NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|499754266|ref|WP_011435000|]
View 

MULTISPECIES: NADH-quinone oxidoreductase subunit C [Frankia]

Protein Classification

NADH-quinone oxidoreductase subunit C( domain architecture ID 10012965)

NADH-quinone oxidoreductase subunit C (NuoC) is part of the connecting domain of complex I of the respiratory chain that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PRK07785 PRK07785
NADH dehydrogenase subunit C; Provisional
 1-236 2.75e-125

NADH dehydrogenase subunit C; Provisional


:

Pssm-ID: 181115 [Multi-domain]  Cd Length: 235  Bit Score: 354.30  E-value: 2.75e-125
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499754266   1 MSDESTASADLIPGAAGVPGGPGGQRRDAFGAGDSGDTSGFGGLVTPVPILSSTARPFGDADADAVYDaLERAFPQLGDA 80
Cdd:PRK07785   2 GSPSSPNPADGTPGPASPTPEVIDVRRGMFGVSGTGDTSGYGGLVRPVTLPGSSPRPYGGYFDEVADR-LEEALPEFADA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499754266  81 VERVVVDRGELTVHVRRESLVAVGQTLRDDPDLRFELLSSLSGVDYPDDvTGRRLHSVAHLTSMTHRRRVRVEVSVTDAD 160
Cdd:PRK07785  81 IERVVVDRGELTLHVRREHLVEVAQTLRDDPALRFELCLGVSGVHYPHD-TGRELHAVYHLTSITHNRRIRLEVAVPDAD 159

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499754266 161 PTVPSLTSVWPTADWHERETYDMFGIVYTGHPGLTRIMMPDDWIGHPQRKDYPLGGIPVDYKGATIPPPDERRSYS 236
Cdd:PRK07785 160 PHIPSLVSVYPTNDWHERETYDFFGIVFDGHPALTRIEMPDDWVGHPQRKDYPLGGIPVEYKGATIPPPDQRRSYS 235
 
Name Accession Description Interval E-value
PRK07785 PRK07785
NADH dehydrogenase subunit C; Provisional
 1-236 2.75e-125

NADH dehydrogenase subunit C; Provisional


Pssm-ID: 181115 [Multi-domain]  Cd Length: 235  Bit Score: 354.30  E-value: 2.75e-125
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499754266   1 MSDESTASADLIPGAAGVPGGPGGQRRDAFGAGDSGDTSGFGGLVTPVPILSSTARPFGDADADAVYDaLERAFPQLGDA 80
Cdd:PRK07785   2 GSPSSPNPADGTPGPASPTPEVIDVRRGMFGVSGTGDTSGYGGLVRPVTLPGSSPRPYGGYFDEVADR-LEEALPEFADA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499754266  81 VERVVVDRGELTVHVRRESLVAVGQTLRDDPDLRFELLSSLSGVDYPDDvTGRRLHSVAHLTSMTHRRRVRVEVSVTDAD 160
Cdd:PRK07785  81 IERVVVDRGELTLHVRREHLVEVAQTLRDDPALRFELCLGVSGVHYPHD-TGRELHAVYHLTSITHNRRIRLEVAVPDAD 159

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499754266 161 PTVPSLTSVWPTADWHERETYDMFGIVYTGHPGLTRIMMPDDWIGHPQRKDYPLGGIPVDYKGATIPPPDERRSYS 236
Cdd:PRK07785 160 PHIPSLVSVYPTNDWHERETYDFFGIVFDGHPALTRIEMPDDWVGHPQRKDYPLGGIPVEYKGATIPPPDQRRSYS 235
NuoC COG0852
NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; ...
 76-216 7.17e-65

NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440613 [Multi-domain]  Cd Length: 164  Bit Score: 198.52  E-value: 7.17e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499754266  76 QLGDAVERVVVDRGELTVHVRRESLVAVGQTLRDDpdLRFELLSSLSGVDYPDDvtGRRLHSVAHLTSMTHRRRVRVEVS 155
Cdd:COG0852   14 KFGDAVLEVEEARGELTLTVPPEDLVDVARFLRDD--LGFDHLSDLTGVDYPER--GDRFEVVYHLLSLTHNRRLRLKVF 89

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 499754266 156 VTDADPTVPSLTSVWPTADWHERETYDMFGIVYTGHPGLTRIMMPDDWIGHPQRKDYPLGG 216
Cdd:COG0852   90 VPRDDPVVPSVTDVWPGANWHEREAYDMFGIVFEGHPDLRRILLPEDWEGHPLRKDFPLEG 150
Complex1_30kDa pfam00329
Respiratory-chain NADH dehydrogenase, 30 Kd subunit;
93-218 8.20e-52

Respiratory-chain NADH dehydrogenase, 30 Kd subunit;


Pssm-ID: 459763 [Multi-domain]  Cd Length: 121  Bit Score: 163.80  E-value: 8.20e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499754266   93 VHVRRESLVAVGQTLRDDpDLRFELLSSLSGVDYPDdvtGRRLHSVAHLTSMTHRRRVRVEVSVTDaDPTVPSLTSVWPT 172
Cdd:pfam00329   1 VTVDPEDLLEVARFLRDD-ELGFDHLSDLTGVDYPE---EGRFEVVYHLLSITHNVRVRVKVPLED-DPVVPSVTDIWPG 75

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 499754266  173 ADWHERETYDMFGIVYTGHPGLTRIMMPDDWIGHPQRKDYPLGGIP 218
Cdd:pfam00329  76 ANWYEREVYDMFGIVFEGHPDLRRILLPEDWEGHPLRKDFPLTGYV 121
NuoC_fam TIGR01961
NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH ...
 91-216 1.80e-51

NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH dehydrogenase complex I in bacteria, as well as many instances of the corresponding mitochondrial subunit (NADH dehydrogenase subunit 9) and of the F420H2 dehydrogenase in Methanosarcina. Complex I contains subunits designated A-N. This C subunit often occurs as a fusion protein with the D subunit. This model excludes the NAD(P)H and plastoquinone-dependent form of chloroplasts and [Energy metabolism, Electron transport]


Pssm-ID: 273897 [Multi-domain]  Cd Length: 121  Bit Score: 163.17  E-value: 1.80e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499754266   91 LTVHVRRESLVAVGQTLRDDPdLRFELLSSLSGVDYPDDvtgRRLHSVAHLTSMTHRRRVRVEVSVTDADPtVPSLTSVW 170
Cdd:TIGR01961   1 LVVWIKKEQLLEVLTFLKDPA-LGFELLTDVSGVDYPKE---KRFEVVYHLLSIKKNRRIRLKVRLSEDDP-VPSLTSVF 75

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 499754266  171 PTADWHERETYDMFGIVYTGHPGLTRIMMPDDWIGHPQRKDYPLGG 216
Cdd:TIGR01961  76 PTANWYERETYDMYGIVFDGHPDLRRILMPDDFEGHPLRKDYPLTG 121
 
Name Accession Description Interval E-value
PRK07785 PRK07785
NADH dehydrogenase subunit C; Provisional
 1-236 2.75e-125

NADH dehydrogenase subunit C; Provisional


Pssm-ID: 181115 [Multi-domain]  Cd Length: 235  Bit Score: 354.30  E-value: 2.75e-125
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499754266   1 MSDESTASADLIPGAAGVPGGPGGQRRDAFGAGDSGDTSGFGGLVTPVPILSSTARPFGDADADAVYDaLERAFPQLGDA 80
Cdd:PRK07785   2 GSPSSPNPADGTPGPASPTPEVIDVRRGMFGVSGTGDTSGYGGLVRPVTLPGSSPRPYGGYFDEVADR-LEEALPEFADA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499754266  81 VERVVVDRGELTVHVRRESLVAVGQTLRDDPDLRFELLSSLSGVDYPDDvTGRRLHSVAHLTSMTHRRRVRVEVSVTDAD 160
Cdd:PRK07785  81 IERVVVDRGELTLHVRREHLVEVAQTLRDDPALRFELCLGVSGVHYPHD-TGRELHAVYHLTSITHNRRIRLEVAVPDAD 159

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499754266 161 PTVPSLTSVWPTADWHERETYDMFGIVYTGHPGLTRIMMPDDWIGHPQRKDYPLGGIPVDYKGATIPPPDERRSYS 236
Cdd:PRK07785 160 PHIPSLVSVYPTNDWHERETYDFFGIVFDGHPALTRIEMPDDWVGHPQRKDYPLGGIPVEYKGATIPPPDQRRSYS 235
NuoC COG0852
NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; ...
 76-216 7.17e-65

NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440613 [Multi-domain]  Cd Length: 164  Bit Score: 198.52  E-value: 7.17e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499754266  76 QLGDAVERVVVDRGELTVHVRRESLVAVGQTLRDDpdLRFELLSSLSGVDYPDDvtGRRLHSVAHLTSMTHRRRVRVEVS 155
Cdd:COG0852   14 KFGDAVLEVEEARGELTLTVPPEDLVDVARFLRDD--LGFDHLSDLTGVDYPER--GDRFEVVYHLLSLTHNRRLRLKVF 89

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 499754266 156 VTDADPTVPSLTSVWPTADWHERETYDMFGIVYTGHPGLTRIMMPDDWIGHPQRKDYPLGG 216
Cdd:COG0852   90 VPRDDPVVPSVTDVWPGANWHEREAYDMFGIVFEGHPDLRRILLPEDWEGHPLRKDFPLEG 150
PRK06074 PRK06074
NADH dehydrogenase subunit C; Provisional
 77-216 4.40e-54

NADH dehydrogenase subunit C; Provisional


Pssm-ID: 235691 [Multi-domain]  Cd Length: 189  Bit Score: 172.01  E-value: 4.40e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499754266  77 LGDAVERVVVDRGELTVHVRRESLVAVGQTLRDDPDLRFELLSSLSGVDYPDDvtGRRLHSVAHLTSMTHRRRVRVEVSv 156
Cdd:PRK06074  15 LPDAIGKVTVAFGELTLKVPAEKILEVLTFLRDDPELRFEQLIDLTGVDYPER--GKRFEVVYHLLSYKHNVRLRVKVR- 91

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 499754266 157 TDADPTVPSLTSVWPTADWHERETYDMFGIVYTGHPGLTRIMMPDDWIGHPQRKDYPLGG 216
Cdd:PRK06074  92 APEDPVVPSVVDIWPSANWYEREAYDLYGIVFEGHPDLRRILTDYGFEGHPLRKDFPLTG 151
Complex1_30kDa pfam00329
Respiratory-chain NADH dehydrogenase, 30 Kd subunit;
93-218 8.20e-52

Respiratory-chain NADH dehydrogenase, 30 Kd subunit;


Pssm-ID: 459763 [Multi-domain]  Cd Length: 121  Bit Score: 163.80  E-value: 8.20e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499754266   93 VHVRRESLVAVGQTLRDDpDLRFELLSSLSGVDYPDdvtGRRLHSVAHLTSMTHRRRVRVEVSVTDaDPTVPSLTSVWPT 172
Cdd:pfam00329   1 VTVDPEDLLEVARFLRDD-ELGFDHLSDLTGVDYPE---EGRFEVVYHLLSITHNVRVRVKVPLED-DPVVPSVTDIWPG 75

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 499754266  173 ADWHERETYDMFGIVYTGHPGLTRIMMPDDWIGHPQRKDYPLGGIP 218
Cdd:pfam00329  76 ANWYEREVYDMFGIVFEGHPDLRRILLPEDWEGHPLRKDFPLTGYV 121
NuoC_fam TIGR01961
NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH ...
 91-216 1.80e-51

NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH dehydrogenase complex I in bacteria, as well as many instances of the corresponding mitochondrial subunit (NADH dehydrogenase subunit 9) and of the F420H2 dehydrogenase in Methanosarcina. Complex I contains subunits designated A-N. This C subunit often occurs as a fusion protein with the D subunit. This model excludes the NAD(P)H and plastoquinone-dependent form of chloroplasts and [Energy metabolism, Electron transport]


Pssm-ID: 273897 [Multi-domain]  Cd Length: 121  Bit Score: 163.17  E-value: 1.80e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499754266   91 LTVHVRRESLVAVGQTLRDDPdLRFELLSSLSGVDYPDDvtgRRLHSVAHLTSMTHRRRVRVEVSVTDADPtVPSLTSVW 170
Cdd:TIGR01961   1 LVVWIKKEQLLEVLTFLKDPA-LGFELLTDVSGVDYPKE---KRFEVVYHLLSIKKNRRIRLKVRLSEDDP-VPSLTSVF 75

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 499754266  171 PTADWHERETYDMFGIVYTGHPGLTRIMMPDDWIGHPQRKDYPLGG 216
Cdd:TIGR01961  76 PTANWYERETYDMYGIVFDGHPDLRRILMPDDFEGHPLRKDYPLTG 121
PRK07735 PRK07735
NADH-quinone oxidoreductase subunit C;
92-212 1.39e-30

NADH-quinone oxidoreductase subunit C;


Pssm-ID: 236081 [Multi-domain]  Cd Length: 430  Bit Score: 117.00  E-value: 1.39e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499754266  92 TVHVRRESLVAVGQTLRDDPDLRFELLSSLSGVDYPDdvtgrRLHSVAHLTSMTHRRRVRVEVSVTDADPTVPSLTSVWP 171
Cdd:PRK07735 308 TLVVEPEKYYEVAELLRFHEQLAFDYLSELHGTDFVT-----HMEVYVHLYSYGKRQSVAVKVKLDREAPQVESVTPLWK 382

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 499754266 172 TADWHERETYDMFGIVYTGHPGLTRIMMPDDWIGHPQRKDY 212
Cdd:PRK07735 383 GANWPEREAYDLLGIVFKGHPNLSRILLPDDWVGHPLRKDY 423
PRK11742 PRK11742
bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
 89-213 4.28e-30

bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional


Pssm-ID: 236965 [Multi-domain]  Cd Length: 575  Bit Score: 116.95  E-value: 4.28e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499754266  89 GELTVHVRRESLVAVGQTLRDDPDlRFELLSSLSGVD-----YPDDVTGRRLHSVAHLTSMTHRRRVRVEVSVTDADPTV 163
Cdd:PRK11742  22 GIPVVWVKREQLLEVLRFLRKLPK-PYVMLFDLHGIDerlrtHREGLPAADFTVFYHLISIERNRDIMLKVALSENDLHV 100

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 499754266 164 PSLTSVWPTADWHERETYDMFGIVYTGHPGLTRIMMPDDWIGHPQRKDYP 213
Cdd:PRK11742 101 PTITKIFPNANWYERETWDMFGITFDGHPHLRRILMPPTWEGHPLRKDYP 150
PRK12494 PRK12494
NAD(P)H-quinone oxidoreductase subunit J;
95-212 6.03e-29

NAD(P)H-quinone oxidoreductase subunit J;


Pssm-ID: 183557 [Multi-domain]  Cd Length: 172  Bit Score: 106.96  E-value: 6.03e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499754266  95 VRRESLVAVGQTLRDDPdlrFELLSSLSGVDY-PddvtGRRLHSVAHLTSMTHRRRVRVEVSV----TDADPTVPSLTSV 169
Cdd:PRK12494  45 VEPDFLLPIATALYAYG---FNYLQCQGGYDEgP----GKELVSFYHLIKVSDNADKPREVRLkvflPRDDPRVPSVYWI 117

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 499754266 170 WPTADWHERETYDMFGIVYTGHPGLTRIMMPDDWIGHPQRKDY 212
Cdd:PRK12494 118 WKGADWQERETYDMYGINFEGHPNLKRILMPEDWVGWPLRKDY 160
PRK13292 PRK13292
NADH-quinone oxidoreductase subunit B/C/D;
82-213 1.07e-26

NADH-quinone oxidoreductase subunit B/C/D;


Pssm-ID: 183955 [Multi-domain]  Cd Length: 788  Bit Score: 107.55  E-value: 1.07e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499754266  82 ERVVVDRGE---LTVHVRRESLVAVGQTLRDDPDLRFELLSSLSGVD---------YPDdvtgrrLHSVAHLTSMTHRRR 149
Cdd:PRK13292 234 DDVRLDEGAtdmLTYRCPPELVPEVLRHLKKRASSPFRRLEDLAAVDescrrdrekFPD------FTVNYHLLSFDTPGH 307

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 499754266 150 VRVEVSVTDADPTVPSLTSVWPTADWHERETYDMFGIVYTGHPGLTRIMMPDDWIGHPQRKDYP 213
Cdd:PRK13292 308 VRIKTELRGRTPELPSATGVFPAANWYEREAFDMFGIRFAGHPNLRRILMPPDWEGHPLRKEHP 371
PRK08491 PRK08491
NADH-quinone oxidoreductase subunit C;
86-216 1.27e-25

NADH-quinone oxidoreductase subunit C;


Pssm-ID: 181449  Cd Length: 263  Bit Score: 100.52  E-value: 1.27e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499754266  86 VDRGELTVHVRRESLVAVGQTLRDdpdLRFELLSSLSGVDYPDDVTGRRLHSvaHLTSMTHRRRVRVEVSVTDADPtVPS 165
Cdd:PRK08491  54 IELDQAVIWIKKDDNFKVLKILKH---LGYECLSEMSAIDFLAKKGGFEVFY--QLLSMSKRKRVRVKCFLKEKEA-LQS 127

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 499754266 166 LTSVWPTADWHERETYDMFGIVYTGHPGLTRIMMPDDWIGHPQRKDYPLGG 216
Cdd:PRK08491 128 VSFLFKSANWSEREMYDMFGIVINNHPYLKRILMPDDWVGHPLLKSYPLKG 178
ndhJ CHL00012
NADH dehydrogenase subunit J
 160-212 6.18e-23

NADH dehydrogenase subunit J


Pssm-ID: 176955 [Multi-domain]  Cd Length: 158  Bit Score: 90.91  E-value: 6.18e-23
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 499754266 160 DPTVPSLTSVWPTADWHERETYDMFGIVYTGHPGLTRIMMPDDWIGHPQRKDY 212
Cdd:CHL00012  94 NPRIPSVFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDY 146
HycE1 COG3262
Ni,Fe-hydrogenase III component G [Energy production and conversion];
78-231 6.12e-17

Ni,Fe-hydrogenase III component G [Energy production and conversion];


Pssm-ID: 442493 [Multi-domain]  Cd Length: 523  Bit Score: 79.22  E-value: 6.12e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499754266  78 GDAVERVVVDRGELTVHVRRESLVAVGQTLRDDPDLRfelLSSLSGVDYPDDVTGRRLHsvAHLTSMTHRRRVRVEVSVT 157
Cdd:COG3262   13 GSILERRWVRPNEVWVEVDREDLPELAEFLAEGGGGR---LAALWGNDERELGGGFAVY--YVFALEGEGALVTLKVSVP 87

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499754266 158 DADPTVPSLTSVWPTADWHERETYDMFGIVYTGHPGLTRIMMPDDWIG--HPQRKDYPLGGIPVDYKGATIPPPDE 231
Cdd:COG3262   88 KDDPVFPSITDLFPAASWYEREIRDLFGIVPEGHPDPRRLVLHDDWPEgiYPLRKDFKGGPRPAPAPAEEYFRPVE 163
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH