NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|499569667|ref|WP_011250450|]
View 

MULTISPECIES: DNA-directed RNA polymerase subunit N [Thermococcus]

Protein Classification

similar to DNA-directed RNA polymerase subunit N( domain architecture ID 10004102)

protein similar to DNA-directed RNA polymerase subunit N

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
RPB10 COG1644
DNA-directed RNA polymerase, subunit N (RpoN/RPB10) [Transcription];
1-62 4.14e-39

DNA-directed RNA polymerase, subunit N (RpoN/RPB10) [Transcription];


:

Pssm-ID: 441250  Cd Length: 62  Bit Score: 122.62  E-value: 4.14e-39
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 499569667  1 MIVPVRCFTCGKVLADKYYEFKKRVEAGEDPGKVLDDLGVERYCCRRTLLSHVELIDQVMVY 62
Cdd:COG1644   1 MIIPVRCFTCGKVIGHKWEEFKRRVEAGEDPGKVLDDLGVKRYCCRRMLLSHVELIDEVIPY 62
 
Name Accession Description Interval E-value
RPB10 COG1644
DNA-directed RNA polymerase, subunit N (RpoN/RPB10) [Transcription];
1-62 4.14e-39

DNA-directed RNA polymerase, subunit N (RpoN/RPB10) [Transcription];


Pssm-ID: 441250  Cd Length: 62  Bit Score: 122.62  E-value: 4.14e-39
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 499569667  1 MIVPVRCFTCGKVLADKYYEFKKRVEAGEDPGKVLDDLGVERYCCRRTLLSHVELIDQVMVY 62
Cdd:COG1644   1 MIIPVRCFTCGKVIGHKWEEFKRRVEAGEDPGKVLDDLGVKRYCCRRMLLSHVELIDEVIPY 62
PRK04016 PRK04016
DNA-directed RNA polymerase subunit N; Provisional
 1-62 5.69e-39

DNA-directed RNA polymerase subunit N; Provisional


Pssm-ID: 235200  Cd Length: 62  Bit Score: 122.30  E-value: 5.69e-39
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 499569667  1 MIVPVRCFTCGKVLADKYYEFKKRVEAGEDPGKVLDDLGVERYCCRRTLLSHVELIDQVMVY 62
Cdd:PRK04016  1 MMIPVRCFTCGKVIAEKWEEFKERVEAGEDPGKVLDDLGVKRYCCRRMLLSHVELIDEVIPY 62
RNA_pol_N pfam01194
RNA polymerases N / 8 kDa subunit;
2-59 1.25e-32

RNA polymerases N / 8 kDa subunit;


Pssm-ID: 426114  Cd Length: 58  Bit Score: 106.43  E-value: 1.25e-32
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 499569667   2 IVPVRCFTCGKVLADKYYEFKKRVEAGEDPGKVLDDLGVERYCCRRTLLSHVELIDQV 59
Cdd:pfam01194  1 IIPVRCFTCGKVIGDKWEEYLERLKAGEDPGDALDDLGLKRYCCRRMLLSHVDLIDKL 58
 
Name Accession Description Interval E-value
RPB10 COG1644
DNA-directed RNA polymerase, subunit N (RpoN/RPB10) [Transcription];
1-62 4.14e-39

DNA-directed RNA polymerase, subunit N (RpoN/RPB10) [Transcription];


Pssm-ID: 441250  Cd Length: 62  Bit Score: 122.62  E-value: 4.14e-39
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 499569667  1 MIVPVRCFTCGKVLADKYYEFKKRVEAGEDPGKVLDDLGVERYCCRRTLLSHVELIDQVMVY 62
Cdd:COG1644   1 MIIPVRCFTCGKVIGHKWEEFKRRVEAGEDPGKVLDDLGVKRYCCRRMLLSHVELIDEVIPY 62
PRK04016 PRK04016
DNA-directed RNA polymerase subunit N; Provisional
 1-62 5.69e-39

DNA-directed RNA polymerase subunit N; Provisional


Pssm-ID: 235200  Cd Length: 62  Bit Score: 122.30  E-value: 5.69e-39
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 499569667  1 MIVPVRCFTCGKVLADKYYEFKKRVEAGEDPGKVLDDLGVERYCCRRTLLSHVELIDQVMVY 62
Cdd:PRK04016  1 MMIPVRCFTCGKVIAEKWEEFKERVEAGEDPGKVLDDLGVKRYCCRRMLLSHVELIDEVIPY 62
RNA_pol_N pfam01194
RNA polymerases N / 8 kDa subunit;
2-59 1.25e-32

RNA polymerases N / 8 kDa subunit;


Pssm-ID: 426114  Cd Length: 58  Bit Score: 106.43  E-value: 1.25e-32
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 499569667   2 IVPVRCFTCGKVLADKYYEFKKRVEAGEDPGKVLDDLGVERYCCRRTLLSHVELIDQV 59
Cdd:pfam01194  1 IIPVRCFTCGKVIGDKWEEYLERLKAGEDPGDALDDLGLKRYCCRRMLLSHVDLIDKL 58
PLN00032 PLN00032
DNA-directed RNA polymerase; Provisional
 1-65 4.86e-20

DNA-directed RNA polymerase; Provisional


Pssm-ID: 215034  Cd Length: 71  Bit Score: 74.79  E-value: 4.86e-20
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 499569667  1 MIVPVRCFTCGKVLADKYYEFKKRVEAGEDPGKVLDDLGVERYCCRRTLLSHVELIDQVMVYKVY 65
Cdd:PLN00032  1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTL 65
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH