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Conserved domains on  [gi|499635887|ref|WP_011316621|]
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MULTISPECIES: hypothetical protein [Nostocaceae]

Protein Classification

DUF488 family protein( domain architecture ID 5507)

DUF488 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF488 super family cl01246
Protein of unknown function, DUF488; This family includes several proteins of uncharacterized ...
 12-113 4.93e-04

Protein of unknown function, DUF488; This family includes several proteins of uncharacterized function.


The actual alignment was detected with superfamily member pfam04343:

Pssm-ID: 470131  Cd Length: 123  Bit Score: 39.59  E-value: 4.93e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499635887   12 IKGEAVSISLyPPKGWTGRHLPLFAPTPELLYWWKSSAKDAIAEQEYKRQFREILDSRQQLIGLwveKQKNNPQDITLCC 91
Cdd:pfam04343  31 FSKEALALDL-AEAGIAYVWLKELGPSRELRKWFHHDPNWDEFFRRYAAELLTPPAFREALDRL---LELARKGPVTLLC 106

                          90       100
                  ....*....|....*....|..
gi 499635887   92 FEKTGDFCHRyqvgeVVVQKYL 113
Cdd:pfam04343 107 AEKDPEHCHR-----VVLADYL 123
 
Name Accession Description Interval E-value
DUF488 pfam04343
Protein of unknown function, DUF488; This family includes several proteins of uncharacterized ...
 12-113 4.93e-04

Protein of unknown function, DUF488; This family includes several proteins of uncharacterized function.


Pssm-ID: 427880  Cd Length: 123  Bit Score: 39.59  E-value: 4.93e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499635887   12 IKGEAVSISLyPPKGWTGRHLPLFAPTPELLYWWKSSAKDAIAEQEYKRQFREILDSRQQLIGLwveKQKNNPQDITLCC 91
Cdd:pfam04343  31 FSKEALALDL-AEAGIAYVWLKELGPSRELRKWFHHDPNWDEFFRRYAAELLTPPAFREALDRL---LELARKGPVTLLC 106

                          90       100
                  ....*....|....*....|..
gi 499635887   92 FEKTGDFCHRyqvgeVVVQKYL 113
Cdd:pfam04343 107 AEKDPEHCHR-----VVLADYL 123
 
Name Accession Description Interval E-value
DUF488 pfam04343
Protein of unknown function, DUF488; This family includes several proteins of uncharacterized ...
 12-113 4.93e-04

Protein of unknown function, DUF488; This family includes several proteins of uncharacterized function.


Pssm-ID: 427880  Cd Length: 123  Bit Score: 39.59  E-value: 4.93e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499635887   12 IKGEAVSISLyPPKGWTGRHLPLFAPTPELLYWWKSSAKDAIAEQEYKRQFREILDSRQQLIGLwveKQKNNPQDITLCC 91
Cdd:pfam04343  31 FSKEALALDL-AEAGIAYVWLKELGPSRELRKWFHHDPNWDEFFRRYAAELLTPPAFREALDRL---LELARKGPVTLLC 106

                          90       100
                  ....*....|....*....|..
gi 499635887   92 FEKTGDFCHRyqvgeVVVQKYL 113
Cdd:pfam04343 107 AEKDPEHCHR-----VVLADYL 123
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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