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Conserved domains on  [gi|499461567|ref|WP_011148712|]
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MULTISPECIES: lipoprotein [Photorhabdus]

Protein Classification

lipoprotein( domain architecture ID 10009443)

lipoprotein similar to Pseudomonas aeruginosa lipopeptide LppL that contains a region that acts as an export signal

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YifL COG5567
Small periplasmic lipoprotein YifL (function unknown) [Function unknown];
1-43 3.75e-13

Small periplasmic lipoprotein YifL (function unknown) [Function unknown];


:

Pssm-ID: 444309  Cd Length: 43  Bit Score: 56.46  E-value: 3.75e-13
                        10        20        30        40
                ....*....|....*....|....*....|....*....|...
gi 499461567  1 MKKKLRGFLAIITLFVLSGCGLKGPLYFPPEQPSTEKATTASQ 43
Cdd:COG5567   1 MKKLLRLLLLLLLLFTLAGCGLKGPLYLPPAEKEKQPSQKQVE 43
 
Name Accession Description Interval E-value
YifL COG5567
Small periplasmic lipoprotein YifL (function unknown) [Function unknown];
1-43 3.75e-13

Small periplasmic lipoprotein YifL (function unknown) [Function unknown];


Pssm-ID: 444309  Cd Length: 43  Bit Score: 56.46  E-value: 3.75e-13
                        10        20        30        40
                ....*....|....*....|....*....|....*....|...
gi 499461567  1 MKKKLRGFLAIITLFVLSGCGLKGPLYFPPEQPSTEKATTASQ 43
Cdd:COG5567   1 MKKLLRLLLLLLLLFTLAGCGLKGPLYLPPAEKEKQPSQKQVE 43
LPAM_2 pfam13627
Prokaryotic lipoprotein-attachment site; In prokaryotes, membrane lipoproteins are synthesized ...
 8-29 4.68e-07

Prokaryotic lipoprotein-attachment site; In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognizes a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached.


Pssm-ID: 433360  Cd Length: 22  Bit Score: 40.83  E-value: 4.68e-07
                         10        20
                 ....*....|....*....|..
gi 499461567   8 FLAIITLFVLSGCGLKGPLYFP 29
Cdd:pfam13627  1 LLLLALLLLLAGCGQKGPLYLP 22
 
Name Accession Description Interval E-value
YifL COG5567
Small periplasmic lipoprotein YifL (function unknown) [Function unknown];
1-43 3.75e-13

Small periplasmic lipoprotein YifL (function unknown) [Function unknown];


Pssm-ID: 444309  Cd Length: 43  Bit Score: 56.46  E-value: 3.75e-13
                        10        20        30        40
                ....*....|....*....|....*....|....*....|...
gi 499461567  1 MKKKLRGFLAIITLFVLSGCGLKGPLYFPPEQPSTEKATTASQ 43
Cdd:COG5567   1 MKKLLRLLLLLLLLFTLAGCGLKGPLYLPPAEKEKQPSQKQVE 43
LPAM_2 pfam13627
Prokaryotic lipoprotein-attachment site; In prokaryotes, membrane lipoproteins are synthesized ...
 8-29 4.68e-07

Prokaryotic lipoprotein-attachment site; In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognizes a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached.


Pssm-ID: 433360  Cd Length: 22  Bit Score: 40.83  E-value: 4.68e-07
                         10        20
                 ....*....|....*....|..
gi 499461567   8 FLAIITLFVLSGCGLKGPLYFP 29
Cdd:pfam13627  1 LLLLALLLLLAGCGQKGPLYLP 22
SERPIN COG4826
Serine protease inhibitor [Posttranslational modification, protein turnover, chaperones];
1-49 1.19e-03

Serine protease inhibitor [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443854 [Multi-domain]  Cd Length: 411  Bit Score: 34.49  E-value: 1.19e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 499461567   1 MKKKLRGFLAIITLFVLSGCGLKGPLYFPPEQ-PSTEKATTASQIPANTE 49
Cdd:COG4826    1 MKRRRLLLLLALLALLLAGCSSSPSSTVSRTAtPSVDAADLAALVAANNA 50
LptE COG2980
Outer membrane lipoprotein LptE/RlpB (LPS assembly) [Cell wall/membrane/envelope biogenesis];
1-31 3.56e-03

Outer membrane lipoprotein LptE/RlpB (LPS assembly) [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442219  Cd Length: 172  Bit Score: 32.96  E-value: 3.56e-03
                         10        20        30
                 ....*....|....*....|....*....|...
gi 499461567   1 MKKKLRGFLAIITLFVLSGCG--LKGPLYFPPE 31
Cdd:COG2980    3 MRRLLALLLLLLAVLLLAGCGfhLRGTTQLPPE 35
GerAC COG5903
Spore germination receptor GerABC, GerC subunit [Cell cycle control, cell division, chromosome ...
 1-20 4.32e-03

Spore germination receptor GerABC, GerC subunit [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 444605  Cd Length: 369  Bit Score: 32.95  E-value: 4.32e-03
                         10        20
                 ....*....|....*....|
gi 499461567   1 MKKKLRGFLAIITLFVLSGC 20
Cdd:COG5903    1 MKKLLLLLLLLLLLLLLTGC 20
PqiC COG3009
Intermembrane transporter PqiABC lipoprotein subunit PqiC [Cell wall/membrane/envelope ...
 1-43 7.68e-03

Intermembrane transporter PqiABC lipoprotein subunit PqiC [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442246 [Multi-domain]  Cd Length: 198  Bit Score: 32.27  E-value: 7.68e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 499461567   1 MKKKLRGFLAIITLFVLSGCGLKGPLYF----PPEQPSTEKATTASQ 43
Cdd:COG3009    1 MKRPLRLLLLLLLALLLAACASSPPTRYytlpPPAAPAAAAAAAAAP 47
NlpA COG1464
ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion ...
 1-24 8.72e-03

ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism];


Pssm-ID: 441073 [Multi-domain]  Cd Length: 270  Bit Score: 32.00  E-value: 8.72e-03
                         10        20
                 ....*....|....*....|....
gi 499461567   1 MKKKLRGFLAIITLFVLSGCGLKG 24
Cdd:COG1464    1 MKKLLALLLALALALALAACGSSS 24
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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