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Conserved domains on  [gi|499777413|ref|WP_011458147|]
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histone H1-like repetitive region-containing protein [Chlamydia felis]

Protein Classification

1,4-alpha-glucan-branching protein; Ku protein( domain architecture ID 10538371)

1,4-alpha-glucan-branching protein transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain| Ku protein, together with LigD, forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity; binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA; recruits and stimulates the ligase activity of LigD

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HC2 pfam07382
Histone H1-like nucleoprotein HC2; This family contains the bacterial histone H1-like ...
 1-205 2.90e-36

Histone H1-like nucleoprotein HC2; This family contains the bacterial histone H1-like nucleoprotein HC2 (approximately 200 residues long), which seems to be found mostly in Chlamydia. HC2 functions in DNA condensation, although it has been suggested that it also has other roles.


:

Pssm-ID: 369339 [Multi-domain]  Cd Length: 187  Bit Score: 125.28  E-value: 2.90e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499777413    1 MLGVQKKRSSKKTATK--AVRKP-ARKAAAGKTV-RKTVAKKTTARKTVRKTTTARKTVAKKAATtrkpavkKAAASRKP 76
Cdd:pfam07382   1 MLGAQKKRSSKKTAAKkaAVRKPaAKKAAAKKTVvRKVAAKKPAARKTVAKKTVAAKKPAAKKAA-------KKAVAKKV 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499777413   77 AAKKATTRKPVAKKVatrkpavrkTVRKTVAKKTTARKTVRKTTTARKTVAKKAattrkpaVKKAAASRKPAARKAVAKP 156
Cdd:pfam07382  74 VAKKPVAKKAVAKKA---------TAKKVAAKKVVAKKTVAKKAAAKKPAAKKA-------VAKKAVARKPAAKKAVAKK 137

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 499777413  157 ALSTCHKHHKHTAACKRVCSSSATR-RCGSKSRVRTAHGWRQQLMKLVAR 205
Cdd:pfam07382 138 AASTCHKNHKHTAACKRVASSSATRaACGSKSRVNPAHGWRQQLMKLVSR 187
 
Name Accession Description Interval E-value
HC2 pfam07382
Histone H1-like nucleoprotein HC2; This family contains the bacterial histone H1-like ...
 1-205 2.90e-36

Histone H1-like nucleoprotein HC2; This family contains the bacterial histone H1-like nucleoprotein HC2 (approximately 200 residues long), which seems to be found mostly in Chlamydia. HC2 functions in DNA condensation, although it has been suggested that it also has other roles.


Pssm-ID: 369339 [Multi-domain]  Cd Length: 187  Bit Score: 125.28  E-value: 2.90e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499777413    1 MLGVQKKRSSKKTATK--AVRKP-ARKAAAGKTV-RKTVAKKTTARKTVRKTTTARKTVAKKAATtrkpavkKAAASRKP 76
Cdd:pfam07382   1 MLGAQKKRSSKKTAAKkaAVRKPaAKKAAAKKTVvRKVAAKKPAARKTVAKKTVAAKKPAAKKAA-------KKAVAKKV 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499777413   77 AAKKATTRKPVAKKVatrkpavrkTVRKTVAKKTTARKTVRKTTTARKTVAKKAattrkpaVKKAAASRKPAARKAVAKP 156
Cdd:pfam07382  74 VAKKPVAKKAVAKKA---------TAKKVAAKKVVAKKTVAKKAAAKKPAAKKA-------VAKKAVARKPAAKKAVAKK 137

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 499777413  157 ALSTCHKHHKHTAACKRVCSSSATR-RCGSKSRVRTAHGWRQQLMKLVAR 205
Cdd:pfam07382 138 AASTCHKNHKHTAACKRVASSSATRaACGSKSRVNPAHGWRQQLMKLVSR 187
histone_lik_HC2 NF038052
histone H1-like DNA-binding protein Hc2; This model describes highly repetitive, Lys and ...
 1-205 2.27e-31

histone H1-like DNA-binding protein Hc2; This model describes highly repetitive, Lys and Arg-rich histone H1-like protein Hc2, as found in the genus Chlamydia.


Pssm-ID: 468327 [Multi-domain]  Cd Length: 201  Bit Score: 113.07  E-value: 2.27e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499777413   1 MLGVQKKRSSKKTATKavRKPARKAAAgktvRKTVAKKTTARKTVRKTTTARKTVAKKAATTRKPAVKKAAASRKPAAKK 80
Cdd:NF038052   1 MLGVQKKRSTRKTAAR--KTVVRKPAA----KKTAAKKAPVRKVAAKKTVARKTVAKKTVAARKPVAKKATAKKAPVRKV 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499777413  81 ATTRKPVAKKVATRKPAVRKTV-RKTVAKKTTARKTVRKTTTARKTVAKKAATTRKPAVKKAAASRKpaarKAVAKPALS 159
Cdd:NF038052  75 AAKKTVARKTVAKKTVAARKPVaKKATAKKAPVRKVAAKKTVARKTVAKKTVAALKPAAKRVASTKK----SSVAVKAGV 150

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 499777413 160 tCHKHHKHTAACKR-------VCSSSATRRCgSKSRVRTAHGWRQQLMKLVAR 205
Cdd:NF038052 151 -CMKKHKHTAACGRvaasgvkVCASAAKRKT-NPNRSRTAHSWRQQLMKLVAR 201
valS PRK14900
valyl-tRNA synthetase; Provisional
 20-152 8.09e-09

valyl-tRNA synthetase; Provisional


Pssm-ID: 237855 [Multi-domain]  Cd Length: 1052  Bit Score: 54.61  E-value: 8.09e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499777413   20 KPARKAAAGKTvrkTVAKKTTARKTVRKTTTARKTVAKKAATTRKPAVKKAAASRKPAAKKATTRKPVAKKVATRKPAVR 99
Cdd:PRK14900  923 KPTQDGPAAEA---QPAQENTVVESAEKAVAAVSEAAQQAATAVASGIEKVAEAVRKTVRRSVKKAAATRAAMKKKVAKK 999

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 499777413  100 KTVRKTVAKKTTARKTVRKTTTARKTVAKKAAttRKPAVKKAA--ASRKPAARKA 152
Cdd:PRK14900 1000 APAKKAAAKKAAAKKAAAKKKVAKKAPAKKVA--RKPAAKKAAkkPARKAAGRKA 1052
COG1754 COG1754
Uncharacterized C-terminal domain of topoisomerase IA [Function unknown];
22-73 2.82e-05

Uncharacterized C-terminal domain of topoisomerase IA [Function unknown];


Pssm-ID: 441360 [Multi-domain]  Cd Length: 892  Bit Score: 44.04  E-value: 2.82e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 499777413  22 ARKAAAGKTVRKTVAKKTTARKTVRKTTTARKTVAKKAATTRKPAVKKAAAS 73
Cdd:COG1754  841 AEKRAKGPAKKKKAAKKAAAKKAAAKKTAAKKAAAKKAAAKKAAAKKAAKKA 892
 
Name Accession Description Interval E-value
HC2 pfam07382
Histone H1-like nucleoprotein HC2; This family contains the bacterial histone H1-like ...
 1-205 2.90e-36

Histone H1-like nucleoprotein HC2; This family contains the bacterial histone H1-like nucleoprotein HC2 (approximately 200 residues long), which seems to be found mostly in Chlamydia. HC2 functions in DNA condensation, although it has been suggested that it also has other roles.


Pssm-ID: 369339 [Multi-domain]  Cd Length: 187  Bit Score: 125.28  E-value: 2.90e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499777413    1 MLGVQKKRSSKKTATK--AVRKP-ARKAAAGKTV-RKTVAKKTTARKTVRKTTTARKTVAKKAATtrkpavkKAAASRKP 76
Cdd:pfam07382   1 MLGAQKKRSSKKTAAKkaAVRKPaAKKAAAKKTVvRKVAAKKPAARKTVAKKTVAAKKPAAKKAA-------KKAVAKKV 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499777413   77 AAKKATTRKPVAKKVatrkpavrkTVRKTVAKKTTARKTVRKTTTARKTVAKKAattrkpaVKKAAASRKPAARKAVAKP 156
Cdd:pfam07382  74 VAKKPVAKKAVAKKA---------TAKKVAAKKVVAKKTVAKKAAAKKPAAKKA-------VAKKAVARKPAAKKAVAKK 137

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 499777413  157 ALSTCHKHHKHTAACKRVCSSSATR-RCGSKSRVRTAHGWRQQLMKLVAR 205
Cdd:pfam07382 138 AASTCHKNHKHTAACKRVASSSATRaACGSKSRVNPAHGWRQQLMKLVSR 187
histone_lik_HC2 NF038052
histone H1-like DNA-binding protein Hc2; This model describes highly repetitive, Lys and ...
 1-205 2.27e-31

histone H1-like DNA-binding protein Hc2; This model describes highly repetitive, Lys and Arg-rich histone H1-like protein Hc2, as found in the genus Chlamydia.


Pssm-ID: 468327 [Multi-domain]  Cd Length: 201  Bit Score: 113.07  E-value: 2.27e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499777413   1 MLGVQKKRSSKKTATKavRKPARKAAAgktvRKTVAKKTTARKTVRKTTTARKTVAKKAATTRKPAVKKAAASRKPAAKK 80
Cdd:NF038052   1 MLGVQKKRSTRKTAAR--KTVVRKPAA----KKTAAKKAPVRKVAAKKTVARKTVAKKTVAARKPVAKKATAKKAPVRKV 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499777413  81 ATTRKPVAKKVATRKPAVRKTV-RKTVAKKTTARKTVRKTTTARKTVAKKAATTRKPAVKKAAASRKpaarKAVAKPALS 159
Cdd:NF038052  75 AAKKTVARKTVAKKTVAARKPVaKKATAKKAPVRKVAAKKTVARKTVAKKTVAALKPAAKRVASTKK----SSVAVKAGV 150

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 499777413 160 tCHKHHKHTAACKR-------VCSSSATRRCgSKSRVRTAHGWRQQLMKLVAR 205
Cdd:NF038052 151 -CMKKHKHTAACGRvaasgvkVCASAAKRKT-NPNRSRTAHSWRQQLMKLVAR 201
valS PRK14900
valyl-tRNA synthetase; Provisional
 20-152 8.09e-09

valyl-tRNA synthetase; Provisional


Pssm-ID: 237855 [Multi-domain]  Cd Length: 1052  Bit Score: 54.61  E-value: 8.09e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499777413   20 KPARKAAAGKTvrkTVAKKTTARKTVRKTTTARKTVAKKAATTRKPAVKKAAASRKPAAKKATTRKPVAKKVATRKPAVR 99
Cdd:PRK14900  923 KPTQDGPAAEA---QPAQENTVVESAEKAVAAVSEAAQQAATAVASGIEKVAEAVRKTVRRSVKKAAATRAAMKKKVAKK 999

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 499777413  100 KTVRKTVAKKTTARKTVRKTTTARKTVAKKAAttRKPAVKKAA--ASRKPAARKA 152
Cdd:PRK14900 1000 APAKKAAAKKAAAKKAAAKKKVAKKAPAKKVA--RKPAAKKAAkkPARKAAGRKA 1052
valS PRK14900
valyl-tRNA synthetase; Provisional
 3-85 1.60e-07

valyl-tRNA synthetase; Provisional


Pssm-ID: 237855 [Multi-domain]  Cd Length: 1052  Bit Score: 50.76  E-value: 1.60e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499777413    3 GVQKKRSS-KKTATKAVRKPARKAAAG--KTVRKTVAKKTTARKTVRKTTTARKTVAKKAAT---TRKPAVKKAAasRKP 76
Cdd:PRK14900  966 GIEKVAEAvRKTVRRSVKKAAATRAAMkkKVAKKAPAKKAAAKKAAAKKAAAKKKVAKKAPAkkvARKPAAKKAA--KKP 1043


                  ....*....
gi 499777413   77 AAKKATTRK 85
Cdd:PRK14900 1044 ARKAAGRKA 1052
PRK05901 PRK05901
RNA polymerase sigma factor; Provisional
 29-146 1.08e-06

RNA polymerase sigma factor; Provisional


Pssm-ID: 235640 [Multi-domain]  Cd Length: 509  Bit Score: 48.07  E-value: 1.08e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499777413  29 KTVRKTVAKKTTARKTVRKTTTARKTVAKKAATTRKPAVKKAAASRKPAAKKATTRKPVAKKVATRKPAVRKTVRKTVAK 108
Cdd:PRK05901   5 STKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAK 84

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 499777413 109 KTTARKTVRKTTTARKTVAKKAATTRKPAVKKAAASRK 146
Cdd:PRK05901  85 AAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVK 122
valS PRK14900
valyl-tRNA synthetase; Provisional
 39-173 1.43e-06

valyl-tRNA synthetase; Provisional


Pssm-ID: 237855 [Multi-domain]  Cd Length: 1052  Bit Score: 48.06  E-value: 1.43e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499777413   39 TTARKTVRKTTTARKTVAKKAA-------TTRKPAVKKAAASRKPAAKKATTRkpVAKKVATRKPAVRKTVRKtVAKKTT 111
Cdd:PRK14900  910 SARRDTMEIQNEQKPTQDGPAAeaqpaqeNTVVESAEKAVAAVSEAAQQAATA--VASGIEKVAEAVRKTVRR-SVKKAA 986

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 499777413  112 ARKTVRKTTTARKTVAKKAATTRKPAVKKAA---ASRKPAARKAVAKPALSTCHKHHKHTAACKR 173
Cdd:PRK14900  987 ATRAAMKKKVAKKAPAKKAAAKKAAAKKAAAkkkVAKKAPAKKVARKPAAKKAAKKPARKAAGRK 1051
COG1754 COG1754
Uncharacterized C-terminal domain of topoisomerase IA [Function unknown];
22-73 2.82e-05

Uncharacterized C-terminal domain of topoisomerase IA [Function unknown];


Pssm-ID: 441360 [Multi-domain]  Cd Length: 892  Bit Score: 44.04  E-value: 2.82e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 499777413  22 ARKAAAGKTVRKTVAKKTTARKTVRKTTTARKTVAKKAATTRKPAVKKAAAS 73
Cdd:COG1754  841 AEKRAKGPAKKKKAAKKAAAKKAAAKKTAAKKAAAKKAAAKKAAAKKAAKKA 892
COG1754 COG1754
Uncharacterized C-terminal domain of topoisomerase IA [Function unknown];
56-110 3.65e-05

Uncharacterized C-terminal domain of topoisomerase IA [Function unknown];


Pssm-ID: 441360 [Multi-domain]  Cd Length: 892  Bit Score: 43.65  E-value: 3.65e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 499777413  56 AKKAAttRKPAVKKAAAsRKPAAKKATTRKPVAKKVATRKPAVRKTVRKTVAKKT 110
Cdd:COG1754  841 AEKRA--KGPAKKKKAA-KKAAAKKAAAKKTAAKKAAAKKAAAKKAAAKKAAKKA 892
PRK05901 PRK05901
RNA polymerase sigma factor; Provisional
 38-152 6.73e-05

RNA polymerase sigma factor; Provisional


Pssm-ID: 235640 [Multi-domain]  Cd Length: 509  Bit Score: 42.67  E-value: 6.73e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499777413  38 KTTARKTVRKTTTARKTVAKKAATTRKPAVKKAAASRKPAAKKATTRKPVAKKVATRKPAVRKTVRKTVAKKTTARKTVR 117
Cdd:PRK05901   2 TTASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKT 81

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 499777413 118 KT-TTARKTVAKKAATTRKPAVKKAAASRKPAARKA 152
Cdd:PRK05901  82 AAkAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDD 117
PRK05901 PRK05901
RNA polymerase sigma factor; Provisional
 6-118 8.24e-05

RNA polymerase sigma factor; Provisional


Pssm-ID: 235640 [Multi-domain]  Cd Length: 509  Bit Score: 42.67  E-value: 8.24e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499777413   6 KKRSSKKTATKAVRKPARKAAAGKTVRKTVAKKTTAR------KTVRKTTTARKTVAKKAATTRKPAVKKAAASRKPAAK 79
Cdd:PRK05901   4 ASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEaleskkKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAA 83

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 499777413  80 KATTRKPVAKKVATRKPAVRKTVRKTVAKKTTARKTVRK 118
Cdd:PRK05901  84 KAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVK 122
PRK05035 PRK05035
electron transport complex protein RnfC; Provisional
 20-174 1.81e-04

electron transport complex protein RnfC; Provisional


Pssm-ID: 235334 [Multi-domain]  Cd Length: 695  Bit Score: 41.47  E-value: 1.81e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499777413  20 KPARKAAAGKTVRKTVAKKTTARKTVRKTTTARKTVAKKAATTRKPAVKKAAASRKPAAKKATTRKPVAKKVATRKPAVR 99
Cdd:PRK05035 472 RHKKAAEARAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQARARQAEKQAAAAADPKKAAVA 551

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 499777413 100 KTVRKTVAKKttARKTVRKTTTARKTVAKKAATTRKPAVKKAAASRKPAARKAVAKPALSTCHKHHKHTAACKRV 174
Cdd:PRK05035 552 AAIARAKAKK--AAQQAANAEAEEEVDPKKAAVAAAIARAKAKKAAQQAASAEPEEQVAEVDPKKAAVAAAIARA 624
PRK05901 PRK05901
RNA polymerase sigma factor; Provisional
 49-157 1.89e-04

RNA polymerase sigma factor; Provisional


Pssm-ID: 235640 [Multi-domain]  Cd Length: 509  Bit Score: 41.52  E-value: 1.89e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499777413  49 TTARKTVAKKAATTRKPAVKKAAASRKPAAKKATTRKPVAKKVATRKPAVRKTVRKTVAK--KTTARKTVRKTTTARKTV 126
Cdd:PRK05901   2 TTASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGmvKDTDDATESDIPKKKTKT 81

                         90       100       110
                 ....*....|....*....|....*....|.
gi 499777413 127 AKKAATTRKPAVKKAAASRKPAARKAVAKPA 157
Cdd:PRK05901  82 AAKAAAAKAPAKKKLKDELDSSKKAEKKNAL 112
COG1754 COG1754
Uncharacterized C-terminal domain of topoisomerase IA [Function unknown];
88-141 2.69e-04

Uncharacterized C-terminal domain of topoisomerase IA [Function unknown];


Pssm-ID: 441360 [Multi-domain]  Cd Length: 892  Bit Score: 41.34  E-value: 2.69e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 499777413  88 AKKVATRKPAVRKTVRKTVAKKTTARKTVRKTTTARKTVAKKAATtrKPAVKKA 141
Cdd:COG1754  841 AEKRAKGPAKKKKAAKKAAAKKAAAKKTAAKKAAAKKAAAKKAAA--KKAAKKA 892
COG1754 COG1754
Uncharacterized C-terminal domain of topoisomerase IA [Function unknown];
14-69 4.26e-04

Uncharacterized C-terminal domain of topoisomerase IA [Function unknown];


Pssm-ID: 441360 [Multi-domain]  Cd Length: 892  Bit Score: 40.57  E-value: 4.26e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 499777413  14 ATKAVRKPARKaaaGKTVRKTVAKKTTARKTVRKTTTARKTVAKKAAtTRKPAVKK 69
Cdd:COG1754  841 AEKRAKGPAKK---KKAAKKAAAKKAAAKKTAAKKAAAKKAAAKKAA-AKKAAKKA 892
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 21-128 4.74e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 40.64  E-value: 4.74e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499777413   21 PARKAAAGKTVRKTVAKKTTARKTVRKTTTARKTVAKKAATTRKPAVKKAAASRKPAAKKATTRKPVAKKVATRKPAVRK 100
Cdd:PRK12270   42 AAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTPLR 121

                          90       100
                  ....*....|....*....|....*...
gi 499777413  101 TVRKTVAKKTTARKTVRKTTTARKTVAK 128
Cdd:PRK12270  122 GAAAAVAKNMDASLEVPTATSVRAVPAK 149
PRK13808 PRK13808
adenylate kinase; Provisional
 23-152 1.50e-03

adenylate kinase; Provisional


Pssm-ID: 172341 [Multi-domain]  Cd Length: 333  Bit Score: 38.72  E-value: 1.50e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499777413  23 RKAAAGKTVRKTVAKKTTARKTVRKTTTARKTVAKKAATTRKPAVKKAAASRKPAAKKATTRKPVAKKVATRKPAVRKTV 102
Cdd:PRK13808 195 GAANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKA 274

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 499777413 103 RKTVAKKTT-ARKTVRKTTTARKTVAKKAATTRKPAVKKAAASRKPAARKA 152
Cdd:PRK13808 275 AKAAAKAAKgAAKATKGKAKAKKKAGKKAAAGSKAKATAKAPKRGAKGKKA 325
valS PRK14900
valyl-tRNA synthetase; Provisional
 49-186 1.51e-03

valyl-tRNA synthetase; Provisional


Pssm-ID: 237855 [Multi-domain]  Cd Length: 1052  Bit Score: 38.82  E-value: 1.51e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499777413   49 TTARKTVAKKAAttRKPAVKKAAASRKPAAKKATTRKpVAKKVATRKPAVRKTVRKTVAKKTTARKTVRKTTTArktVAK 128
Cdd:PRK14900  910 SARRDTMEIQNE--QKPTQDGPAAEAQPAQENTVVES-AEKAVAAVSEAAQQAATAVASGIEKVAEAVRKTVRR---SVK 983

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 499777413  129 KAATTR----KPAVKKAAA----SRKPAARKAVAK--PALSTCHKHHKHTAACKRVCSSSATRRCGSK 186
Cdd:PRK14900  984 KAAATRaamkKKVAKKAPAkkaaAKKAAAKKAAAKkkVAKKAPAKKVARKPAAKKAAKKPARKAAGRK 1051
PRK05901 PRK05901
RNA polymerase sigma factor; Provisional
 4-98 1.60e-03

RNA polymerase sigma factor; Provisional


Pssm-ID: 235640 [Multi-domain]  Cd Length: 509  Bit Score: 38.82  E-value: 1.60e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499777413   4 VQKKRSSKKTATKAVRKPARKAAAGKTVRKTVAK------KTTARKTVRKTTTARKTVAKKAATTRKPAVKKAAASRKPA 77
Cdd:PRK05901  24 AAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIflsgmvKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSS 103

                         90       100
                 ....*....|....*....|.
gi 499777413  78 AKKATTRKPVAKKVATRKPAV 98
Cdd:PRK05901 104 KKAEKKNALDKDDDLNYVKDI 124
COG1754 COG1754
Uncharacterized C-terminal domain of topoisomerase IA [Function unknown];
95-144 1.81e-03

Uncharacterized C-terminal domain of topoisomerase IA [Function unknown];


Pssm-ID: 441360 [Multi-domain]  Cd Length: 892  Bit Score: 38.64  E-value: 1.81e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 499777413  95 KPAVRKTVRKTVAKKTTARKTVRKTTTARKTVAKKAATTRKPAVKKAAAS 144
Cdd:COG1754  843 KRAKGPAKKKKAAKKAAAKKAAAKKTAAKKAAAKKAAAKKAAAKKAAKKA 892
PRK13808 PRK13808
adenylate kinase; Provisional
 57-188 2.13e-03

adenylate kinase; Provisional


Pssm-ID: 172341 [Multi-domain]  Cd Length: 333  Bit Score: 38.33  E-value: 2.13e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499777413  57 KKAATTRKPAVKKAAASRKPAAKKATTRKPVAKKVATRKPAVRKTVRKTVAKKTTARKTVRKTTTARKTVAKKAATTRKP 136
Cdd:PRK13808 201 KAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAK 280

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 499777413 137 AVKKAAASRKPAARKAVAKPALSTCHKHHKHTAACKRVCSSSATRRCGSKSR 188
Cdd:PRK13808 281 AAKGAAKATKGKAKAKKKAGKKAAAGSKAKATAKAPKRGAKGKKAKKVTKKR 332
PRK13808 PRK13808
adenylate kinase; Provisional
 6-130 2.19e-03

adenylate kinase; Provisional


Pssm-ID: 172341 [Multi-domain]  Cd Length: 333  Bit Score: 37.94  E-value: 2.19e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499777413   6 KKRSSKKTATKAVRKPARKAAAGKTVRKTVAKKTTARKTVRKTTTARKTVAKKAATTRKPAVKKAAASRKPAAKKATTRK 85
Cdd:PRK13808 211 GAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATK 290

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 499777413  86 PVAKkvATRKPAVRKTVRKTVAKKTTARKTVRKTTTARKTVAKKA 130
Cdd:PRK13808 291 GKAK--AKKKAGKKAAAGSKAKATAKAPKRGAKGKKAKKVTKKRA 333
COG1754 COG1754
Uncharacterized C-terminal domain of topoisomerase IA [Function unknown];
107-156 3.34e-03

Uncharacterized C-terminal domain of topoisomerase IA [Function unknown];


Pssm-ID: 441360 [Multi-domain]  Cd Length: 892  Bit Score: 37.87  E-value: 3.34e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 499777413 107 AKKTTARKTVRKTTTARKTVAKKAATTrKPAVKKAAAsRKPAARKAVAKP 156
Cdd:COG1754  845 AKGPAKKKKAAKKAAAKKAAAKKTAAK-KAAAKKAAA-KKAAAKKAAKKA 892
PTZ00121 PTZ00121
MAEBL; Provisional
 6-173 4.08e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 37.81  E-value: 4.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499777413    6 KKRSSKKTATKAVRKPARKAAAGKTVRKTVAKKTTARKTVRKTTTARKTVAKKAATTRKPAVKKAAASRKPAAKKATTRK 85
Cdd:PTZ00121 1296 KKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEE 1375

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499777413   86 PVAKKVATRKPAVRKTVRKTVAKKTTARKTVRKTTTARKTVAKKAATTRKPA--VKKAAASRKPAARKAVAKPALSTCHK 163
Cdd:PTZ00121 1376 AKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAeeKKKADEAKKKAEEAKKADEAKKKAEE 1455

                         170
                  ....*....|
gi 499777413  164 HHKHTAACKR 173
Cdd:PTZ00121 1456 AKKAEEAKKK 1465
PRK11642 PRK11642
ribonuclease R;
22-112 6.69e-03

ribonuclease R;


Pssm-ID: 236944 [Multi-domain]  Cd Length: 813  Bit Score: 37.03  E-value: 6.69e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499777413  22 ARKA-AAGKTVRKTVAKKTTARKTVRKTTTARKTVAKKAATTRKPAVKKAAASRKPAAKKattRKPVAKkvaTRKPAVrK 100
Cdd:PRK11642 728 ERAPrNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKA---KKPSAK---TQKIAA-A 800

                         90
                 ....*....|..
gi 499777413 101 TVRKTVAKKTTA 112
Cdd:PRK11642 801 TKAKRAAKKKVA 812
COG1754 COG1754
Uncharacterized C-terminal domain of topoisomerase IA [Function unknown];
112-157 7.65e-03

Uncharacterized C-terminal domain of topoisomerase IA [Function unknown];


Pssm-ID: 441360 [Multi-domain]  Cd Length: 892  Bit Score: 36.72  E-value: 7.65e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 499777413 112 ARKTVRKTTTARKTVAKKAATtRKPAVKKAAAsRKPAARKAVAKPA 157
Cdd:COG1754  845 AKGPAKKKKAAKKAAAKKAAA-KKTAAKKAAA-KKAAAKKAAAKKA 888
PRK05035 PRK05035
electron transport complex protein RnfC; Provisional
 11-155 8.71e-03

electron transport complex protein RnfC; Provisional


Pssm-ID: 235334 [Multi-domain]  Cd Length: 695  Bit Score: 36.46  E-value: 8.71e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499777413  11 KKTATKAVRKPARKAAAGKTVRKTVAKKTTARKTVRKTTTARKTvAKKAATTRKPAVKKAAASRKPAAKKATTRKPVAKK 90
Cdd:PRK05035 515 DNSAVIAAREARKAQARARQAEKQAAAAADPKKAAVAAAIARAK-AKKAAQQAANAEAEEEVDPKKAAVAAAIARAKAKK 593

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 499777413  91 VATRKPAVRKTvrkTVAKKTTARKTVRKTTTARKTvAKKAATTRKPAVKKAAASRKPAARKAVAK 155
Cdd:PRK05035 594 AAQQAASAEPE---EQVAEVDPKKAAVAAAIARAK-AKKAEQQANAEPEEPVDPRKAAVAAAIAR 654
PTZ00121 PTZ00121
MAEBL; Provisional
 6-172 9.08e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 36.66  E-value: 9.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499777413    6 KKRSSKKTATKAVRKPARKAAAGKTVRKTVAKKTTARKTVRKTTTARKT--VAKKAATTRKPA--VKKAAASRKPA--AK 79
Cdd:PTZ00121 1437 KKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKAdeAKKKAEEAKKKAdeAKKAAEAKKKAdeAK 1516

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499777413   80 KATTRKPV--AKKVATRKPA--VRKTVRKTVAKKTTARKTVRKTTTARKT-VAKKAATTRKPAVKKAAASRKPAARKAVA 154
Cdd:PTZ00121 1517 KAEEAKKAdeAKKAEEAKKAdeAKKAEEKKKADELKKAEELKKAEEKKKAeEAKKAEEDKNMALRKAEEAKKAEEARIEE 1596

                         170
                  ....*....|....*...
gi 499777413  155 KPALSTCHKHHKHTAACK 172
Cdd:PTZ00121 1597 VMKLYEEEKKMKAEEAKK 1614
PTZ00121 PTZ00121
MAEBL; Provisional
 4-173 9.24e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 36.66  E-value: 9.24e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499777413    4 VQKKRSSKKTATKAVRKPARKAAagKTVRKTVAKKTTARKTVRKTTTARKTVAKKAATTRKP--AVKKAAASRKPA--AK 79
Cdd:PTZ00121 1334 AKKKAEEAKKAAEAAKAEAEAAA--DEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKAdeAKKKAEEDKKKAdeLK 1411

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499777413   80 KATTRKPVAKKVATRKPAVRKT--VRKTVAKKTTARKTVRKTTTARKT--VAKKAATTRKP--AVKKAAASRKPAARKAV 153
Cdd:PTZ00121 1412 KAAAAKKKADEAKKKAEEKKKAdeAKKKAEEAKKADEAKKKAEEAKKAeeAKKKAEEAKKAdeAKKKAEEAKKADEAKKK 1491

                         170       180
                  ....*....|....*....|
gi 499777413  154 AKPALSTCHKHHKHTAACKR 173
Cdd:PTZ00121 1492 AEEAKKKADEAKKAAEAKKK 1511
PTZ00121 PTZ00121
MAEBL; Provisional
 4-155 9.67e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 36.66  E-value: 9.67e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499777413    4 VQKKRSSKKTATKAVRKPARKAAAGKTVRKTVAKKTTARKTVRKTTTARKTVAKKAATTRKPAVKKAAASRKPA---AKK 80
Cdd:PTZ00121 1307 AKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKAdaaKKK 1386

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 499777413   81 ATTRKPV--AKKVATRKPAVRKTVRKTVAKKTTARKTVRKTTTARKT--VAKKAATTRKPAVKKAAASRKPAARKAVAK 155
Cdd:PTZ00121 1387 AEEKKKAdeAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKAdeAKKKAEEAKKADEAKKKAEEAKKAEEAKKK 1465
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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