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Conserved domains on  [gi|499459324|ref|WP_011146788|]
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MULTISPECIES: DUF333 domain-containing protein [Photorhabdus]

Protein Classification

DUF333 domain-containing protein( domain architecture ID 10006879)

DUF333 domain-containing protein similar to Escherichia coli YdbJ and YoaF

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Hlx COG3042
Putative hemolysin [General function prediction only];
14-103 2.91e-18

Putative hemolysin [General function prediction only];


:

Pssm-ID: 442276  Cd Length: 82  Bit Score: 72.38  E-value: 2.91e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459324  14 LLGVLFSIAVLAGCSRQTGKTATQyqgiqysqpensqPAVALRDNARAICSYVGGMPALAIQLNGAQIPVCQLANGKRCD 93
Cdd:COG3042    6 LLLLLAAALLLAGCSSSQPNAPPP-------------PQIGMANPASVYCVQQGGTLEIRKQLDGGQVGMCQLPDGRRCE 72

                         90
                 ....*....|
gi 499459324  94 ERALLQGSCA 103
Cdd:COG3042   73 EWALYRGDCP 82
 
Name Accession Description Interval E-value
Hlx COG3042
Putative hemolysin [General function prediction only];
14-103 2.91e-18

Putative hemolysin [General function prediction only];


Pssm-ID: 442276  Cd Length: 82  Bit Score: 72.38  E-value: 2.91e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459324  14 LLGVLFSIAVLAGCSRQTGKTATQyqgiqysqpensqPAVALRDNARAICSYVGGMPALAIQLNGAQIPVCQLANGKRCD 93
Cdd:COG3042    6 LLLLLAAALLLAGCSSSQPNAPPP-------------PQIGMANPASVYCVQQGGTLEIRKQLDGGQVGMCQLPDGRRCE 72

                         90
                 ....*....|
gi 499459324  94 ERALLQGSCA 103
Cdd:COG3042   73 EWALYRGDCP 82
DUF333 pfam03891
Domain of unknown function (DUF333); This small domain of about 70 residues is found in a ...
 59-101 1.59e-12

Domain of unknown function (DUF333); This small domain of about 70 residues is found in a number of bacterial proteins. It is found at the N-terminus the of Swiss:O28332 protein. The proteins containing this domain are uncharacterized.


Pssm-ID: 427572  Cd Length: 46  Bit Score: 56.86  E-value: 1.59e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 499459324   59 ARAICSYVGGMPALAIQLNGAQIPVCQLANGKRCDERALLQGS 101
Cdd:pfam03891   4 ASVYCVQQGGKLEIVKDADGGQVGYCVLPDGKRCEEWALYRGD 46
 
Name Accession Description Interval E-value
Hlx COG3042
Putative hemolysin [General function prediction only];
14-103 2.91e-18

Putative hemolysin [General function prediction only];


Pssm-ID: 442276  Cd Length: 82  Bit Score: 72.38  E-value: 2.91e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499459324  14 LLGVLFSIAVLAGCSRQTGKTATQyqgiqysqpensqPAVALRDNARAICSYVGGMPALAIQLNGAQIPVCQLANGKRCD 93
Cdd:COG3042    6 LLLLLAAALLLAGCSSSQPNAPPP-------------PQIGMANPASVYCVQQGGTLEIRKQLDGGQVGMCQLPDGRRCE 72

                         90
                 ....*....|
gi 499459324  94 ERALLQGSCA 103
Cdd:COG3042   73 EWALYRGDCP 82
DUF333 pfam03891
Domain of unknown function (DUF333); This small domain of about 70 residues is found in a ...
 59-101 1.59e-12

Domain of unknown function (DUF333); This small domain of about 70 residues is found in a number of bacterial proteins. It is found at the N-terminus the of Swiss:O28332 protein. The proteins containing this domain are uncharacterized.


Pssm-ID: 427572  Cd Length: 46  Bit Score: 56.86  E-value: 1.59e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 499459324   59 ARAICSYVGGMPALAIQLNGAQIPVCQLANGKRCDERALLQGS 101
Cdd:pfam03891   4 ASVYCVQQGGKLEIVKDADGGQVGYCVLPDGKRCEEWALYRGD 46
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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