NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|499459346|ref|WP_011146810|]
View 

MULTISPECIES: putrescine export ABC transporter permease SapB [Photorhabdus]

Protein Classification

peptide ABC transporter permease SapB( domain architecture ID 10794134)

peptide ABC transporter permease SapB is part of a putrescine export transport system; does not play a role in resistance to antimicrobial peptides

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PRK15110 PRK15110
peptide ABC transporter permease SapB;
1-321 0e+00

peptide ABC transporter permease SapB;


:

Pssm-ID: 185065 [Multi-domain]  Cd Length: 321  Bit Score: 562.00  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346   1 MIIYTLRRLLLLIITLFFLSLISFSLSYFTPNAPLSGASLFDAYIFYFNSLLLWDFGVSSINGELISEQLREVFPATMEL 80
Cdd:PRK15110   1 MIIFTLRRLLLLIVTLFLLTLVGFSLSYFTPHAPLQGASLWDAWVFWFNGLLHWDFGVSSINGQPISEQLKEVFPATMEL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346  81 CILAFSTALLVGIPLGIIAGVWRNKPADTVIISIALVGFSIPIFWLALLLTLFFSLYLGWLPVSGRFNLLYQIEPVTGFS 160
Cdd:PRK15110  81 CILAFGFALLVGIPVGIIAGVTRHKWQDNLISALALLGFSIPVFWLALLLTLFFSLTLGWLPVSGRFDLLYEVKPVTGFA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346 161 LIDAWLSKSPYRNEMIISAIQHLLLPVITLAVAPTTEVIRLMRNSTEEVFGENYIKAAATRGLSRLTIIRRHVLHNALPP 240
Cdd:PRK15110 161 LIDAWLSDSPWRDEMIMSAIRHMILPVITLAVAPTTEVIRLMRISTIEVYDQNYVKAAATRGLSRFTILRRHVLHNALPP 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346 241 IIPKLGLQFSTMLTLAMMTELVFNWPGLGHWLVSAIRQQDYSAISASVMVIGTLVISVNVLSDIIGAMTNPLKHKEWYAL 320
Cdd:PRK15110 241 VIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLINAIRQQDYAAISAGVMVVGSLVIIVNVLSDILGAMANPLKHKEWYAL 320


                 .
gi 499459346 321 R 321
Cdd:PRK15110 321 R 321
 
Name Accession Description Interval E-value
PRK15110 PRK15110
peptide ABC transporter permease SapB;
1-321 0e+00

peptide ABC transporter permease SapB;


Pssm-ID: 185065 [Multi-domain]  Cd Length: 321  Bit Score: 562.00  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346   1 MIIYTLRRLLLLIITLFFLSLISFSLSYFTPNAPLSGASLFDAYIFYFNSLLLWDFGVSSINGELISEQLREVFPATMEL 80
Cdd:PRK15110   1 MIIFTLRRLLLLIVTLFLLTLVGFSLSYFTPHAPLQGASLWDAWVFWFNGLLHWDFGVSSINGQPISEQLKEVFPATMEL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346  81 CILAFSTALLVGIPLGIIAGVWRNKPADTVIISIALVGFSIPIFWLALLLTLFFSLYLGWLPVSGRFNLLYQIEPVTGFS 160
Cdd:PRK15110  81 CILAFGFALLVGIPVGIIAGVTRHKWQDNLISALALLGFSIPVFWLALLLTLFFSLTLGWLPVSGRFDLLYEVKPVTGFA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346 161 LIDAWLSKSPYRNEMIISAIQHLLLPVITLAVAPTTEVIRLMRNSTEEVFGENYIKAAATRGLSRLTIIRRHVLHNALPP 240
Cdd:PRK15110 161 LIDAWLSDSPWRDEMIMSAIRHMILPVITLAVAPTTEVIRLMRISTIEVYDQNYVKAAATRGLSRFTILRRHVLHNALPP 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346 241 IIPKLGLQFSTMLTLAMMTELVFNWPGLGHWLVSAIRQQDYSAISASVMVIGTLVISVNVLSDIIGAMTNPLKHKEWYAL 320
Cdd:PRK15110 241 VIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLINAIRQQDYAAISAGVMVVGSLVIIVNVLSDILGAMANPLKHKEWYAL 320


                 .
gi 499459346 321 R 321
Cdd:PRK15110 321 R 321
SapB COG4168
ABC-type antimicrobial peptide export system, permease component SapB [Defense mechanisms];
1-321 0e+00

ABC-type antimicrobial peptide export system, permease component SapB [Defense mechanisms];


Pssm-ID: 443329 [Multi-domain]  Cd Length: 321  Bit Score: 505.91  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346   1 MIIYTLRRLLLLIITLFFLSLISFSLSYFTPNAPLSGASLFDAYIFYFNSLLLWDFGVSSINGELISEQLREVFPATMEL 80
Cdd:COG4168    1 MLIYLLRRLNLLLITLLILSLISFSLLYRDPLNPLSDASLFSGYLFYLQNLLQGDFGISSINGEPILEQLLTVFPATLEL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346  81 CILAFSTALLVGIPLGIIAGVWRNKPADTVIISIALVGFSIPIFWLALLLTLFFSLYLGWLPVSGRFNLLYQIEPVTGFS 160
Cdd:COG4168   81 CFLAFLLALLIGIPLGILAGIYRGKWLDKLISSLSLLGFSIPVFWLALLLILFFSLNLGWLPVSGRYNLLYEIPPVTGFA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346 161 LIDAWLSKSPYRNEMIISAIQHLLLPVITLAVAPTTEVIRLMRNSTEEVFGENYIKAAATRGLSRLTIIRRHVLHNALPP 240
Cdd:COG4168  161 LIDAWLSDSPYRLKAIQSALQHLILPTLVLAVAPTTEVIRLTRQSTEEVMNQNYIKAAATRGLSRFTIIRRHVLRNALPP 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346 241 IIPKLGLQFSTMLTLAMMTELVFNWPGLGHWLVSAIRQQDYSAISASVMVIGTLVISVNVLSDIIGAMTNPLKHKEWYAL 320
Cdd:COG4168  241 IIPQLGLQFSTMLTLAMITEVVFSWPGIGRWLINAIRQQDYAAISAGVIVIGTFVIIVNILSDILGALLNPLKRKEWYAL 320


                 .
gi 499459346 321 R 321
Cdd:COG4168  321 R 321
nickel_nikB TIGR02789
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of ...
 44-311 2.83e-50

nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 131836 [Multi-domain]  Cd Length: 314  Bit Score: 169.17  E-value: 2.83e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346   44 YIFYFNSL---LLWDFGVSSINGELISEQLREVFPATMELCILAFSTALLVGIPLGIIAGVWRNKPADTVIISIALVGFS 120
Cdd:TIGR02789  65 YVQYFHWLwnaLHLDFGISYISDRPVLDEIARSLPATLELAGFALVIVVLVSVPLGILAARYRDRLPDHAVRFIIFLGVS 144

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346  121 IPIFWLALLLTLFFSLYLGWLPVSGRfnllyqiepvtgfslidawlskspyrnemiiSAIQHLLLPVITLAVAPTTEVIR 200
Cdd:TIGR02789 145 IPNFWLAFLLVWGFSVYLNLLPTNGA-------------------------------GTWQHLVLPAVTLALMSVSIYAR 193

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346  201 LMRNSTEEVFGENYIKAAATRGLSRLTIIRRHVLHNALPPIIPKLGLQFSTMLTLAMMTELVFNWPGLGHWLVSAIRQQD 280
Cdd:TIGR02789 194 LLRASMLDNMQERYVTYARVRGIKERWVIRRHILRNAILPMITALGMHIGELLGGTFVIENIFSWPGVGRYAISAIFNRD 273

                         250       260       270
                  ....*....|....*....|....*....|.
gi 499459346  281 YSAISASVMVIGTLVISVNVLSDIIGAMTNP 311
Cdd:TIGR02789 274 YPVIQCYTLLMGLLFVFCNLIVDLFQALLDP 304
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 92-311 7.90e-21

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 87.74  E-value: 7.90e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346   92 GIPLGIIAGVWRNKPADTVIISIALVGFSIPIFWLALLLTLFFslylgwlpvsgrfnllyqiepvtgfslidawlskspy 171
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIA------------------------------------- 43

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346  172 rnemIISAIQHLLLPVITLAVAPTTEVIRLMRNSTEEVFGENYIKAAATRGLSRLTIIRRHVLHNALPPIIPKLGLQFST 251
Cdd:pfam00528  44 ----ILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGG 119

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346  252 MLTLAMMTELVFNWPGLGHWLVSAIRQQDYSAISASVMVIGTLVISVNVLSDIIGAMTNP 311
Cdd:pfam00528 120 ALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDP 179
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 74-296 3.21e-13

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 66.92  E-value: 3.21e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346  74 FPATMELCILAFSTALLVGIPLGIIAGvWRNKPADTVIISIALVGFSIPIFWLALLLTLFFSLYLGWlpvsgrfnllyqi 153
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILA-RKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGW------------- 66

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346 154 epvtgfslidawlskspyrnemiiSAIQHLLLPVITLAVAPTTEVIRLMRNSTEEVFGENYIKAAATRGLSRLTIIRRHV 233
Cdd:cd06261   67 ------------------------GILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRII 122

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 499459346 234 LHNALPPIIPKLGLQFSTMLTLAMMTELVFN----WPGLGHWLVSAIRQQDYSAISASVMVIGTLVI 296
Cdd:cd06261  123 LPLALPPILTGLVLAFARALGEFALVSFLGGgeapGPGTGLLLIFAILFPGDLGVAAAVALILLLLS 189
 
Name Accession Description Interval E-value
PRK15110 PRK15110
peptide ABC transporter permease SapB;
1-321 0e+00

peptide ABC transporter permease SapB;


Pssm-ID: 185065 [Multi-domain]  Cd Length: 321  Bit Score: 562.00  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346   1 MIIYTLRRLLLLIITLFFLSLISFSLSYFTPNAPLSGASLFDAYIFYFNSLLLWDFGVSSINGELISEQLREVFPATMEL 80
Cdd:PRK15110   1 MIIFTLRRLLLLIVTLFLLTLVGFSLSYFTPHAPLQGASLWDAWVFWFNGLLHWDFGVSSINGQPISEQLKEVFPATMEL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346  81 CILAFSTALLVGIPLGIIAGVWRNKPADTVIISIALVGFSIPIFWLALLLTLFFSLYLGWLPVSGRFNLLYQIEPVTGFS 160
Cdd:PRK15110  81 CILAFGFALLVGIPVGIIAGVTRHKWQDNLISALALLGFSIPVFWLALLLTLFFSLTLGWLPVSGRFDLLYEVKPVTGFA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346 161 LIDAWLSKSPYRNEMIISAIQHLLLPVITLAVAPTTEVIRLMRNSTEEVFGENYIKAAATRGLSRLTIIRRHVLHNALPP 240
Cdd:PRK15110 161 LIDAWLSDSPWRDEMIMSAIRHMILPVITLAVAPTTEVIRLMRISTIEVYDQNYVKAAATRGLSRFTILRRHVLHNALPP 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346 241 IIPKLGLQFSTMLTLAMMTELVFNWPGLGHWLVSAIRQQDYSAISASVMVIGTLVISVNVLSDIIGAMTNPLKHKEWYAL 320
Cdd:PRK15110 241 VIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLINAIRQQDYAAISAGVMVVGSLVIIVNVLSDILGAMANPLKHKEWYAL 320


                 .
gi 499459346 321 R 321
Cdd:PRK15110 321 R 321
SapB COG4168
ABC-type antimicrobial peptide export system, permease component SapB [Defense mechanisms];
1-321 0e+00

ABC-type antimicrobial peptide export system, permease component SapB [Defense mechanisms];


Pssm-ID: 443329 [Multi-domain]  Cd Length: 321  Bit Score: 505.91  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346   1 MIIYTLRRLLLLIITLFFLSLISFSLSYFTPNAPLSGASLFDAYIFYFNSLLLWDFGVSSINGELISEQLREVFPATMEL 80
Cdd:COG4168    1 MLIYLLRRLNLLLITLLILSLISFSLLYRDPLNPLSDASLFSGYLFYLQNLLQGDFGISSINGEPILEQLLTVFPATLEL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346  81 CILAFSTALLVGIPLGIIAGVWRNKPADTVIISIALVGFSIPIFWLALLLTLFFSLYLGWLPVSGRFNLLYQIEPVTGFS 160
Cdd:COG4168   81 CFLAFLLALLIGIPLGILAGIYRGKWLDKLISSLSLLGFSIPVFWLALLLILFFSLNLGWLPVSGRYNLLYEIPPVTGFA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346 161 LIDAWLSKSPYRNEMIISAIQHLLLPVITLAVAPTTEVIRLMRNSTEEVFGENYIKAAATRGLSRLTIIRRHVLHNALPP 240
Cdd:COG4168  161 LIDAWLSDSPYRLKAIQSALQHLILPTLVLAVAPTTEVIRLTRQSTEEVMNQNYIKAAATRGLSRFTIIRRHVLRNALPP 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346 241 IIPKLGLQFSTMLTLAMMTELVFNWPGLGHWLVSAIRQQDYSAISASVMVIGTLVISVNVLSDIIGAMTNPLKHKEWYAL 320
Cdd:COG4168  241 IIPQLGLQFSTMLTLAMITEVVFSWPGIGRWLINAIRQQDYAAISAGVIVIGTFVIIVNILSDILGALLNPLKRKEWYAL 320


                 .
gi 499459346 321 R 321
Cdd:COG4168  321 R 321
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 44-311 1.96e-78

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 241.51  E-value: 1.96e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346  44 YIFYFNSLLLWDFGVSSINGELISEQLREVFPATMELCILAFSTALLVGIPLGIIAGVWRNKPADTVIISIALVGFSIPI 123
Cdd:COG0601   65 YLDWLGGLLRGDLGTSFVYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPS 144

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346 124 FWLALLLTLFFSLYLGWLPVSGRFNLLyqiepvtgfslidawlskspyrnEMIISAIQHLLLPVITLAVAPTTEVIRLMR 203
Cdd:COG0601  145 FWLGLLLILLFAVKLGWLPVSGRVSPW-----------------------EDFLDALRHLILPALTLALGSLAGIARLTR 201

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346 204 NSTEEVFGENYIKAAATRGLSRLTIIRRHVLHNALPPIIPKLGLQFSTMLTLAMMTELVFNWPGLGHWLVSAIRQQDYSA 283
Cdd:COG0601  202 SSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPVVTVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPV 281

                        250       260
                 ....*....|....*....|....*...
gi 499459346 284 ISASVMVIGTLVISVNVLSDIIGAMTNP 311
Cdd:COG0601  282 VQGIVLLIAVLVVLVNLLVDLLYALLDP 309
PRK10914 PRK10914
dipeptide ABC transporter permease DppB;
40-316 9.90e-59

dipeptide ABC transporter permease DppB;


Pssm-ID: 182834 [Multi-domain]  Cd Length: 339  Bit Score: 191.95  E-value: 9.90e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346  40 LFDAYIFYFNSLLLWDFGVSSINGELISEQLREVFPATMELCILAFSTALLVGIPLGIIAGVWRNKPADTVIISIALVGF 119
Cdd:PRK10914  62 MWQQYLHYIWGVMHGDLGISLKSRIPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGY 141

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346 120 SIPIFWLALLLTLFFSLYLGWLPVSGRFN---LLYQIEPVTGFSLIDAWLSKSPYRnemIISAIQHLLLPVITLAVAPTT 196
Cdd:PRK10914 142 SMPIFWWGMMLIMLVSVHWNLTPVSGRVSdmvFLDDSNPLTGFMLIDTAIWGEDGN---FIDAVAHMILPAIVLGTIPLA 218

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346 197 EVIRLMRNSTEEVFGENYIKAAATRGLSRLTIIRRHVLHNALPPIIPKLGLQFSTMLTLAMMTELVFNWPGLGHWLVSAI 276
Cdd:PRK10914 219 VIVRMTRSSMLEVLGEDYIRTARAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDAL 298

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 499459346 277 RQQDYSAISASVMVIGTLVISVNVLSDIIGAMTNP-LKHKE 316
Cdd:PRK10914 299 QRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPrIRHKK 339
nickel_nikB TIGR02789
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of ...
 44-311 2.83e-50

nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 131836 [Multi-domain]  Cd Length: 314  Bit Score: 169.17  E-value: 2.83e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346   44 YIFYFNSL---LLWDFGVSSINGELISEQLREVFPATMELCILAFSTALLVGIPLGIIAGVWRNKPADTVIISIALVGFS 120
Cdd:TIGR02789  65 YVQYFHWLwnaLHLDFGISYISDRPVLDEIARSLPATLELAGFALVIVVLVSVPLGILAARYRDRLPDHAVRFIIFLGVS 144

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346  121 IPIFWLALLLTLFFSLYLGWLPVSGRfnllyqiepvtgfslidawlskspyrnemiiSAIQHLLLPVITLAVAPTTEVIR 200
Cdd:TIGR02789 145 IPNFWLAFLLVWGFSVYLNLLPTNGA-------------------------------GTWQHLVLPAVTLALMSVSIYAR 193

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346  201 LMRNSTEEVFGENYIKAAATRGLSRLTIIRRHVLHNALPPIIPKLGLQFSTMLTLAMMTELVFNWPGLGHWLVSAIRQQD 280
Cdd:TIGR02789 194 LLRASMLDNMQERYVTYARVRGIKERWVIRRHILRNAILPMITALGMHIGELLGGTFVIENIFSWPGVGRYAISAIFNRD 273

                         250       260       270
                  ....*....|....*....|....*....|.
gi 499459346  281 YSAISASVMVIGTLVISVNVLSDIIGAMTNP 311
Cdd:TIGR02789 274 YPVIQCYTLLMGLLFVFCNLIVDLFQALLDP 304
PRK15081 PRK15081
glutathione ABC transporter permease GsiC; Provisional
 44-311 1.85e-43

glutathione ABC transporter permease GsiC; Provisional


Pssm-ID: 185039 [Multi-domain]  Cd Length: 306  Bit Score: 151.40  E-value: 1.85e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346  44 YIFYFNSLLLWDFGVSSINGELISEQLREVFPATMELCILAFSTALLVGIPLGIIAGVWRNKPADTVIISIALVGFSIPI 123
Cdd:PRK15081  65 FWHYISNALQGDFGTSMVSRRPVSEEIASRFMPTLWLTITSMVWAVIFGMAIGIASAVWRNRWPDRLGMTLAVSGISFPA 144

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346 124 FWLALLLTLFFSLYLGWLPVSGRfnllyqiepvtgfsliDAWlskspyrnemiisaiQHLLLPVITLAVAPTTEVIRLMR 203
Cdd:PRK15081 145 FALGMLLMQVFSVELGWLPTVGA----------------DSW---------------QHYILPSLTLGAAVAAVMARFTR 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346 204 NSTEEVFGENYIKAAATRGLSRLTIIRRHVLHNALPPIIPKLGLQFSTMLTLAMMTELVFNWPGLGHWLVSAIRQQDYSA 283
Cdd:PRK15081 194 ASFVEVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPV 273

                        250       260
                 ....*....|....*....|....*...
gi 499459346 284 ISASVMVIGTLVISVNVLSDIIGAMTNP 311
Cdd:PRK15081 274 IQAEVLLFSLEFILINLVVDVLYAAINP 301
PRK10352 PRK10352
nickel transporter permease NikB; Provisional
 40-311 1.21e-41

nickel transporter permease NikB; Provisional


Pssm-ID: 182400 [Multi-domain]  Cd Length: 314  Bit Score: 146.77  E-value: 1.21e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346  40 LFDAYIFYFNSLLLWDFGVSSINGELISEQLREVFPATMELCILAFSTALLVGIPLGIIAGVWRNKPADTVIISIALVGF 119
Cdd:PRK10352  64 LYVQYGTWLWKALHLDFGISFATQRPVLDDLLNFLPATLELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGV 143

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346 120 SIPIFWLALLLTLFFSLYLGWLPVSGRFNLlyqiepvtgfslidawlskspyrnemiisaiQHLLLPVITLAVAPTTEVI 199
Cdd:PRK10352 144 SMPNFWLAFLLVMAFSVYLQWLPAMGYGGW-------------------------------QHIILPAVSIAFMSLAINA 192

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346 200 RLMRNSTEEVFGENYIKAAATRGLSRLTIIRRHVLHNALPPIIPKLGLQFSTMLTLAMMTELVFNWPGLGHWLVSAIRQQ 279
Cdd:PRK10352 193 RLLRASMLEVAGQRHVTWARLRGLSERQVERRHILRNASLPMITAVGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNR 272

                        250       260       270
                 ....*....|....*....|....*....|..
gi 499459346 280 DYSAISASVMVIGTLVISVNVLSDIIGAMTNP 311
Cdd:PRK10352 273 DYPVIQCFTLMMVVVFVVCNLIVDLLNAALDP 304
oppB PRK09471
oligopeptide ABC transporter permease OppB;
22-311 7.09e-33

oligopeptide ABC transporter permease OppB;


Pssm-ID: 181886 [Multi-domain]  Cd Length: 306  Bit Score: 123.25  E-value: 7.09e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346  22 ISFSLSYFTPNAPLSGAS-------------------LFDAYIFYFNSLLLWDFGVS------SINgELISEqlreVFPA 76
Cdd:PRK09471  22 ISFFMMRLAPGSPFTGERtlppevmanieakyhlndpIMTQYFSYLKQLAHGDFGPSfkykdySVN-DLVAS----SFPV 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346  77 TMELCILAFSTALLVGIPLGIIAGVWRNKPADTVIISIALVGFSIPIFWLALLLTLFFSLYLGWLPVSGrfnllyqiepv 156
Cdd:PRK09471  97 SAKLGAAAFFLAVILGVSAGVIAALKQNTKWDYTVMGFAMTGVVIPSFVVAPLLVLIFAITLHWLPGGG----------- 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346 157 tgfslidaWLSKSPyrnemiisaiQHLLLPVITLAVAPTTEVIRLMRNSTEEVFGENYIKAAATRGLSRLTIIRRHVLHN 236
Cdd:PRK09471 166 --------WNGGAL----------KFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILRHALKP 227

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 499459346 237 ALPPIIPKLGLQFSTMLTLAMMTELVFNWPGLGHWLVSAIRQQDYSAISASVMVIGTLVISVNVLSDIIGAMTNP 311
Cdd:PRK09471 228 ALLPVLSYMGPAFVGIITGSMVIETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDP 302
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 92-311 7.90e-21

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 87.74  E-value: 7.90e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346   92 GIPLGIIAGVWRNKPADTVIISIALVGFSIPIFWLALLLTLFFslylgwlpvsgrfnllyqiepvtgfslidawlskspy 171
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIA------------------------------------- 43

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346  172 rnemIISAIQHLLLPVITLAVAPTTEVIRLMRNSTEEVFGENYIKAAATRGLSRLTIIRRHVLHNALPPIIPKLGLQFST 251
Cdd:pfam00528  44 ----ILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGG 119

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346  252 MLTLAMMTELVFNWPGLGHWLVSAIRQQDYSAISASVMVIGTLVISVNVLSDIIGAMTNP 311
Cdd:pfam00528 120 ALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDP 179
PRK15133 PRK15133
microcin C ABC transporter permease YejB; Provisional
 52-311 9.26e-18

microcin C ABC transporter permease YejB; Provisional


Pssm-ID: 185087 [Multi-domain]  Cd Length: 364  Bit Score: 82.87  E-value: 9.26e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346  52 LLW-----DFGVSSINGELISEQLREVFPATMELCILAFSTALLVGIPLGIIAGVWRNKPADTVIISIALVGFSIPIFWL 126
Cdd:PRK15133 106 MLWdyirfDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAVRNGSRFDVWSSAFIIIGYAIPAFLF 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346 127 ALLLTLFFS--LYLGWLP----VSGRFNLLyqiepvtgfslidAWLSKspyrnemIISAIQHLLLPVITLAVAPTTEVIR 200
Cdd:PRK15133 186 AILLIVFFAggSYFDLFPlrglVSANFDSL-------------PWYQK-------ITDYLWHITLPVLATVIGGFAALTM 245

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346 201 LMRNSTEEVFGENYIKAAATRGLSRLTIIRRHVLHNALPPIIPKLGLQFSTM-LTLAMMTELVFNWPGLGHWLVSAIRQQ 279
Cdd:PRK15133 246 LTKNSFLDEIRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAGFPATFISMfFTGSLLIEVMFSLNGLGLLGYEATVSR 325

                        250       260       270
                 ....*....|....*....|....*....|..
gi 499459346 280 DYSAISASVMVIGTLVISVNVLSDIIGAMTNP 311
Cdd:PRK15133 326 DYPVMFGTLYIFTLIGLLLNIVSDISYTLVDP 357
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 74-296 3.21e-13

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 66.92  E-value: 3.21e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346  74 FPATMELCILAFSTALLVGIPLGIIAGvWRNKPADTVIISIALVGFSIPIFWLALLLTLFFSLYLGWlpvsgrfnllyqi 153
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILA-RKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGW------------- 66

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346 154 epvtgfslidawlskspyrnemiiSAIQHLLLPVITLAVAPTTEVIRLMRNSTEEVFGENYIKAAATRGLSRLTIIRRHV 233
Cdd:cd06261   67 ------------------------GILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRII 122

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 499459346 234 LHNALPPIIPKLGLQFSTMLTLAMMTELVFN----WPGLGHWLVSAIRQQDYSAISASVMVIGTLVI 296
Cdd:cd06261  123 LPLALPPILTGLVLAFARALGEFALVSFLGGgeapGPGTGLLLIFAILFPGDLGVAAAVALILLLLS 189
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 77-256 8.62e-10

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 58.59  E-value: 8.62e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346  77 TMELCILAFSTALLVGIPLGIIAGVWRNKpADTVIISIALVGFSIPifwlALLLTLFFSLYLGwlpvSGRFNLlyqiepv 156
Cdd:COG1173   81 SLLVGLLAVLIALVIGVLLGLLAGYFGGW-VDAVLMRLVDVLLAFP----SLLLAIALVAVLG----PGLLNV------- 144

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346 157 tgfslidawlskspyrnemiisaiqhlllpVITLAVAPTTEVIRLMRNSTEEVFGENYIKAAATRGLSRLTIIRRHVLHN 236
Cdd:COG1173  145 ------------------------------ILALGLTGWPGYARLVRAQVLSLREREYVEAARALGASPLRIIFRHILPN 194

                        170       180
                 ....*....|....*....|.
gi 499459346 237 ALPPIIPKLGLQFST-MLTLA 256
Cdd:COG1173  195 VLPPLIVQATLGIASaILAEA 215
PRK09881 PRK09881
D,D-dipeptide ABC transporter permease;
199-256 1.47e-05

D,D-dipeptide ABC transporter permease;


Pssm-ID: 182131 [Multi-domain]  Cd Length: 296  Bit Score: 45.96  E-value: 1.47e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 499459346 199 IRLMRNSTEEVFGENYIKAAATRGLSRLTIIRRHVLHNALPPIIPKLGLQFSTMLTLA 256
Cdd:PRK09881 172 VRLARGQALVVRQYTYVQAAKTFGASRWHLISWHILRNSLPPLIVQASLDIGSAILMA 229
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 76-301 1.76e-04

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 42.44  E-value: 1.76e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346  76 ATMELCILAFSTALLVGIPLGIIAGvwRNKPADTVIISIALVGFSIPIFWLALLLTLFFslylgwlpvsgrfnllyqiep 155
Cdd:COG0600   65 ASLLRVLLGFALAALLGVPLGLLLG--LSRLLRRLLDPLLVFLRPIPPLALAPLLILWF--------------------- 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459346 156 vtgfslidawlsksPYRNEMIISAIQHLLLPVITLAvapTTEVIRLMRnsteevfgENYIKAAATRGLSRLTIIRRHVLH 235
Cdd:COG0600  122 --------------GIGEASKIFVIFLGAFFPILLN---TAAGVRSVD--------PELLELARSLGASRWQILRKVVLP 176

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499459346 236 NALPPIIPKLGLQFSTMLTLAMMTELVFNWPGLGHWLVSAIRQQDYSAISASVMVIGTLVISVNVL 301
Cdd:COG0600  177 AALPYIFTGLRIALGLAWIGLVVAELLGASSGLGYLILDARQLLDTDLVFAAILVIGLLGLLLDLL 242
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH