMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 141 RVPSFIVTLGGLLAWRGVTkaisagqtipiQLYNFNSIGQSYLDKPIGWAFAALAVVAIIVTQLRWqssrkrlglstlss 220
Cdd:pfam02653 81 KINEVIITLLLNLAALGLA-----------LFLVTGILGGEGGTSGITGPSGFPGAFLSFAFAFIF-------------- 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 221 tqlalrigipsvlsvalvamlnayegipvpvLLFLIVALAGAFVMSNTTWGRYMYAVGGNREAARLSGINTRALTIATFG 300
Cdd:pfam02653 136 -------------------------------LLALLLVLALWLLLYRTKFGRALRAVGENEEAARAAGINVKKLKLLTFV 184
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 301 VLGLLAGLAGVIYTARVGSASP-DAGLLLELDAIAACVIGGAslmggrGTIAGACMGALFMASLDNGMS-LKNVPDFTQD 378
Cdd:pfam02653 185 ISGALAGLAGALLALYTGVVPPsNFGVGLGLDAIAAVVLGGA------GSPIGVVIGSLIIGLVQSLGLgALGSPPELSL 258
|
330
....*....|.
gi 499840976 379 IVKGTILVAAV 389
Cdd:pfam02653 259 LVLGALLILVL 269
|
|
| urea_trans_UrtB |
TIGR03409 |
urea ABC transporter, permease protein UrtB; Members of this protein family are ABC ... |
223-363 |
2.52e-08 |
|
urea ABC transporter, permease protein UrtB; Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 200272 [Multi-domain] Cd Length: 291 Bit Score: 54.94 E-value: 2.52e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 223 LALRIGIPSVLSVALV---AMLNAYEGIPVpVLLFLIVALAGAFVMSNTTWGRYMYAVGGNREAARLSGINTRALTIATF 299
Cdd:TIGR03409 118 PNVPVTAPEWLSGGLEitgALSLPYNRLFI-IVLALAVLLALALLLYRTRLGLRVRAVTQNRSMAAALGINTRRVDALTF 196
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 499840976 300 GVLGLLAGLAGVIYTaRVGSASPDAGLLLELDAIAACVIGGAslmggrGTIAGACMGALFMASL 363
Cdd:TIGR03409 197 ALGSGIAGVAGVALT-LIGNVGPTLGQLYIVDSFLVVVFGGV------GSLWGTVVAAFGLGVL 253
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| XylH |
COG4214 |
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]; |
28-400 |
1.24e-148 |
|
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443360 [Multi-domain] Cd Length: 393 Bit Score: 426.45 E-value: 1.24e-148
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 28 KFGATARAYTMAAALVAIWIVFEYTTHGVFLNARNFSNLTRQMAVTGVLSVGMLMVIVIGEIDLSVGSLVGLTGMAAALV 107
Cdd:COG4214 17 LLGGDLRSLGMIIALVVIWIVFQILTGGTFLTPRNLSNLLLQNSYIGILAIGMVLVILLGHIDLSVGSVSGFVGAVAAVL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 108 QANNAWGVTATLTIALVFGLIIGCAQGILTSYARVPSFIVTLGGLLAWRGVTKAISAGQTIPIQLYNFNSIGQSYLDKPI 187
Cdd:COG4214 97 MVNWGLPWWLAILAALLVGALIGAWQGFWVAYVGIPSFIVTLAGMLAFRGLTLLVLGGGTIAPFDPTFQAIGNGFLPDIL 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 188 ---GWAFAALAVVAIIVTQLRWQSSRKRLGLSTLSSTQLALRIGIPSVLSVALVAMLNAYEGIPVPVLLFLIVALAGAFV 264
Cdd:COG4214 177 gtlSWVLGAVAVAAYVALQLRSRRRRRRYGLPVEPLWLFVLKLALLAVLILGAVYLLNSYRGIPIVVLILLVLVVVYTFV 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 265 MSNTTWGRYMYAVGGNREAARLSGINTRALTIATFGVLGLLAGLAGVIYTARVGSASPDAGLLLELDAIAACVIGGASLM 344
Cdd:COG4214 257 LTRTVFGRHIYAVGGNPEAARLSGINVRRVTFSVFVNMGVLAALAGIVFAARLNSATPSAGTGFELDAIAAAVIGGTSLF 336
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 499840976 345 GGRGTIAGACMGALFMASLDNGMSLKNVPDFTQDIVKGTILVAAVALDMLSRKRNG 400
Cdd:COG4214 337 GGVGTVYGAVIGALVMGSLNNGMSLLGVDSDWQQIVKGLVLLLAVAFDVLSRRRRG 392
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
34-398 |
2.79e-99 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 300.14 E-value: 2.79e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 34 RAYTMAAALVAIWIVFEYTTHGVFLNARNFSNLTRQMAVTGVLSVGMLMVIVIGEIDLSVGSLVGLTGMAAALVQANNAW 113
Cdd:NF040906 3 RQYGMLIALVAIVVLFQILTGGILLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNWGM 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 114 GVTATLTIALVFGLIIGCAQGILTSYARVPSFIVTLGGLLAWRGVTKAISAGQTIPIQLYNFNSIGQSYLDKPIGW---- 189
Cdd:NF040906 83 PWWLAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGQSIGPFPDGFQKISSGFLPDLFGGtglh 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 190 ----AFAALAVVAIIVTQLRWQSSRKRLGLSTLSSTQLALRIGIPSVLSVALVAMLNAYEGIPVPVLLFLIVALAGAFVM 265
Cdd:NF040906 163 lltlLLGVLAAAALVWSQLRGRRRRIKYGLEVEPMALFIAKLVLIAAAILFFTYLLASYRGLPNVLIILGVLILVYSFVT 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 266 SNTTWGRYMYAVGGNREAARLSGINTRALTIATFGVLGLLAGLAGVIYTARVGSASPDAGLLLELDAIAACVIGGASLMG 345
Cdd:NF040906 243 NRTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASASG 322
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 499840976 346 GRGTIAGACMGALFMASLDNGMSLKNVPDFTQDIVKGTILVAAVALDMLSRKR 398
Cdd:NF040906 323 GVGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAVAFDVYNKRK 375
|
|
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
20-400 |
4.17e-87 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 266.97 E-value: 4.17e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 20 TSNLPPQVKFGATARAYTMAAALVAIWIVFEYTTHGvFLNARNFSNLTRQMAVTGVLSVGMLMVIVIGEIDLSVGSLVGL 99
Cdd:COG1172 3 ATTTTARSLLRRLLPELGLLLALVLLLVVFSILSPG-FLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 100 TGMAAALVQANNAWGVTATLTIALVFGLIIGCAQGILTSYARVPSFIVTLGGLLAWRGVTKAISAGQTIPIQLYNFNSIG 179
Cdd:COG1172 82 SGVVAALLLVALGLPILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISGLPDAFRALG 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 180 QSYLDkpigwafaalavvaiivtqlrwqssrkrlglstlsstqlalrigipsvlsvalvamlnayeGIPVPVLLFLIVAL 259
Cdd:COG1172 162 QGSLL-------------------------------------------------------------GIPVPVLIALVVAL 180
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 260 AGAFVMSNTTWGRYMYAVGGNREAARLSGINTRALTIATFGVLGLLAGLAGVIYTARVGSASPDAGLLLELDAIAACVIG 339
Cdd:COG1172 181 VAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPNAGSGYELDAIAAVVIG 260
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 499840976 340 GASLMGGRGTIAGACMGALFMASLDNGMSLKNVPDFTQDIVKGTILVAAVALDMLSRKRNG 400
Cdd:COG1172 261 GTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLRRRRRA 321
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
70-392 |
1.01e-73 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 230.76 E-value: 1.01e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 70 MAVTGVLSVGMLMVIVIGEIDLSVGSLVGLTGMAAALVQANNAWGVTATLTIALVFGLIIGCAQGILTSYARVPSFIVTL 149
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 150 GGLLAWRGVTKAISAGQTIpiqlynfnsigqsyldkpigwafaalavvAIIVTQLRWQSSRKRLGlstlsstqlalrigi 229
Cdd:cd06579 81 GTMFILRGLALLITGGRPI-----------------------------SGLPPLFSFFLGGGLIL--------------- 116
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 230 psvlsvalvamlnayeGIPVPVLLFLIVALAGAFVMSNTTWGRYMYAVGGNREAARLSGINTRALTIATFGVLGLLAGLA 309
Cdd:cd06579 117 ----------------GIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARLSGINVRRVKILAYVLSGLLAGLA 180
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 310 GVIYTARVGSASPDAGLLLELDAIAACVIGGASLMGGRGTIAGACMGALFMASLDNGMSLKNVPDFTQDIVKGTILVAAV 389
Cdd:cd06579 181 GILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNGLNLLGVSSFWQQIVKGAILLLAV 260
|
...
gi 499840976 390 ALD 392
Cdd:cd06579 261 ALD 263
|
|
| COG4158 |
COG4158 |
Predicted ABC-type sugar transport system, permease component [General function prediction ... |
28-400 |
1.73e-61 |
|
Predicted ABC-type sugar transport system, permease component [General function prediction only];
Pssm-ID: 443324 Cd Length: 334 Bit Score: 201.31 E-value: 1.73e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 28 KFGATARAYTMAAALVAIWIVFEYTTHGvFLNARNFSNLTRQMAVTGVLSVGMLMVIVIGEIDLSVGSLVGLTGMAAALV 107
Cdd:COG4158 22 RLRSLLQAVGMLPVLILLCIGFELLTPN-FLTVQNLSNIARQASINIVLAAGMTFVILTGGIDLSVGSILAASAVVAVLV 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 108 QANNAWGVTATLTiALVFGLIIGCAQGILTSYARVPSFIVTLGGLLAWRGVTKAISAGQTIPIQLYNFNSIGQSYLdkpi 187
Cdd:COG4158 101 SLLPGLGLLGIPA-ALLVGLLFGLINGLLIAFLKLPPFIVTLGSLTALRGAARLLANGTTVFNPDLPFAWIGNGYL---- 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 188 gwafaalavvaiivtqlrwqssrkrlglstlsstqlalrigipsvlsvalvamlnayEGIPVPVLLFLIVALAGAFVMSN 267
Cdd:COG4158 176 ---------------------------------------------------------LGIPWLVVIALAVVLASWFILRR 198
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 268 TTWGRYMYAVGGNREAARLSGINTRALTIATFGVLGLLAGLAGVIYTARVGSASP-DAGLLLELDAIAACVIGGASLMGG 346
Cdd:COG4158 199 TVLGVHIYAVGGNAQAARLTGIKVWRVLLFVYAVSGLLAGLGGVMSAARLYAANGlQLGQGYELDAIAAVILGGTSFVGG 278
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 499840976 347 RGTIAGACMGALFMASLDNGMSLKNVPDFTQDIVKGTILVAAVALDMLSRKRNG 400
Cdd:COG4158 279 IGSIWGTLIGALIIAVLNNGLILLGVSDFWQFIIKGLVIIIAVALDRYRQRGSA 332
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
57-392 |
4.55e-52 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 176.45 E-value: 4.55e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 57 FLNARNFSNLTRQMAVTGVLSVGMLMVIVIGEIDLSVGSLVGLTG-MAAALVQANnaWGVTATLTIALVFGLIIGCAQGI 135
Cdd:PRK09512 39 FFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGaVAASIVGIE--VNALVAVPAALALGAAIGAVTGV 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 136 LTSYARVPSFIVTLGGLLAWRGVTKAISAGQTIpiqlynfnSIGQSYLDKPIGWafaalavvaiivtqlrwqssrkrlgl 215
Cdd:PRK09512 117 IVAKGKVQAFIATLVMMLLLRGVTMVYTDGSPI--------NTGFTDNADLFGW-------------------------- 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 216 stlsstqlalrIGIPSVLsvalvamlnayeGIPVPVLLFLIVALAGAFVMSNTTWGRYMYAVGGNREAARLSGINTRALT 295
Cdd:PRK09512 163 -----------FGIGRPL------------GIPTPVWIMAIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVK 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 296 IATFGVLGLLAGLAGVIYTARVGSASPDAGLLLELDAIAACVIGGASLMGGRGTIAGACMGALFMASLDNGMSLKNVPDF 375
Cdd:PRK09512 220 IIVYALCGLLAALAGIIEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSY 299
|
330
....*....|....*..
gi 499840976 376 TQDIVKGTILVAAVALD 392
Cdd:PRK09512 300 YQMIVKAVVILLAVLVD 316
|
|
| MglC |
COG4211 |
ABC-type glucose/galactose transport system, permease component [Carbohydrate transport and ... |
57-394 |
1.49e-45 |
|
ABC-type glucose/galactose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443358 Cd Length: 336 Bit Score: 159.68 E-value: 1.49e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 57 FLNARNFSNLTRQMAVTGVLSVGMLMVIVIGEIDLSVGSLVGLTG-MAAALVQANNAWG----------VTATLTIALVF 125
Cdd:COG4211 36 FLSLRNIRNILTQSSTRMIIALGVAGLIVTQGTDLSAGRMVGLAAvISASLLQSGDYAGkffpnlpelpIIVPILIAIAI 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 126 GLIIGCAQGILTSYARVPSFIVTLGGLLAwrgvtkaisagqtipiqLYNFNSIgqsYLDKPIGWAFAALavvaiivtqlr 205
Cdd:COG4211 116 GALFGLINGFFVAKLKVPPFIATLGTMLI-----------------VYGINSI---YTDRPGAQPIGGL----------- 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 206 wqssrkRLGLSTLSSTqlalRIGIPSVlsvalvamlnayeGIPVPVLLFLIVALAGAFVMSNTTWGRYMYAVGGNREAAR 285
Cdd:COG4211 165 ------DESFTNFAQG----SINIGGF-------------GIPYLIIYAIIVIVIMWFIWNKTKFGKNMYAVGGNPEAAE 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 286 LSGINTRALTIATFGVLGLLAGLAGVIYTARVGSASPDAGLLLELDAIAACVIGGASLMGGRGTIAGACMGALFMASLDN 365
Cdd:COG4211 222 VSGVNVFKTLIIVYALAGALYGFAGFLEAARTGSATNNYGNGYELDAIAACVVGGVSFSGGIGKISGVVIGVLIFTVINY 301
|
330 340
....*....|....*....|....*....
gi 499840976 366 GMSLKNVPDFTQDIVKGTILVAAVALDML 394
Cdd:COG4211 302 GLTFIGVNPYWQYIIKGLIIIAAVALDIR 330
|
|
| PRK09699 |
PRK09699 |
D-allose ABC transporter permease; |
42-394 |
1.22e-44 |
|
D-allose ABC transporter permease;
Pssm-ID: 182035 [Multi-domain] Cd Length: 312 Bit Score: 156.86 E-value: 1.22e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 42 LVAIWIVFEYTTHGVFLNARNFSNLTRQMAVTGVLSVGMLMVIVIGEIDLSVGSLVGLTGMAAALVQANNAWGVTATLTI 121
Cdd:PRK09699 18 LAIIVAIFGSLSPEYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLMLAGVDPFLAALIG 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 122 ALVFGLIIGCAQGILTSYARVPSFIVTLGGLLAWRGVTKAISAGQTIpiqlYNFNSigqSYLDkpigwafaalavvaiiv 201
Cdd:PRK09699 98 GVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSV----YGFSF---DFVN----------------- 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 202 tqlrwqssrkrlglstlsstqlalrigipsvlsvalvAMLNAYEGIPVPVLLFLIVALAGAFVMSNTTWGRYMYAVGGNR 281
Cdd:PRK09699 154 -------------------------------------FFAASVIGIPVPVIFSLIVALILWFLTTRMRLGRNIYALGGNK 196
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 282 EAARLSGINTRALTIATFGVLGLLAGLAGVIYTARVGSASPDAGLLLELDAIAACVIGGASLMGGRGTIAGACMGALFMA 361
Cdd:PRK09699 197 NSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIG 276
|
330 340 350
....*....|....*....|....*....|...
gi 499840976 362 SLDNGMSLKNVPDFTQDIVKGTILVAAVALDML 394
Cdd:PRK09699 277 TINNGLNILQVQTYYQLVVMGGLIIAAVALDRL 309
|
|
| araH |
PRK11285 |
L-arabinose transporter permease protein; Provisional |
57-398 |
2.09e-43 |
|
L-arabinose transporter permease protein; Provisional
Pssm-ID: 183076 [Multi-domain] Cd Length: 333 Bit Score: 154.07 E-value: 2.09e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 57 FLNARNFSNLTRQMAVTGVLSVGMLMVIVIGEIDLSVGSLVGLTGMAAALVqANNAWGVTATLTIALVFGLIIGCAQGIL 136
Cdd:PRK11285 50 FASFINMKGLGLAISMIGMVACTMLFCLASGDFDLSVASVVAFAGVVTAVV-INATESLWLGVAAGLLLGAAVGLVNGFV 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 137 TSYARVPSFIVTLGGLLAWRGVTKAISAGQTIPIQLYNFNSIGQSyldkpigwafaalavvaiivtqlrwqssrkrlgls 216
Cdd:PRK11285 129 IARLKINALITTLATMQIVRGLAYIISDGKAVGISDERFFALGYA----------------------------------- 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 217 tlsstqlalrigipsvlsvalvamlnAYEGIPVPVLLFLIVALAGAFVMSNTTWGRYMYAVGGNREAARLSGINTRALTI 296
Cdd:PRK11285 174 --------------------------NFFGVPAPIWLTVACFVVFGFLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKI 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 297 ATFGVLGLLAGLAGVIYTARVGSASPDAGLLLELDAIAACVIGGASLMGGRGTIAGACMGALFMASLDNGMSLKNVPDFT 376
Cdd:PRK11285 228 IIFVLQGLVSALAGVILASRMTSGQPMTSIGFELIVISACVLGGVSLKGGIAKISGVVAGVLILGTVENAMNLLNISPFY 307
|
330 340
....*....|....*....|..
gi 499840976 377 QDIVKGTILVAAVALDMLSRKR 398
Cdd:PRK11285 308 QYVVRGLILLAAVLFDRYKQRA 329
|
|
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
36-394 |
2.77e-35 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 132.50 E-value: 2.77e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 36 YTMAAALVAIWIVFEYTthgvFLNARNFSNLTRQMAVTGVLSVGMLMVIVIGEIDLSVGSLVGLTG-MAAALVQA-NNA- 112
Cdd:PRK09478 19 YVVLLVLLAIIIIQDPT----FLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAvVAATLLQSmDNAn 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 113 --------WGVTATLTIALVFGLIIGCAQGILTSYARVPSFIVTLGGLlawrgvtkaisagqtipIQLYNFNSIgqsYLD 184
Cdd:PRK09478 95 kvfpelatMPIALVILIVCAIGAVIGLINGLIIAYLNVTPFIATLGTM-----------------IIVYGINSL---YYD 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 185 KPIGWAFAALavvaiivtqlrwqssrkRLGLSTLssTQLALRIG---IPSVLSVALVAMLNAYegipvpvllflivalag 261
Cdd:PRK09478 155 FVGASPISGF-----------------DSGFSTF--AQGFVALGsfrLSYITFYALIAVAFVW----------------- 198
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 262 aFVMSNTTWGRYMYAVGGNREAARLSGINTRALTIATFGVLGLLAGLAGVIYTARVGSASPDAGLLLELDAIAACVIGGA 341
Cdd:PRK09478 199 -VLWNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSGVFYAFGGMLEAGRIGSATNNLGFMYELDAIAACVVGGV 277
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 499840976 342 SLMGGRGTIAGACMGALFMASLDNGMSLKNVPDFTQDIVKGTILVAAVALDML 394
Cdd:PRK09478 278 SFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAIIIFAVALDSL 330
|
|
| PRK11618 |
PRK11618 |
inner membrane ABC transporter permease protein YjfF; Provisional |
57-360 |
3.58e-35 |
|
inner membrane ABC transporter permease protein YjfF; Provisional
Pssm-ID: 183235 [Multi-domain] Cd Length: 317 Bit Score: 131.61 E-value: 3.58e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 57 FLNARNFSNLTRQMAVTGVLSVGMLMVIVIGEIDLSVGSLVGLTGMAAALVQANNAWGVTATLTIALVFGLIIGCAQGIL 136
Cdd:PRK11618 29 FASTRVICNLLTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKLIGDYGWSPLLAFPLVLVMGAAFGAFMGAL 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 137 TSYARVPSFIVTLGGLLAWRGVTKAISAgQTIPIQLYNFNSIGQSYLDKPIGWAFAALAvvaiivtqlrwqssrkrlgls 216
Cdd:PRK11618 109 IHYLKLPAFIVTLAGMFLARGVSFLVSE-ESIPINHPFYDTLSSLAWKLPGGGRLSAMA--------------------- 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 217 tlsstqlalrigipsvlsvalvamlnayegipvpvLLFLIVALAGAFVMSNTTWGRYMYAVGGNREAARLSGINTRALTI 296
Cdd:PRK11618 167 -----------------------------------LIMLAVVAIGIFLAHRTRFGNNVYAIGGNATSANLMGIPVRRTTI 211
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 499840976 297 ATFGVLGLLAGLAGVIYTARVGSASPDAGLLLELDAIAACVIGGASLMGGRGTIAGACMGALFM 360
Cdd:PRK11618 212 RIYMLSGFLATLAGIVFSLYTSAGYALAAVGVELDAIAAVVIGGTLLTGGVGTVLGTLFGVLIQ 275
|
|
| PRK15432 |
PRK15432 |
autoinducer 2 ABC transporter permease LsrC; Provisional |
28-392 |
3.00e-32 |
|
autoinducer 2 ABC transporter permease LsrC; Provisional
Pssm-ID: 185330 [Multi-domain] Cd Length: 344 Bit Score: 124.46 E-value: 3.00e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 28 KFGATARAYTMAAALVAIWIVFEYTTHGvFLNARNFSNLTRQMAVTGVLSVGMLMVIVIGEIDLSVGSLVGLTGMAAALV 107
Cdd:PRK15432 3 KFIQNNRELTALLAIVLLFVLLGFLDRQ-YLSLQTLTMVFSSAQILILLAIGATLVMLTRNIDVSVGSITGLCAVLVGML 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 108 qANNAWGVTATLTIALVFGLIIGCAQGILTSYARVPSFIVTLGGLLAWRGVTKAISAGQTIpiqlynfNSIGQSyldkpi 187
Cdd:PRK15432 82 -LNAGYSLPVACLATLLLGLLAGFFNGVLVAWLRIPAIVATLGTLGLYRGIMLLWTGGKWI-------EGLPAE------ 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 188 gwafaalavvaiivtqlrwqssrkrlgLSTLSStqlalrigiPSVLSVALVAMLnayegipvpvLLFLIvaLAGAFVMSN 267
Cdd:PRK15432 148 ---------------------------LKQLSA---------PILLGISPIGWL----------TLILI--LAMAWLLAK 179
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 268 TTWGRYMYAVGGNREAARLSGINTRALTIATFGVLGLLAGLAGVIYTARVGSASPDAGLLLELDAIAACVIGGASLMGGR 347
Cdd:PRK15432 180 TAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFIPNQTGTGLEMKAIAACVLGGISLLGGS 259
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 499840976 348 GTIAGACMGALFMASLDNGMSLKNVPDFTQDIVKGTILVAAVALD 392
Cdd:PRK15432 260 GTIIGAVLGAYFLTQIDSVLVLLRIPAWWNDFIAGLVLLGVLVFD 304
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
62-389 |
8.03e-20 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 88.47 E-value: 8.03e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 62 NFSNLTRQMAVTGVLSVGMLMVIVI-GEIDLSVGSLVGLTGMAAALVQANNAWGVTATLTIALVFGLIIGCAQGILTSYA 140
Cdd:pfam02653 1 NILNILTLASIYAIAALGLTLIYGIaGVINLGHGGFMMLGAYVAAMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 141 RVPSFIVTLGGLLAWRGVTkaisagqtipiQLYNFNSIGQSYLDKPIGWAFAALAVVAIIVTQLRWqssrkrlglstlss 220
Cdd:pfam02653 81 KINEVIITLLLNLAALGLA-----------LFLVTGILGGEGGTSGITGPSGFPGAFLSFAFAFIF-------------- 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 221 tqlalrigipsvlsvalvamlnayegipvpvLLFLIVALAGAFVMSNTTWGRYMYAVGGNREAARLSGINTRALTIATFG 300
Cdd:pfam02653 136 -------------------------------LLALLLVLALWLLLYRTKFGRALRAVGENEEAARAAGINVKKLKLLTFV 184
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 301 VLGLLAGLAGVIYTARVGSASP-DAGLLLELDAIAACVIGGAslmggrGTIAGACMGALFMASLDNGMS-LKNVPDFTQD 378
Cdd:pfam02653 185 ISGALAGLAGALLALYTGVVPPsNFGVGLGLDAIAAVVLGGA------GSPIGVVIGSLIIGLVQSLGLgALGSPPELSL 258
|
330
....*....|.
gi 499840976 379 IVKGTILVAAV 389
Cdd:pfam02653 259 LVLGALLILVL 269
|
|
| TM_PBP1_branched-chain-AA_like |
cd06574 |
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ... |
227-389 |
4.51e-13 |
|
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.
Pssm-ID: 119320 [Multi-domain] Cd Length: 266 Bit Score: 68.84 E-value: 4.51e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 227 IGIPSVLSVALVAMLNAYEGIPVPVLLFLIVALAGAFVMSNTTWGRYMYAVGGNREAARLSGINTRALTIATFGVLGLLA 306
Cdd:cd06574 102 GTRDTLLGLLLLFGISGTLSIPVVLLLIVLLVLFLVIWFLRTKLGLAMRATGDNPDMARSLGINVDRTRILGLVISNALA 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 307 GLAGVIYTARVGSASPDAGLLLELDAIAACVIGGASL--MGGRGTIAGACMGALFMASLDNGMSLKNVPDFTQDIVKGTI 384
Cdd:cd06574 182 ALGGALYAQYQGFADVNMGIGTGVIGLAAVIIGGAIVgrRTIKASILGVIIGAILYRIALALALGSGLIPSDLKLITAGV 261
|
....*
gi 499840976 385 LVAAV 389
Cdd:cd06574 262 IVLVL 266
|
|
| PRK15038 |
PRK15038 |
autoinducer 2 ABC transporter permease LsrD; |
246-389 |
5.23e-13 |
|
autoinducer 2 ABC transporter permease LsrD;
Pssm-ID: 184998 Cd Length: 330 Bit Score: 69.47 E-value: 5.23e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 246 GIPVPVLLFLIVALAGAFVMSNTTWGRYMYAVGGNREAARLSGINTRALTIATFGVLGLLAGLAGVIYTARVGSASPDAG 325
Cdd:PRK15038 162 GLPVPLIIFLICLLVFWLLMHRTHAGRNVFLIGQSPRVALYSAIPVNRTLCALYAMTGLASAIAAVLLVSYFGSARSDLG 241
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 499840976 326 LLLELDAIAACVIGGASLMGGRGTIAGACMGALFMASLDNGMSLKNVPDFTQDIVKGTILVAAV 389
Cdd:PRK15038 242 ASFLMPAITAVVLGGANIYGGSGSIIGTALAVLLVGYLQQGLQMAGVPNQISSALSGALLIVVV 305
|
|
| LivM |
COG4177 |
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport ... |
251-389 |
5.76e-13 |
|
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443336 [Multi-domain] Cd Length: 285 Bit Score: 68.57 E-value: 5.76e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 251 VLLFLIVALAGAFVMSNTTWGRYMYAVGGNREAARLSGINTRALTIATFGVLGLLAGLAGVIYTARVGSASPDA-GLLLE 329
Cdd:COG4177 138 VLALLVLVLLLLRRLVRSRFGRALRAIRENEIAAEALGINVTRYKLLAFVLSAALAGLAGALYAHYVGFVSPESfSFLLS 217
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 330 LDAIAACVIggaslmGGRGTIAGACMGALFMASLDNGmsLKNVPDFtQDIVKGTILVAAV 389
Cdd:COG4177 218 IEILLMVVL------GGLGSLLGPVLGAVLLVLLPEL--LRSLPEY-RLLIFGLLLILVV 268
|
|
| NupP |
COG4603 |
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and ... |
251-398 |
1.15e-12 |
|
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and metabolism];
Pssm-ID: 443653 [Multi-domain] Cd Length: 356 Bit Score: 68.61 E-value: 1.15e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 251 VLLFLIVALAGAFVMSNTTWGRYMYAVGGNREAARLSGINTRALTIATFGVLGLLAGLAGVI-YTARVGSASPDAGLLLE 329
Cdd:COG4603 200 LLIALLAAVLVWVLLNRTTLGYELRAVGLNPRAARYAGINVKRLIVLAMLISGALAGLAGAVeVLGVQGRLTPGFSPGYG 279
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 499840976 330 LDAIAACVIggaslmgGRGTIAGACMGALFMASLDNG---MSLK-NVPDFTQDIVKGTILVAAVALDMLSRKR 398
Cdd:COG4603 280 FTGIAVALL-------GRNNPLGIILAALLFGALYVGgdaMQRAlGVPSEIVDVIQGLIILFVLAADFLIRYR 345
|
|
| TM_PBP1_LivM_like |
cd06581 |
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ... |
251-389 |
1.91e-12 |
|
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119323 [Multi-domain] Cd Length: 268 Bit Score: 67.08 E-value: 1.91e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 251 VLLFLIVALAGAFVMSNTTWGRYMYAVGGNREAARLSGINTRALTIATFGVLGLLAGLAGVIYTARVGSASPDA-GLLLE 329
Cdd:cd06581 128 VLAVLLLVLLLLRRLVRSPFGRALRAIRENEVAAEALGINVTRYKLLAFALSAALAGLAGALYAHYLGFVSPESfGFALS 207
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 330 LDAIAACVIggaslmGGRGTIAGACMGALFMASLDNGmsLKNVPDFTQDIVKGTILVAAV 389
Cdd:cd06581 208 IELLLMVVL------GGLGSLLGPVLGAALLVLLPEL--LRSLGPGLRLLVFGLLLILVV 259
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
246-361 |
3.37e-12 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 66.62 E-value: 3.37e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 246 GIPVPVLLFLIVALAGA------FVMSNTTWGRYMYAVGGNREAARLSGINTRALTIATFGVLGLLAGLAGVIYTARVgS 319
Cdd:COG0559 133 GVSIPAYRLFIIVVALVllaalwLFLRRTRLGLAMRAVAQNREAARLMGINVDRVIALTFALGAALAGLAGVLLAPIY-S 211
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 499840976 320 ASPDAGLLLELDAIAACVIGGAslmggrGTIAGACMGALFMA 361
Cdd:COG0559 212 VSPTMGFLLGLKAFAAVVLGGL------GSIPGAVVGGLLLG 247
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
249-361 |
1.06e-10 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 61.68 E-value: 1.06e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 249 VPVLLFLIVALAGAFVMSNTTWGRYMYAVGGNREAARLSGINTRALTIATFGVLGLLAGLAGVIYTARVGsASPDAGLLL 328
Cdd:cd06582 132 FIIAVALVLLAALYLFLRRTRLGRAIRAVAQNPEAARLLGINVRRVFALTFALGAALAGLAGVLLAPITG-VSPTMGLLL 210
|
90 100 110
....*....|....*....|....*....|...
gi 499840976 329 ELDAIAACVIGGAslmggrGTIAGACMGALFMA 361
Cdd:cd06582 211 LLKAFAAVVLGGL------GSIPGAVVGGLLLG 237
|
|
| urea_trans_UrtB |
TIGR03409 |
urea ABC transporter, permease protein UrtB; Members of this protein family are ABC ... |
223-363 |
2.52e-08 |
|
urea ABC transporter, permease protein UrtB; Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 200272 [Multi-domain] Cd Length: 291 Bit Score: 54.94 E-value: 2.52e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 223 LALRIGIPSVLSVALV---AMLNAYEGIPVpVLLFLIVALAGAFVMSNTTWGRYMYAVGGNREAARLSGINTRALTIATF 299
Cdd:TIGR03409 118 PNVPVTAPEWLSGGLEitgALSLPYNRLFI-IVLALAVLLALALLLYRTRLGLRVRAVTQNRSMAAALGINTRRVDALTF 196
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 499840976 300 GVLGLLAGLAGVIYTaRVGSASPDAGLLLELDAIAACVIGGAslmggrGTIAGACMGALFMASL 363
Cdd:TIGR03409 197 ALGSGIAGVAGVALT-LIGNVGPTLGQLYIVDSFLVVVFGGV------GSLWGTVVAAFGLGVL 253
|
|
| TM_PBP1_transp_TpRbsC_like |
cd06580 |
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ... |
251-366 |
2.70e-08 |
|
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Pssm-ID: 119322 [Multi-domain] Cd Length: 234 Bit Score: 53.98 E-value: 2.70e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499840976 251 VLLFLIVALAGAFVMSNTTWGRYMYAVGGNREAARLSGINTRALTIATFGVLGLLAGLAGVIY-TARVGSASPDAGLLLE 329
Cdd:cd06580 98 LLLALLLVILVWLLLYRTRFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGLAGAYLvLGVQGRFTEGMSAGYG 177
|
90 100 110
....*....|....*....|....*....|....*..
gi 499840976 330 LDAIAACVIggaslmgGRGTIAGACMGALFMASLDNG 366
Cdd:cd06580 178 FIAIAVALL-------GRWNPLGILLAALLFGALEAG 207
|
|
| NupQ |
COG1079 |
ABC-type guanosine uptake system NupNOPQ, permease subunit NupQ [Nucleotide transport and ... |
246-314 |
2.77e-03 |
|
ABC-type guanosine uptake system NupNOPQ, permease subunit NupQ [Nucleotide transport and metabolism];
Pssm-ID: 440697 [Multi-domain] Cd Length: 309 Bit Score: 39.28 E-value: 2.77e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 499840976 246 GIPVPVLLFLIVALAGAFVMSNTTWGRYMYAVGGNREAARLSGINTRALTIATFGVLGLLAGLAGVIYT 314
Cdd:COG1079 146 GQSPLVYLALLLVPLVWWVLYRTRFGLRLRAVGENPAAADALGINVYRIRYLAVLIGGALAGLGGAYLS 214
|
|
| |
