|
Name |
Accession |
Description |
Interval |
E-value |
| PRK12538 |
PRK12538 |
RNA polymerase sigma factor; Provisional |
1-232 |
1.23e-140 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 139048 [Multi-domain] Cd Length: 233 Bit Score: 393.07 E-value: 1.23e-140
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 1 MSFAVDVFARAEAEIATTITSE--ANAPVIASASIAPDGEPVAaDVVFDEDSELLDRLAADDETAFRMLVERHIDRAYAI 78
Cdd:PRK12538 1 MNYALDVLAPAEAAPATTAPSPivAEAPDAASVSIVPDPPPVA-DAVFDEDEELLDRLATDDEAAFRLLVERHIDRAYAI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 79 ALRIVGNAADAEDVVQDSMLKIWSHRGRWQHGRAKFSTWLYRVISNRCIDLRRKPRTENVDTVPEVADGRPDASRVIERN 158
Cdd:PRK12538 80 ALRIVGNRADAEDVVQDTMLKVWTHRGRWQHGRAKFSTWLYRVVSNRCIDLRRKPRTENVDAVPEVADGKPDAVSVIERN 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 499399008 159 ELNGMLEEAMQRLPEQQRIAVILSYHEDMSNGEIAEVMDSTVAAVESLLKRGRQQLRQLLRRHERDIRTAFTDC 232
Cdd:PRK12538 160 ELSDLLEAAMQRLPEQQRIAVILSYHENMSNGEIAEVMDTTVAAVESLLKRGRQQLRDLLRRHERDIRHAFTDC 233
|
|
| PRK05602 |
PRK05602 |
RNA polymerase sigma factor; Reviewed |
47-210 |
1.07e-56 |
|
RNA polymerase sigma factor; Reviewed
Pssm-ID: 235530 [Multi-domain] Cd Length: 186 Bit Score: 178.31 E-value: 1.07e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 47 DEDSELLDRLAADDETAFRMLVERHIDRAYAIALRIVGNAADAEDVVQDSMLKIWSHRGRWQHGRAKFSTWLYRVISNRC 126
Cdd:PRK05602 5 DPDEELLARVAAGDPAAFRVLVARKLPRLLALATRMLGDPAEAEDVAQETFLRIWKQAPSWRPGEARFDTWLHRVVLNLC 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 127 IDLRRKPRTENVDTVPEVADGRPDASRVIERNELNGMLEEAMQRLPEQQRIAVILSYHEDMSNGEIAEVMDSTVAAVESL 206
Cdd:PRK05602 85 YDRLRRRREVPVEDAPDVPDPAPGPDAGLEARQRARRVEQALAALPERQREAIVLQYYQGLSNIEAAAVMDISVDALESL 164
|
....
gi 499399008 207 LKRG 210
Cdd:PRK05602 165 LARG 168
|
|
| RpoE |
COG1595 |
DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]; ... |
48-210 |
3.44e-48 |
|
DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]; DNA-directed RNA polymerase specialized sigma subunit, sigma24 family is part of the Pathway/BioSystem: RNA polymerase
Pssm-ID: 441203 [Multi-domain] Cd Length: 181 Bit Score: 156.69 E-value: 3.44e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 48 EDSELLDRLAADDETAFRMLVERHIDRAYAIALRIVGNAADAEDVVQDSMLKIWSHRGRWQhGRAKFSTWLYRVISNRCI 127
Cdd:COG1595 3 SDEELLERLRAGDEAAFEELYERYRPRLYRYARRLLGDRADAEDLVQETFLRLWRKLDSFR-GRGSFRAWLYRIARNLAI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 128 DLRRKPRTENV---DTVPEVADGRPDASRVIERNELNGMLEEAMQRLPEQQRIAVILSYHEDMSNGEIAEVMDSTVAAVE 204
Cdd:COG1595 82 DHLRKRRRRRElldELAEELPDEAADPEEALEAEELLEALLAALERLPPRQREVLVLRYLEGLSYAEIAEILGISEGTVK 161
|
....*.
gi 499399008 205 SLLKRG 210
Cdd:COG1595 162 SRLSRA 167
|
|
| Sig70_bacteroi1 |
TIGR02985 |
RNA polymerase sigma-70 factor, Bacteroides expansion family 1; This group of sigma factors ... |
62-210 |
6.27e-46 |
|
RNA polymerase sigma-70 factor, Bacteroides expansion family 1; This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found primarily in the genus Bacteroides. This family appears to have resulted from a lineage-specific expansion as B. thetaiotaomicron VPI-5482, Bacteroides forsythus ATCC 43037, Bacteroides fragilis YCH46 and Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23 members, respectively. There are currentlyonly two known members of this family outside of the Bacteroides, in Rhodopseudomonas and Bradyrhizobium.
Pssm-ID: 274376 [Multi-domain] Cd Length: 161 Bit Score: 150.02 E-value: 6.27e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 62 TAFRMLVERHIDRAYAIALRIVGNAADAEDVVQDSMLKIWSHRGRWqHGRAKFSTWLYRVISNRCID-LRRKPRTENVDT 140
Cdd:TIGR02985 1 EAFEQLYRRYYPKLCAFARRYVKDEEDAEDIVQDVFLKLWENRETL-EISESIKAYLFTIVKNRCLNyLRHKQVEEKYQE 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499399008 141 vpEVADGRPDASRV------IERNELNGMLEEAMQRLPEQQRIAVILSYHEDMSNGEIAEVMDSTVAAVESLLKRG 210
Cdd:TIGR02985 80 --ELAEIEERELSEadpeeeLEAKELEEIIEEAIEKLPEQCREIFILSRFEGLSNKEIAEELGISVKTVEYHITKA 153
|
|
| PRK12524 |
PRK12524 |
RNA polymerase sigma factor; Provisional |
36-210 |
1.48e-41 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183573 [Multi-domain] Cd Length: 196 Bit Score: 140.02 E-value: 1.48e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 36 DGEPVAADVvfdEDSELLDRLAADDETAFRMLVERHIDRAYAIALRIVGNAADAEDVVQDSMLKIWSHRGRWQHGRAKFS 115
Cdd:PRK12524 3 MPFDALSDV---SDEALLVLYANGDPAAARALTLRLAPRALAVATRVLGDRAEAEDVTQEAMLRLWRIAPDWRQGEARVS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 116 TWLYRVISNRCIDLRRKPRTENV--DTVPEVADGRPDASRVIERNELNGMLEEAMQRLPEQQRIAVILSYHEDMSNGEIA 193
Cdd:PRK12524 80 TWLYRVVCNLCTDRLRRRRRASVdlDDAPEPADAAPGAEEALIEGDRMRALDAALAALPERQRQAVVLRHIEGLSNPEIA 159
|
170
....*....|....*..
gi 499399008 194 EVMDSTVAAVESLLKRG 210
Cdd:PRK12524 160 EVMEIGVEAVESLTARG 176
|
|
| sigma70-ECF |
TIGR02937 |
RNA polymerase sigma factor, sigma-70 family; This model encompasses all varieties of the ... |
63-210 |
6.47e-36 |
|
RNA polymerase sigma factor, sigma-70 family; This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.
Pssm-ID: 274357 [Multi-domain] Cd Length: 158 Bit Score: 124.38 E-value: 6.47e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 63 AFRMLVERHIDRAYAIALRIVGNAADAEDVVQDSMLKIWSHRGRWQhGRAKFSTWLYRVISNRCIDLRRKPR--TENVDT 140
Cdd:TIGR02937 2 AFEELYERYLPLVYRYARRYLGDDADAEDLVQEAFLKLLEALDRFD-PEGSFKAWLFRIARNLILDYLRRKRrlRRELDL 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 141 VPEVADGRPDASRVIERNELNGMLEEAMQRLPEQQRIAVILSYHEDMSNGEIAEVMDSTVAAVESLLKRG 210
Cdd:TIGR02937 81 LEELLDSDPSPEEELEQEEEREALREALEKLPEREREVLVLRYLEGLSYKEIAEILGISVGTVKRRLKRA 150
|
|
| PRK09652 |
PRK09652 |
RNA polymerase sigma factor RpoE; Provisional |
53-210 |
8.39e-32 |
|
RNA polymerase sigma factor RpoE; Provisional
Pssm-ID: 236608 [Multi-domain] Cd Length: 182 Bit Score: 114.52 E-value: 8.39e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 53 LDRLAADDETAFRMLVERHIDRAYAIALRIVGNAADAEDVVQDSMLKIWSHRGRWQhGRAKFSTWLYRVISNRCID---- 128
Cdd:PRK09652 1 VERVQRGDRAAFALLVRRYQPRVKRLLSRLTRDPADAEDLVQETFIKAYRALHSFR-GGAAFYTWLYRIARNTAINylrk 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 129 LRRKPRTENVDT-------VPEVADGRPDASRVIERNELNGMLEEAMQRLPEQQRIAVILSYHEDMSNGEIAEVMDSTVA 201
Cdd:PRK09652 80 QGRRPPASDVDAeeaedfdLADALRDISTPENELLSAELEQRVRAAIESLPEELRTAITLREIEGLSYEEIAEIMGCPIG 159
|
....*....
gi 499399008 202 AVESLLKRG 210
Cdd:PRK09652 160 TVRSRIFRA 168
|
|
| PRK09641 |
PRK09641 |
RNA polymerase sigma factor SigW; Provisional |
49-214 |
7.05e-29 |
|
RNA polymerase sigma factor SigW; Provisional
Pssm-ID: 182012 [Multi-domain] Cd Length: 187 Bit Score: 107.09 E-value: 7.05e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 49 DSELLDRLAADDETAFRMLVERHIDRAYAIALRIVGNAADAEDVVQDSMLKIWSHRGRWQHGRaKFSTWLYRVISNRCID 128
Cdd:PRK09641 5 IKRLIKQVKKGDQNAFAELVDLYKDKIYQLCYRMLGNRHEAEDAAQEAFIRAYVNIDSYDINR-KFSTWLYRIATNLTID 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 129 -LR-RKPR---------TENVDTVPEVADGRPDASRVIERNELNGMLEEAMQRLPEQQRIAVILSYHEDMSNGEIAEVMD 197
Cdd:PRK09641 84 rLRkRKPDyyldaevagTEGLTMYSQLAADDALPEEQVVSLELQETIQEAILQLPEKYRTVIVLKYIEDLSLKEISEILD 163
|
170
....*....|....*..
gi 499399008 198 STVAAVESLLKRGRQQL 214
Cdd:PRK09641 164 LPVGTVKTRIHRGREAL 180
|
|
| PRK11924 |
PRK11924 |
RNA polymerase sigma factor; Provisional |
50-210 |
8.63e-28 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183384 [Multi-domain] Cd Length: 179 Bit Score: 103.90 E-value: 8.63e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 50 SELLDRLAADDETAFRMLVERHIDRAYAIALRIVGNAADAEDVVQDSMLKIWSHRgRWQHGRAKFSTWLYRVISNRCIDL 129
Cdd:PRK11924 1 GQLMPVDATGDKEAFSELFRPHAPDLLRYARRQLGDRALAEDAVQEAFLRAWRKA-DLFNGKGSARTWLLTIARNVCYDL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 130 RRKPRTENVDTV-----PEVADGRPDASRVIERNELNGMLEEAMQRLPEQQRIAVILSYHEDMSNGEIAEVMDSTVAAVE 204
Cdd:PRK11924 80 LRRRRREKAVLSddalePEFAETAETPEAALLAKDDLARIDRCLDALPVKQREVFLLRYVEGLSYREIAEILGVPVGTVK 159
|
....*.
gi 499399008 205 SLLKRG 210
Cdd:PRK11924 160 SRLRRA 165
|
|
| PRK12513 |
PRK12513 |
RNA polymerase sigma factor; Provisional |
49-208 |
7.50e-26 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183566 [Multi-domain] Cd Length: 194 Bit Score: 99.38 E-value: 7.50e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 49 DSELLDRLAADDETAFRMLVERHIDRAYAIALRIVGNAADAEDVVQDSMLKIWSHRGRWQHgRAKFSTWLYRVISNRCID 128
Cdd:PRK12513 13 DEALMLRYRAGDAAAFEALYARHRTGLYRFLLRLARDRALAEDIFQETWLRVIRARAQYQP-RARFRTWLYQIARNLLID 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 129 ------LRRKPRTENVDTVPEVADGRPDASRVIERNELNGMLEEAMQRLPEQQRIAVILSYHEDMSNGEIAEVMDSTVAA 202
Cdd:PRK12513 92 hwrrhgARQAPSLDADEQLHALADDGAAPEQQLSLFRDRRRLQAALETLPDEQREVFLLREHGDLELEEIAELTGVPEET 171
|
....*.
gi 499399008 203 VESLLK 208
Cdd:PRK12513 172 VKSRLR 177
|
|
| PRK09643 |
PRK09643 |
RNA polymerase sigma factor SigM; Reviewed |
49-210 |
8.41e-25 |
|
RNA polymerase sigma factor SigM; Reviewed
Pssm-ID: 236604 [Multi-domain] Cd Length: 192 Bit Score: 96.70 E-value: 8.41e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 49 DSELLDRLAADDETAFRMLVERHIDRAYAIALRIVGNAADAEDVVQDSMLKIWSHRGRWQhGRAKFSTWLYRVISNRCID 128
Cdd:PRK09643 14 DAELLAAHVAGDRYAFGELFRRHHRRLWAVARRTSGTREDAADALQDAMLSAHRAAGSFR-GDAAVSSWLHRIVVNACLD 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 129 LRRKPRTENVDTVPEVADGRPDASRVIERNELNGMLEEAMQRLPEQQRIAVILSYHEDMSNGEIAEVMDSTVAAVESLLK 208
Cdd:PRK09643 93 RLRRAKARPTVPLDDVYPVAQLERDPTARVETALAVQRALMRLPVEQRAALVAVDMQGYSVADAARMLGVAEGTVKSRCA 172
|
..
gi 499399008 209 RG 210
Cdd:PRK09643 173 RG 174
|
|
| PRK08241 |
PRK08241 |
RNA polymerase subunit sigma-70; |
51-209 |
1.59e-22 |
|
RNA polymerase subunit sigma-70;
Pssm-ID: 236196 [Multi-domain] Cd Length: 339 Bit Score: 93.85 E-value: 1.59e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 51 ELLDRLAADDETAFRMLVERHIDRAYAIALRIVGNAADAEDVVQDSMLKIWSHRGRWQhGRAKFSTWLYRVISNRCID-L 129
Cdd:PRK08241 8 ALLARAAAGDRDAFAALVEPHRRELLAHCYRMLGSVHDAEDAVQETLLRAWRGYDRFE-GRSSLRTWLYRIATNVCLDaL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 130 RRKPR--------------TENVDTVPEVA------DGRPD------ASRVIERNELNGMLEEAMQRLPEQQRIAVILSY 183
Cdd:PRK08241 87 EGRARrplptdlgapaadpVDELVERPEVPwlepypDALLDpaaadpAARVVARESVRLAFVAALQHLPPRQRAVLILRD 166
|
170 180
....*....|....*....|....*.
gi 499399008 184 HEDMSNGEIAEVMDSTVAAVESLLKR 209
Cdd:PRK08241 167 VLGWSAAEVAELLDTSVAAVNSALQR 192
|
|
| PRK11922 |
PRK11922 |
RNA polymerase sigma factor; Provisional |
33-209 |
3.50e-21 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237024 [Multi-domain] Cd Length: 231 Bit Score: 88.10 E-value: 3.50e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 33 IAPDGEPVAADVVFDEDSELLDRLAADDETAFRMLVERHIDRAYAIALRIVGNAADAEDVVQDSMLKIWSHRGRWQhGRA 112
Cdd:PRK11922 1 MTTAPASRPPPLSAASDRELVARVLAGDEAAFEALMRRHNRRLYRTARAILRNDAEAEDVVQEAYLRAFRALGTFR-GDA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 113 KFSTWLYRVISNRCID-LRRKPRTENVDTVP-----------EVADGRPDASRVIERNELNGMLEEAMQRLPEQQRIAVI 180
Cdd:PRK11922 80 SLSTWLSRIVLNEALGrLRRRRRLVNLAEMVmastiaggertPLADPAEDPERAAARREIRALLERAIDALPDAFRAVFV 159
|
170 180
....*....|....*....|....*....
gi 499399008 181 LSYHEDMSNGEIAEVMDSTVAAVESLLKR 209
Cdd:PRK11922 160 LRVVEELSVEETAQALGLPEETVKTRLHR 188
|
|
| PRK09638 |
PRK09638 |
RNA polymerase sigma factor SigY; Reviewed |
48-210 |
7.98e-20 |
|
RNA polymerase sigma factor SigY; Reviewed
Pssm-ID: 182010 [Multi-domain] Cd Length: 176 Bit Score: 83.15 E-value: 7.98e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 48 EDSELLDRLAADDETAFRMLVERHIDRAYAIALRIVGNAADAEDVVQDSMLKIWSHRGRWQhGRAKFSTWLYRVISNRCI 127
Cdd:PRK09638 4 DEKELIQKAKKGDDAALTTLFQQHYSFLYKYLLKLTLDPDLAEDLVQETMLKAIENLSSFQ-GRSKFSTWLISIASRLYK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 128 D-LRRKPRTENVDTvpEVADGRPDASRV---IERNELNGMLeEAMQRLPEQQRIAVILSYHEDMSNGEIAEVMDSTVAAV 203
Cdd:PRK09638 83 DhLRKQKREKLRLQ--RAKEETLRKEKWeaaIKGAEWSEML-DALSKLDPEFRAPVILKHYYGYTYEEIAKMLNIPEGTV 159
|
....*..
gi 499399008 204 ESLLKRG 210
Cdd:PRK09638 160 KSRVHHG 166
|
|
| PRK12515 |
PRK12515 |
RNA polymerase sigma factor; Provisional |
49-207 |
1.95e-19 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183567 [Multi-domain] Cd Length: 189 Bit Score: 82.47 E-value: 1.95e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 49 DSELLDRLAADDETAFRMLVERHIDRAYAIALRIVGNAADAEDVVQDSMLKIWSHRGRWQhGRAKFSTWLYRVISNRCID 128
Cdd:PRK12515 9 DEMLLARIAQGDRTAMQTLYGRHHVRVYRFGLRLVRDEQTAEDLVSEVFLDVWRQAGQFE-GRSQVSTWLLSIARFKALS 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 129 LRRKPRTENVD--TVPEVADGRPDASRVIERNELNGMLEEAMQRLPEQQRIAVILSYHEDMSNGEIAEVMDSTVAAVESL 206
Cdd:PRK12515 88 ALRRRKHEEIDdeAAAAIEDGADTPEVALQKSDTSAALRACLAKLSPAHREIIDLVYYHEKSVEEVGEIVGIPESTVKTR 167
|
.
gi 499399008 207 L 207
Cdd:PRK12515 168 M 168
|
|
| PRK12519 |
PRK12519 |
RNA polymerase sigma factor; Provisional |
37-210 |
1.96e-19 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237125 [Multi-domain] Cd Length: 194 Bit Score: 82.42 E-value: 1.96e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 37 GEPVAADVVFDEDSELLDRLAADDETAFRMLVERHIDRAYAIALRIVGNAADAEDVVQDSMLKIWSHRGrWQHGRAKFST 116
Cdd:PRK12519 4 GDSAPTSLSSRSDAELFSALKAGQSAALGVLYDRHAGLVYGLALKILGNSQEAEDLTQEIFLSLWRKSS-YDPKRGSLSS 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 117 WLYRVISNRCID-LR-RKPRTENVDTVPEVADGRPDASRVIER---NELNGMLEEAMQRLPEQQRIAVILSYHEDMSNGE 191
Cdd:PRK12519 83 YLLTLTRSRAIDrLRsRRSRQRLLERWQQELLGEASEDTPLEQaslAERSQRVQTALAQLPESQRQVLELAYYEGLSQSE 162
|
170
....*....|....*....
gi 499399008 192 IAEVMDSTVAAVESLLKRG 210
Cdd:PRK12519 163 IAKRLGIPLGTVKARARQG 181
|
|
| Sigma70_r2 |
pfam04542 |
Sigma-70 region 2; Region 2 of sigma-70 is the most conserved region of the entire protein. ... |
67-132 |
2.18e-18 |
|
Sigma-70 region 2; Region 2 of sigma-70 is the most conserved region of the entire protein. All members of this class of sigma-factor contain region 2. The high conservation is due to region 2 containing both the -10 promoter recognition helix and the primary core RNA polymerase binding determinant. The core binding helix, interacts with the clamp domain of the largest polymerase subunit, beta prime. The aromatic residues of the recognition helix, found at the C-terminus of this domain are though to mediate strand separation, thereby allowing transcription initiation.
Pssm-ID: 427998 [Multi-domain] Cd Length: 71 Bit Score: 76.09 E-value: 2.18e-18
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 499399008 67 LVERHIDRAYAIALRIVGNAADAEDVVQDSMLKIWSHRGRWQHGRA-KFSTWLYRVISNRCIDLRRK 132
Cdd:pfam04542 1 LVERYLPLVYSLARRYLGDGADAEDLVQEGFLGLWRAIERFDPERGvSFSTWLYTIIRNAIIDYLRK 67
|
|
| algU |
PRK11923 |
RNA polymerase sigma factor AlgU; Provisional |
47-209 |
3.12e-18 |
|
RNA polymerase sigma factor AlgU; Provisional
Pssm-ID: 171347 [Multi-domain] Cd Length: 193 Bit Score: 79.46 E-value: 3.12e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 47 DEDSELLDRLAADDETAFRMLVERHIDRAYAIALRIVGNAADAEDVVQDSMLKIWSHRGRWQhGRAKFSTWLYRVI---- 122
Cdd:PRK11923 5 EEDQQLVERVQRGDKRAFDLLVLKYQHKILGLIVRFVHDTAEAQDVAQEAFIKAYRALGNFR-GDSAFYTWLYRIAinta 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 123 SNRCIDLRRKPRTENVDTV-PEVADGR------PDASRVIERNELNGMLEEAMQRLPEQQRIAVILSYHEDMSNGEIAEV 195
Cdd:PRK11923 84 KNHLVSRGRRPPDSDVSSEdAEFYDGDhalkdiESPERALLRDEIEGTVHRTIQQLPEDLRTALTLREFDGLSYEDIASV 163
|
170
....*....|....
gi 499399008 196 MDSTVAAVESLLKR 209
Cdd:PRK11923 164 MQCPVGTVRSRIFR 177
|
|
| Sig70_famx3 |
TIGR02954 |
RNA polymerase sigma-70 factor, TIGR02954 family; This group of sigma factors are members of ... |
49-210 |
5.40e-18 |
|
RNA polymerase sigma-70 factor, TIGR02954 family; This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is found in certain Bacillus and Clostridium species.
Pssm-ID: 213752 [Multi-domain] Cd Length: 169 Bit Score: 78.21 E-value: 5.40e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 49 DSELLDRLAADDETAFRMLVERHIDRAYAIALRIVGNAADAEDVVQDSMLKIWSHRGRWQHGRAkFSTWLYRVISNRCID 128
Cdd:TIGR02954 3 DEELVKKAKRGNKPAFESLIKKHKEKLYKTAFIYVKNEHDALDVIQETVYKAYLSIDKLKHPKY-FNTWLTRILINECID 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 129 LRRKPRtenvDTVPEvadGRPDASRVIE-----RNELNgmLEEAMQRLPEQQRIAVILSYHEDMSNGEIAEVMDSTVAAV 203
Cdd:TIGR02954 82 LLKKKK----KVIPF---DPNTSIEKGEcethaDSRLD--LYKAIDTLNDKYQTAIILRYYHDLTIKEIAEVMNKPEGTV 152
|
....*..
gi 499399008 204 ESLLKRG 210
Cdd:TIGR02954 153 KTYLHRA 159
|
|
| Sig70_famx2 |
TIGR02952 |
RNA polymerase sigma-70 factor, TIGR02952 family; This group of sigma factors are members of ... |
52-209 |
6.93e-18 |
|
RNA polymerase sigma-70 factor, TIGR02952 family; This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is found in a limited number of Gram-positive bacterial lineages.
Pssm-ID: 131997 [Multi-domain] Cd Length: 170 Bit Score: 77.92 E-value: 6.93e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 52 LLDRLAADDETAFRMLVERHIDRAYA-IALRiVGNAADAEDVVQDSMLKIWSHRGRWQHGRAKFSTWLYRVISNRCID-- 128
Cdd:TIGR02952 1 LLERAQDREEDAFARIYETYSDRVYRyIYYR-VGCKYTAEDLTSEVFERVLRKIDSFKEQKNSFEAWLFTIARNVVNDyf 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 129 --LRRKPRTeNVDTVPEVADGRPDASRVIERNELNGMLEEAMQRLPEQQRIAVILSYHEDMSNGEIAEVMDSTVAAVESL 206
Cdd:TIGR02952 80 rgSKRHPLF-SLDVFKELLSNEPNPEEAILKEEANEKLLKALKILTPKQQHVIALRFGQNLPIAEVARILGKTEGAVKIL 158
|
...
gi 499399008 207 LKR 209
Cdd:TIGR02952 159 QFR 161
|
|
| SigE-fam_strep |
TIGR02983 |
RNA polymerase sigma-70 factor, sigma-E family; This group of similar sigma-70 factors ... |
57-210 |
2.09e-17 |
|
RNA polymerase sigma-70 factor, sigma-E family; This group of similar sigma-70 factors includes the sigE factor from Streptomyces coelicolor. The family appears to include a paralagous expansion in the Streptomycetes lineage, while related Actinomycetales have at most two representatives.
Pssm-ID: 132028 [Multi-domain] Cd Length: 162 Bit Score: 76.27 E-value: 2.09e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 57 AADDETAFRMLVERHIDRAYAIALRIVGNAADAEDVVQDSMLKIWshrGRWQHGRAKFST--WLYRVISNRCIDL--RRK 132
Cdd:TIGR02983 1 RSATEEEFTAFVAARYPRLLRTAYLLTGDPHEAEDLVQEALVRTY---VRWDRIRDPDAPdaYVRRVLVNLARSRwrRRR 77
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 499399008 133 PRTENVDTVPEVADGRPDAsrvieRNELNGMLEEAMQRLPEQQRIAVILSYHEDMSNGEIAEVMDSTVAAVESLLKRG 210
Cdd:TIGR02983 78 LLELPTRELPDAAAPDPAP-----DVALRAALARALRRLPARQRAVVVLRYYEDLSEAQVAEALGISVGTVKSRLSRA 150
|
|
| PRK09647 |
PRK09647 |
RNA polymerase sigma factor SigE; Reviewed |
67-210 |
2.66e-16 |
|
RNA polymerase sigma factor SigE; Reviewed
Pssm-ID: 236606 [Multi-domain] Cd Length: 203 Bit Score: 74.44 E-value: 2.66e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 67 LVERHIDRAYAIALRIVGNAADAEDVVQDSMLKIWSHRGRWQHGraKFSTWLYRVISNRCIDLRRKPRTENVDTVPEVAD 146
Cdd:PRK09647 33 LVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSLQNYQPG--TFEGWLHRITTNLFLDMVRRRARIRMEALPEDYD 110
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 499399008 147 ----GRPDASRVIERNELNGMLEEAMQRLPEQQRIAVILSYHEDMSNGEIAEVMDSTVAAVESLLKRG 210
Cdd:PRK09647 111 rvpgDEPNPEQIYHDARLDPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIAATLGVKLGTVRSRIHRG 178
|
|
| PRK12514 |
PRK12514 |
RNA polymerase sigma factor; Provisional |
47-209 |
4.91e-16 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 105710 [Multi-domain] Cd Length: 179 Bit Score: 73.32 E-value: 4.91e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 47 DEDSELLDRLAADDETAFRMLVERHIDRAYAIALRIVGNAADAEDVVQDSMLKIWSHRGRWQHGRAKFSTWLYRVISNRC 126
Cdd:PRK12514 4 DDIEKLIVRVSLGDRDAFSSLYDATSAKLFGICLRVLKDRSEAEEALQDVYVKIWTKADRFAVSGLSPMTWLITIARNHA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 127 ID-LR-RKPRTENVDTVPEVADGRPDA-SRVIERNElNGMLEEAMQRLPEQQRIAVILSYHEDMSNGEIAEVMDSTVAAV 203
Cdd:PRK12514 84 IDrLRaRKAVAVDIDEAHDLADPSPGPeAEVIAGDE-GQRIDACLEELEKDRAAAVRRAYLEGLSYKELAERHDVPLNTM 162
|
....*.
gi 499399008 204 ESLLKR 209
Cdd:PRK12514 163 RTWLRR 168
|
|
| SigZ |
TIGR02959 |
RNA polymerase sigma factor, SigZ family; This family of RNA polymerase sigma factors is a ... |
83-213 |
3.53e-15 |
|
RNA polymerase sigma factor, SigZ family; This family of RNA polymerase sigma factors is a member of the Sigma-70 subfamily (TIGR02937). One of these is designated as SigZ in B. subtilis (Swiss_Prot: SIGZ_BACSU). Interestingly, this group has a very sporatic distribution, B. subtilis, for instance, being the only sequenced strain of Bacilli with a member. Dechloromonas aromatica RCB appears to have two of these sigma factors. A member appears on a plasmid found in Photobacterium profundum SS9 and Vibrio fischeri ES114 (where a second one is chromosomally encoded).
Pssm-ID: 132004 [Multi-domain] Cd Length: 170 Bit Score: 70.47 E-value: 3.53e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 83 VGNAADAEDVVQDSMLKIWSHRGRWQHGrAKFSTWLYRVISNRCIDLRRKPRTENVDTVPEVAdgrPDASRVIE-RNELN 161
Cdd:TIGR02959 16 VSDASDVEDLLQEVFIKIHRNLPSLKDG-QKIQSWLYQIARNTIIDFYRSKSRSVELPESLLA---ADSAREETfVKELS 91
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 499399008 162 GMLEEAMQRLPEQQRIAVILSYHEDMSNGEIAEVMDSTVAAVESLLKRGRQQ 213
Cdd:TIGR02959 92 QCIPPMIKELPDEYREAIRLTELEGLSQQEIAEKLGLSLSGAKSRVQRGRKK 143
|
|
| PRK09640 |
PRK09640 |
RNA polymerase sigma factor SigX; Reviewed |
49-209 |
4.32e-15 |
|
RNA polymerase sigma factor SigX; Reviewed
Pssm-ID: 236603 [Multi-domain] Cd Length: 188 Bit Score: 70.74 E-value: 4.32e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 49 DSELLDRLAAD---DETAFRMLVERHIDRAYAIALRIVGNAADAEDVVQDSMLKIWSHRGRWQhGRAKFSTWLYRVISNR 125
Cdd:PRK09640 10 DEELVARVHVElfhVTRAYEELMRRYQRTLFNVCARYLGNDRDADDVCQEVMLKVLYGLKNFE-GKSKFKTWLYSITYNE 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 126 CIDLRRKPRTENVDTVPEVADGRPDAS-RVIERNELNGMLEEAMQRLPEQQRIAVILSYHEDMSNGEIAEVMDSTVAAVE 204
Cdd:PRK09640 89 CITQYRKERRKRRLMDALSLDPLEEASeEKAPKPEERGGLDRWLVHVNPIDREILVLRFVAELEFQEIADIMHMGLSATK 168
|
....*
gi 499399008 205 SLLKR 209
Cdd:PRK09640 169 MRYKR 173
|
|
| PRK12518 |
PRK12518 |
RNA polymerase sigma factor; Provisional |
52-207 |
6.02e-15 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237124 [Multi-domain] Cd Length: 175 Bit Score: 70.13 E-value: 6.02e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 52 LLDRLAADDETAFRMLVERHIDRAYAIALRIVGNAAdAEDVVQDSMLKIWSHRGRWQHgRAKFSTWLYRVISNRCIDLRR 131
Cdd:PRK12518 1 LILRCQRGDRQSFRQLYRRYQQKVRSTLYQLCGREL-LDDLVQEVFLRVWKGLPKLRN-PAYFSTWLYRITWNVATDARR 78
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 499399008 132 ---KPRTENVDTVPEVADGRPDASRVIERNELNGMLEEAMQRLPEQQRIAVILSYHEDMSNGEIAEVMDSTVAAVESLL 207
Cdd:PRK12518 79 qfaQRPSRIQDDSLNDQPSRPSDTPDLMQLHYQDLVQQGLQTLSLEHRAVLVLHDLEDLPQKEIAEILNIPVGTVKSRL 157
|
|
| PRK09645 |
PRK09645 |
ECF RNA polymerase sigma factor SigL; |
57-197 |
6.46e-15 |
|
ECF RNA polymerase sigma factor SigL;
Pssm-ID: 236605 [Multi-domain] Cd Length: 173 Bit Score: 70.11 E-value: 6.46e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 57 AADDETAFRMLVERHIDRAYAIALRIVGNAADAEDVVQDSMLKIWSHRGRWQHGRAKFSTWLYRVISNRCIDLRRKPRTE 136
Cdd:PRK09645 4 ATAEAALMRALYDEHAAPLWRYALRLTGDRARAEDVVQETLLRAWQHPEVLADTGRSARAWLFTVARNLVIDERRSARAR 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 499399008 137 NVDTVPEV-ADGRPDASRVIERNELNGMLEEAMQRLPEQQRIAVILSYHEDMSNGEIAEVMD 197
Cdd:PRK09645 84 PVEGGDDVlGVPEQSAPDEVDRALDRLLVADALAQLSPEHRAVLVRSYYRGWSTAQIAADLG 145
|
|
| PRK12534 |
PRK12534 |
RNA polymerase sigma factor; Provisional |
47-210 |
7.85e-15 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183576 [Multi-domain] Cd Length: 187 Bit Score: 70.08 E-value: 7.85e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 47 DEDSELLDRLAADDETAFRMLVERHIDRAYAIALRIVGNAADAEDVVQDSMLKIWSHRGRWQHGRAKFSTWLYRVISNRC 126
Cdd:PRK12534 10 DETGRLLTATAGGDRHAFEALYRQTSPKLFGVCLRMIPQRAEAEEVLQDVFTLIWHKAGQFDPSRARGLTWLAMIARNKA 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 127 ID-LR-RKPRTENV--DTVPEV-ADGRPDASRViERNELNGMLEEAMQRLPEQQRIAVILSYHEDMSNGEIAEVMDSTVA 201
Cdd:PRK12534 90 IDhLRaNAPQRRNValDDAGELrAADASPLERT-ERASTRRRIDHCLAELEPPRSELIRTAFFEGITYEELAARTDTPIG 168
|
....*....
gi 499399008 202 AVESLLKRG 210
Cdd:PRK12534 169 TVKSWIRRG 177
|
|
| PRK12537 |
PRK12537 |
RNA polymerase sigma factor; Provisional |
46-210 |
9.79e-14 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 171568 [Multi-domain] Cd Length: 182 Bit Score: 67.11 E-value: 9.79e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 46 FDEDSELLdRLAADDETAFRMLVERHIDRAYAIALRIVGNAADAEDVVQDSMLKIWSHRGRWQHGRAKFSTWLYRVISNR 125
Cdd:PRK12537 8 FDYEACLL-ACARGDRRALQALYQQESARLLGVARRIVRDRALAEDIVHDAFIKIWTGAASFDPARGSARGWIYSVTRHL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 126 CIDLRRKPRTENV--DTVPEVADGRPDASRVIERNELNGMLEEAMQRLPEQQRIAVILSYHEDMSNGEIAEVMDSTVAAV 203
Cdd:PRK12537 87 ALNVLRDTRREVVldDDAEETAQTLHEIIDDFDLWANSGKIHRCLEQLEPARRNCILHAYVDGCSHAEIAQRLGAPLGTV 166
|
....*..
gi 499399008 204 ESLLKRG 210
Cdd:PRK12537 167 KAWIKRS 173
|
|
| PRK09415 |
PRK09415 |
RNA polymerase factor sigma C; Reviewed |
83-212 |
1.69e-13 |
|
RNA polymerase factor sigma C; Reviewed
Pssm-ID: 181835 [Multi-domain] Cd Length: 179 Bit Score: 66.31 E-value: 1.69e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 83 VGNAADAEDVVQDSMLKIWSHRGRWQhGRAKFSTWLYRVISNRCIDLRRKPRTENVDTVPEVADGRPDASR-----VIER 157
Cdd:PRK09415 37 VKNKEVAEDLTQEIFVKCYKSLHTYK-GKSSLKTWLYRIAINHCKDYLKSWHNKKVIVTEDIFTYMESQKEsveeeVIQN 115
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 499399008 158 NELNGMLEEAMQrLPEQQRIAVILSYHEDMSNGEIAEVMDSTVAAVESLLKRGRQ 212
Cdd:PRK09415 116 AEDERLASAVMS-LPIKYREVIYLFYYEELSIKEIAEVTGVNENTVKTRLKKAKE 169
|
|
| PRK09637 |
PRK09637 |
RNA polymerase sigma factor SigZ; Provisional |
83-213 |
2.48e-13 |
|
RNA polymerase sigma factor SigZ; Provisional
Pssm-ID: 236601 [Multi-domain] Cd Length: 181 Bit Score: 65.78 E-value: 2.48e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 83 VGNAADAEDVVQDSMLKIWSHRGRWQHGrAKFSTWLYRVISNRCIDLRRKPRTENVDTVPEVADGRPDASRVieRNELNG 162
Cdd:PRK09637 22 VSNEADVDDLLQEVLIKTHSNLHSLKDG-SSIKSWLYQIANNTIIDFYRKKNRSEELPDDLLFEDEEREENA--KKELAP 98
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 499399008 163 MLEEAMQRLPEQQRIAVILSYHEDMSNGEIAEVMDSTVAAVESLLKRGRQQ 213
Cdd:PRK09637 99 CLRPFIDALPEKYAEALRLTELEGLSQKEIAEKLGLSLSGAKSRVQRGRVK 149
|
|
| PRK12531 |
PRK12531 |
RNA polymerase sigma factor; Provisional |
48-208 |
2.50e-13 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 105726 [Multi-domain] Cd Length: 194 Bit Score: 66.11 E-value: 2.50e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 48 EDSELLDRLAADDETAFRMLVERHIDRAYAIALRIVGNAADAEDVVQDSMLKIWSHRGRWQHGRAKFSTWLYRVISNRCI 127
Cdd:PRK12531 13 EWLECMEKVKSRDKQAFALVFSYYAPKLKQFAMKHVGNEQVAMEMVQETMSTVWQKAHLFDGQKSALSTWIYTIIRNLCF 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 128 DLRRKPRTENV-----DTVPEvaDGRPdASRVIERNELNGMLEEA----MQRLPEQQRIAVILSYHEDMSNGEIAEVMDS 198
Cdd:PRK12531 93 DLLRKQKGKDLhihadDIWPS--DYYP-PDLVDHYSPEQDMLKEQvmkfLDRLPKAQRDVLQAVYLEELPHQQVAEMFDI 169
|
170
....*....|
gi 499399008 199 TVAAVESLLK 208
Cdd:PRK12531 170 PLGTVKSRLR 179
|
|
| PRK12522 |
PRK12522 |
RNA polymerase sigma factor; Provisional |
61-210 |
2.13e-12 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183571 [Multi-domain] Cd Length: 173 Bit Score: 63.35 E-value: 2.13e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 61 ETAFRMLVERHIDRAYAIALRIVGNAADAEDVVQDSMLKIWS--HRGRWQHgraKFSTWLYRVISNRCID-LRRKPRTEN 137
Cdd:PRK12522 2 EEKVEELIDIYKQQIYSLCYKLAKTKEDAEDIFQETWIKVFSsrHQLSYVE---NYKKWITTICVRTFYDfYRKKKRWKD 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 138 V--DTVPEVADGR---PDASRVIE---RNELNGMLEEAMQRLPEQQRIAVILSYHEDMSNGEIAEVMDSTVAAVESLLKR 209
Cdd:PRK12522 79 RilDLFHKEDGGEiefADDVNISEefiQKVEAEMIREVIQLLNEKYKTVLVLYYYEQYSYKEMSEILNIPIGTVKYRLNY 158
|
.
gi 499399008 210 G 210
Cdd:PRK12522 159 A 159
|
|
| SigM_subfam |
TIGR02950 |
RNA polymerase sigma factor, SigM family; This family of RNA polymerase sigma factors is a ... |
76-214 |
1.94e-11 |
|
RNA polymerase sigma factor, SigM family; This family of RNA polymerase sigma factors is a member of the Sigma-70 subfamily (TIGR02937) and is restricted to certain lineages of the order Bacillales. This family encompasses at least two distinct sigma factors as two proteins are found in each of B. anthracis, B. subtilis subsp. subtilis str. 168, and B. lichiniformis (although these are not apparently the same two in each). One of these is designated as SigM in B. subtilis (Swiss_Prot:
Pssm-ID: 274361 [Multi-domain] Cd Length: 154 Bit Score: 60.16 E-value: 1.94e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 76 YAIALRIVGNAADAEDVVQDSMLKIWSHRGRWQHgrAKFSTWLYRVISNRCIDLRRKPRTENVDTVPEVADGRPDASRVI 155
Cdd:TIGR02950 9 FRYLYRLTKDKHLAEDLLQETFLKAYIHLHSFKD--SSIKPWLFRIARNAFIDWYRKDKKIQTIDDDAIGDLEQHPVESP 86
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 499399008 156 ERNELNGMLEEA----MQRLPEQQRIAVILSYHEDMSNGEIAEVMDSTVAAVESLLKRGRQQL 214
Cdd:TIGR02950 87 EHHLLIKIEQEEithhLSRLPENYRTVLILREFKEFSYKEIAELLNLSLAKVKSNLFRARKEL 149
|
|
| PRK12546 |
PRK12546 |
RNA polymerase sigma factor; Provisional |
74-210 |
3.60e-11 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 139055 [Multi-domain] Cd Length: 188 Bit Score: 60.24 E-value: 3.60e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 74 RAYAIALriVGNAADAEDVVQDSMLKIWSHRGRWQHGrAKFSTWLYRVISNRCIDLRRKPRTENVDTVPEVADG---RPD 150
Cdd:PRK12546 21 RAFAISL--TRNVAVADDLVQDTIVKAWTNFDKFQEG-TNLRAWLFTILRNTFYSDRRKHKREVPDPEGVHAASlavKPA 97
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 151 ASRVIERNELNgmleEAMQRLPEQQRIAVILSYHEDMSNGEIAEVMDSTVAAVESLLKRG 210
Cdd:PRK12546 98 HDGRLAMSDFR----AAFAQLPDEQREALILVGASGFSYEEAAEMCGVAVGTVKSRANRA 153
|
|
| PRK09047 |
PRK09047 |
RNA polymerase factor sigma-70; Validated |
83-197 |
3.91e-11 |
|
RNA polymerase factor sigma-70; Validated
Pssm-ID: 236367 [Multi-domain] Cd Length: 161 Bit Score: 59.60 E-value: 3.91e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 83 VGNAADAEDVVQDSMLKIWSHRGrwQHGRAKFSTWLYRVISNRCIDLRRKPRTEN--------------------VDTVP 142
Cdd:PRK09047 1 VRDDDAALDIVQDAMIKLAEKYG--DRPAAEWPPLFQRILQNRIHDWFRRQKVRNtwvslfssfsdddddddfdpLETLD 78
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 499399008 143 EVADGRPDASRVIERNELNGMLEEAMQRLPEQQRIAVILSYHEDMSNGEIAEVMD 197
Cdd:PRK09047 79 SADEGAESPADKLERAQVLQLIEEAIQKLPARQREAFLLRYWEDMDVAETAAAMG 133
|
|
| PRK12543 |
PRK12543 |
RNA polymerase sigma factor; Provisional |
60-210 |
6.70e-11 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183582 [Multi-domain] Cd Length: 179 Bit Score: 59.36 E-value: 6.70e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 60 DETAFRMLVERHIDRAYAIALRIVGNAADAEDVVQDSMLKIWSHRGRWQHGRAkFSTWLYRVISNRCIDLRRK------- 132
Cdd:PRK12543 5 DQEAFSEIYDVTIQEVYKTVHFLVEDKQDVDDVVNEIYIQLWESLRKYDSNRP-FRFWLIGLVIKQIHSWRRKrwrrfri 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 133 -------PRTENVDTVPEVADgrpdasrvierNELNGMLEEAMQRLPEQQRIAVILSYHEDMSNGEIAEVMDSTVAAVES 205
Cdd:PRK12543 84 fekaeeqRKPVSIDFSEDVLS-----------KESNQELIELIHKLPYKLRQVIILRYLHDYSQEEIAQLLQIPIGTVKS 152
|
....*
gi 499399008 206 LLKRG 210
Cdd:PRK12543 153 RIHAA 157
|
|
| PRK12533 |
PRK12533 |
RNA polymerase sigma factor; Provisional |
57-214 |
9.24e-11 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237129 [Multi-domain] Cd Length: 216 Bit Score: 59.36 E-value: 9.24e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 57 AADDETAFRMLVERHIDRAYAIALRIVGNAADAEDVVQDSMLKIWSHRGRWQHGRAKfsTWLYRVISNRCID--LRRKPR 134
Cdd:PRK12533 13 AAARGERFRQLVLPHLDAAYNLARWLCGNASDADDVVQEACMRALRFFDSFRGDNAR--PWLLAIVRHTWYSewRRRANA 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 135 TENV--------DTVPEVADGRPDASRVIERNELNGMLEEAMQRLPEQQRIAVILSYHEDMSNGEIAEVMDSTVAAVESL 206
Cdd:PRK12533 91 HEVAapdtlddaDSLDDWQPAGEDPLALLLRAEDVRLVNAALAKLPVEYREVLVLRELEDMSYREIAAIADVPVGTVMSR 170
|
....*...
gi 499399008 207 LKRGRQQL 214
Cdd:PRK12533 171 LARARRRL 178
|
|
| PRK12511 |
PRK12511 |
RNA polymerase sigma factor; Provisional |
74-210 |
2.14e-10 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237123 [Multi-domain] Cd Length: 182 Bit Score: 57.87 E-value: 2.14e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 74 RAYAIALriVGNAADAEDVVQDSMLKIWSHRGRWQHGrAKFSTWLYRVISNRCIDLRRKPRTENV--DTVPEVADGRPDA 151
Cdd:PRK12511 18 RRYARSL--TRDSAEAEDLVHDALVRALERRASFRSG-GNLRTWLMSILHNAFIDELRRRRVEARraDELAVLADASLPA 94
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 499399008 152 SRviERNELNGMLEEAMQRLPEQQRIAVILSYHEDMSNGEIAEVMDSTVAAVESLLKRG 210
Cdd:PRK12511 95 AQ--EHAVRLAQIRDAFFDLPEEQRAALHLVAIEGLSYQEAAAVLGIPIGTLMSRIGRA 151
|
|
| Sigma70_r4_2 |
pfam08281 |
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 ... |
163-210 |
2.31e-10 |
|
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif.
Pssm-ID: 400535 [Multi-domain] Cd Length: 54 Bit Score: 54.38 E-value: 2.31e-10
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 499399008 163 MLEEAMQRLPEQQRIAVILSYHEDMSNGEIAEVMDSTVAAVESLLKRG 210
Cdd:pfam08281 3 ALLRALEELPPRQREVFLLRYLEGLSYAEIAELLGISEGTVKSRLSRA 50
|
|
| PRK09636 |
PRK09636 |
RNA polymerase sigma factor SigJ; Provisional |
69-209 |
4.80e-10 |
|
RNA polymerase sigma factor SigJ; Provisional
Pssm-ID: 236600 [Multi-domain] Cd Length: 293 Bit Score: 58.01 E-value: 4.80e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 69 ERHIDRAYAIALRIVGNAADAEDVVQDSMLkiwshrgRWQhgRAKFST------WLYRVISNRCID-LR--RKPRTENV- 138
Cdd:PRK09636 11 EPLRPHLLSVAYRMLGSVADAEDIVQEAWL-------RWN--NADRAQirdpraWLTRVVTRLCLDrLRsaRHRRETYVg 81
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 499399008 139 ----DTVPEVADGRPDASRVIERNELNGMLeeAMQRLPEQQRIAVILsyHE--DMSNGEIAEVMDSTVAAVESLLKR 209
Cdd:PRK09636 82 pwlpEPVVEELDDPLEAVVAAEDLSLALML--ALERLSPLERAAFLL--HDvfGVPFDEIASTLGRSPAACRQLASR 154
|
|
| PRK12526 |
PRK12526 |
RNA polymerase sigma factor; Provisional |
48-208 |
2.35e-09 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237127 [Multi-domain] Cd Length: 206 Bit Score: 55.19 E-value: 2.35e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 48 EDSELLDRLAAD-DETAFRMLVERHIDRAYAIALRIVGNAADAEDVVQDSMLKIWSHRGRWQHGRAKFSTWLYRVISNRC 126
Cdd:PRK12526 23 ELSQWLILVAISrDKQAFTHLFQFFAPKIKRFGIKQLGNEAQANELVQETMSNVWRKAHLYNGDKGAATTWVYTVMRNAA 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 127 IDLRRKPRTENVDTVPEvaDGRPDASRVIERN----ELNGMLEEA-----MQRLPEQQRIAVILSYHEDMSNGEIAEVMD 197
Cdd:PRK12526 103 FDMLRKIKAKKEQNLGD--DIWPIEQALAESQseseEFSDHLMDKqilsyIEKLPEAQQTVVKGVYFQELSQEQLAQQLN 180
|
170
....*....|.
gi 499399008 198 STVAAVESLLK 208
Cdd:PRK12526 181 VPLGTVKSRLR 191
|
|
| Sig-70_gvs1 |
TIGR02989 |
RNA polymerase sigma-70 factor, Rhodopirellula/Verrucomicrobium family; This group of sigma ... |
63-209 |
6.43e-09 |
|
RNA polymerase sigma-70 factor, Rhodopirellula/Verrucomicrobium family; This group of sigma factors are members of the sigma-70 family (TIGR02937) and are abundantly found in the species Rhodopirellula baltica (11), and Verrucomicrobium spinosum (16) and to a lesser extent in Gemmata obscuriglobus (2).
Pssm-ID: 274379 [Multi-domain] Cd Length: 159 Bit Score: 53.09 E-value: 6.43e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 63 AFRMLVERHIDRAYAIALRIVGNAADAEDVVQDSMLKIWSHRGRWQHGrAKFSTWLYRVISNRCIDLRRKPRTENVDTVP 142
Cdd:TIGR02989 2 AFVRLLTRHERALRAFVRSLVADRDDVDDVLQETFVVAWRKFDQFDPG-TNFVAWARGIARNKVLNYRRKLGRDRLVFDD 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 143 EVADGRPDASRVIERNELNGM---LEEAMQRLPEQQRIAVILSYHEDMSNGEIAEVMDSTVAAVESLLKR 209
Cdd:TIGR02989 81 DLLEALAAEAEPTEAERLSDDrqaLEGCLEKLPERQRELLDLRYQRGQKATALAEQTGRTVNAVYKALQR 150
|
|
| CAS_III-E_sigma |
NF041236 |
type III-E CRISPR-associated RpoE-like sigma factor; |
86-197 |
7.83e-09 |
|
type III-E CRISPR-associated RpoE-like sigma factor;
Pssm-ID: 469138 [Multi-domain] Cd Length: 192 Bit Score: 53.54 E-value: 7.83e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 86 AADAEDVVQDSMLKIWSHRGRWQhGR--AKFSTWLYRVISNRCIDLRRKPRTENVDTVPEV---ADGRPDASRVIERNEL 160
Cdd:NF041236 47 PEDREDILSETVEAVQRGIGKFE-GRrgAKFSTWVWRIFRNKRVDYFRKKYKKKEYSLPLEgaeDDQEEEPEDDIEEMFA 125
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 499399008 161 NGMLEEAM-QRLPEQQR--IAVILSYHEDMSNG----EIAEVMD 197
Cdd:NF041236 126 AEDIIECLkKKVDDGETgcIRLLLDLYRWFKEGltqkEMAESYG 169
|
|
| PRK09646 |
PRK09646 |
ECF RNA polymerase sigma factor SigK; |
51-210 |
3.10e-08 |
|
ECF RNA polymerase sigma factor SigK;
Pssm-ID: 182015 [Multi-domain] Cd Length: 194 Bit Score: 51.98 E-value: 3.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 51 ELLDRLAADDETAFRMLVERHIDRAYAIALRIVGNAADAEDVVQDSMLKIWSHRGRWQHGRAKFSTWLYRVISNRCIDLR 130
Cdd:PRK09646 19 ALLRRVARGDQDAFAELYDRTSSRVYGLVRRVLRDPGYSEETTQEVYLEVWRTASRFDPARGSALAWLLTLAHRRAVDRV 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 131 RKPRTEN--------------VDTVPEVADGRPDASRViernelngmlEEAMQRLPEQQRIAVILSYHEDMSNGEIAEVM 196
Cdd:PRK09646 99 RSEQAASqrevrygarnvdpaFDQVAEEVEARLERERV----------RDCLDALTDTQRESVTLAYYGGLTYREVAERL 168
|
170
....*....|....
gi 499399008 197 DSTVAAVESLLKRG 210
Cdd:PRK09646 169 AVPLGTVKTRMRDG 182
|
|
| PRK12512 |
PRK12512 |
RNA polymerase sigma factor; Provisional |
47-210 |
3.60e-08 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 171551 [Multi-domain] Cd Length: 184 Bit Score: 51.62 E-value: 3.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 47 DEDSELLDRLAADDETAFRMLVERHIDRAYAIALRIVGNAA----DAEDVVQDSMLKIWSHRGRWQHGrAKFSTWLYRVI 122
Cdd:PRK12512 7 DEWTDLMRSANAGDAAAYRRLLKAVTPVLRAAARRGLARAGqpadQAEDIVQEILLAVHLKRHTWDPG-APFAPWLFAIA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 123 SNRCID-LRRKPRTENVDtVPEVADGRP--DASRVIERNELNGMLEeamqRLPEQQRIAVILSYHEDMSNGEIAEVMDST 199
Cdd:PRK12512 86 RNKLIDaLRRRGRRVFVD-IDDFAETLPaePATETLPAGDVGRHLE----TLPPRQRDVVQSISVEGASIKETAAKLSMS 160
|
170
....*....|.
gi 499399008 200 VAAVESLLKRG 210
Cdd:PRK12512 161 EGAVRVALHRG 171
|
|
| Sigma70_r4 |
cd06171 |
Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in ... |
163-210 |
7.07e-08 |
|
Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplasmic stress and pathogenesis. Ec sigmaE SR4 also contacts the -35 element, but recognizes a different consensus (a 7-base-pair GGAACTT). Plant SFs recognize sigma70 type promoters and direct transcription of the major plastid RNA polymerase, plastid-encoded RNA polymerase (PEP).
Pssm-ID: 100119 [Multi-domain] Cd Length: 55 Bit Score: 47.87 E-value: 7.07e-08
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 499399008 163 MLEEAMQRLPEQQRIAVILSYHEDMSNGEIAEVMDSTVAAVESLLKRG 210
Cdd:cd06171 3 RLEEALDKLPEREREVILLRFGEGLSYEEIAEILGISRSTVRQRLHRA 50
|
|
| PRK12527 |
PRK12527 |
RNA polymerase sigma factor; Reviewed |
83-204 |
8.35e-08 |
|
RNA polymerase sigma factor; Reviewed
Pssm-ID: 171560 [Multi-domain] Cd Length: 159 Bit Score: 50.16 E-value: 8.35e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 83 VGNAADAEDVVQDSMLKIW--SHRGRWQHGRAkfstWLYRVISNRCIDLRRKPRTENVDTVpEVADGR-----PDASRVI 155
Cdd:PRK12527 16 LGNRQAAEDVAHDAYLRVLerSSSAQIEHPRA----FLYRTALNLVVDRHRRHRVRQAEPL-EVLDEEerlhsPSPQTRL 90
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 499399008 156 ERNELNGMLEEAMQRLPEQQRIAVILSYHEDMSNGEIAEVMDSTVAAVE 204
Cdd:PRK12527 91 DLGQRLALLQRALAELPPACRDSFLLRKLEGLSHQQIAEHLGISRSLVE 139
|
|
| PRK12516 |
PRK12516 |
RNA polymerase sigma factor; Provisional |
74-209 |
1.06e-07 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183568 [Multi-domain] Cd Length: 187 Bit Score: 50.35 E-value: 1.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 74 RAYAIALriVGNAADAEDVVQDSMLKIWSHRGRWQHGrAKFSTWLYRVISNRCIDLRRKPRTENVDTvpevaDGRPDASR 153
Cdd:PRK12516 24 RAFAVSL--IGRHDRADDLVQDTIMKAWAKQDHFEVG-TNMKAWLFTILRNEFYSQMRKRGREVQDT-----DGMFTEQL 95
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 154 VIERNELNGM----LEEAMQRLPEQQRIAVILSYHEDMSNGEIAEVMDSTVAAVESLLKR 209
Cdd:PRK12516 96 AVHPSQYGTLdlqdFRAALDQLPDDQREAIILVGASGFAYEEAAEICGCAVGTIKSRVNR 155
|
|
| PRK12547 |
PRK12547 |
RNA polymerase sigma factor; Provisional |
74-209 |
1.41e-07 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 139056 [Multi-domain] Cd Length: 164 Bit Score: 49.49 E-value: 1.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 74 RAYAIALriVGNAADAEDVVQDSMLKIWSHRGRWQHGrAKFSTWLYRVISNRCIDLRRKPRTENVDTvpevaDGRPdASR 153
Cdd:PRK12547 20 RAFAVSL--SSKHDKAEDLVQDTLMKAWAKQDSFEMG-TNLKAWLFTILRNEFYSQMRKRGREVQDS-----DGVF-TAR 90
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 499399008 154 VIERNELNGMLE-----EAMQRLPEQQRIAVILSYHEDMSNGEIAEVMDSTVAAVESLLKR 209
Cdd:PRK12547 91 VAVHPAQYGSLDlqdfkKALNLLSADQREAIILIGASGFSYEDAAAICGCAVGTIKSRVSR 151
|
|
| PRK09644 |
PRK09644 |
RNA polymerase sigma factor SigM; Provisional |
89-214 |
6.98e-07 |
|
RNA polymerase sigma factor SigM; Provisional
Pssm-ID: 170033 [Multi-domain] Cd Length: 165 Bit Score: 47.57 E-value: 6.98e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 89 AEDVVQDSMLKIWSHRGRWQHGRAKfsTWLYRVISNRCIDLRRKPRTENVDTVPEVADGRPDASR-VIERNELNGMLEEA 167
Cdd:PRK09644 28 AEDLLQETFYRAYIYLEDYDNQKVK--PWLFKVAYHTFIDFVRKEKKVSFVGTDEIEAIQAESTEeYVVAKNSYEKLIQI 105
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 499399008 168 MQRLPEQQRIAVILSYHEDMSNGEIAEVMDSTVAAVESLLKRGRQQL 214
Cdd:PRK09644 106 IHTLPVIEAQAILLCDVHELTYEEAASVLDLKLNTYKSHLFRGRKRL 152
|
|
| PRK06288 |
PRK06288 |
RNA polymerase sigma factor WhiG; Reviewed |
138-199 |
1.09e-06 |
|
RNA polymerase sigma factor WhiG; Reviewed
Pssm-ID: 235770 [Multi-domain] Cd Length: 268 Bit Score: 48.14 E-value: 1.09e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 499399008 138 VDTVPEVADGRPDAsrVIERNELNGMLEEAMQRLPEQQRIAVILSYHEDMSNGEIAEVMDST 199
Cdd:PRK06288 182 MDTLESPAALNPDE--IAEREEIKRVIVEAIKTLPEREKKVLILYYYEDLTLKEIGKVLGVT 241
|
|
| PRK12545 |
PRK12545 |
RNA polymerase factor sigma-70; |
57-147 |
1.16e-06 |
|
RNA polymerase factor sigma-70;
Pssm-ID: 183584 [Multi-domain] Cd Length: 201 Bit Score: 47.64 E-value: 1.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 57 AADDETAFRMLVERHIDRAYAIALRivgNAADAEDVVQDSMLKIWSHRGRWQhGRAKFSTWLYRVISNRCID-LRRKPRT 135
Cdd:PRK12545 6 SAHDDPAYLAQLRHDLLRFARLQLR---DADAAEDAVQEALAAAWSQAGRFA-GQSAHKTWVFGILRNKLIDtLRARQRT 81
|
90
....*....|..
gi 499399008 136 ENVDTVPEVADG 147
Cdd:PRK12545 82 VNLSALDAELDG 93
|
|
| PRK09639 |
PRK09639 |
RNA polymerase sigma factor SigX; Provisional |
59-210 |
1.69e-06 |
|
RNA polymerase sigma factor SigX; Provisional
Pssm-ID: 236602 [Multi-domain] Cd Length: 166 Bit Score: 46.48 E-value: 1.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 59 DDETaFRMLVERHIDRAYAIALRIVGNAADAEDVVQDSMLKIWshRGRWqHGRAKFSTWLYRVISNRCIDL-----RRKP 133
Cdd:PRK09639 1 SDET-FEDLFEQYYPDVVQQIFYIVKDRTQAEDLAQEVFLRLY--RSDF-KGIENEKGWLIKSARNVAYNYlrsekRRRA 76
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 499399008 134 RTENVDTVPEVaDGRPDASRVIERNELNGMLEEAMQRLPEQQRiAVILSYHEDMSNGEIAEVMDSTVAAVESLLKRG 210
Cdd:PRK09639 77 RILGEFQWQEV-DNEPSPEEIWIRKEEITKVQEVLAKMTERDR-TVLLLRFSGYSYKEIAEALGIKESSVGTTLARA 151
|
|
| PRK13919 |
PRK13919 |
putative RNA polymerase sigma E protein; Provisional |
49-209 |
2.32e-06 |
|
putative RNA polymerase sigma E protein; Provisional
Pssm-ID: 184395 [Multi-domain] Cd Length: 186 Bit Score: 46.45 E-value: 2.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 49 DSELLDRLAADDETAFRMLVERHIDRAYAIALRIVGNAADAEDVVQDSMLKIWSHRGRWQHGRAKFSTWLYRVISNRCID 128
Cdd:PRK13919 10 DEALLALVARGEEEALRALFRRYAGAFLALARRMGLDGAAAEDVVQEVFIRVWKKAKEFDPRRGSARAWLLALAHHAAVD 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 129 -LRR---KPRTENVDTVPEVADGRPDASRVIERNELNGMLEEAMQRL-PEQQRIAVILsYHEDMSNGEIAEVMDSTVAAV 203
Cdd:PRK13919 90 hVRRraaRPQPLEPDEREPEAFDLPGPGLDEEGHLDRTRLGRALKALsPEERRVIEVL-YYQGYTHREAAQLLGLPLGTL 168
|
....*.
gi 499399008 204 ESLLKR 209
Cdd:PRK13919 169 KTRARR 174
|
|
| PRK09642 |
PRK09642 |
RNA polymerase sigma factor; |
76-210 |
4.12e-06 |
|
RNA polymerase sigma factor;
Pssm-ID: 170031 [Multi-domain] Cd Length: 160 Bit Score: 45.48 E-value: 4.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 76 YAIALRIVGNAADAEDVVQDSMLKIWSHRGRWQHGRAKfsTWLYRVISNRCIDLRRKPRTENVD-TVPEVADGRPDASRV 154
Cdd:PRK09642 9 FQVIFSILRHEEDAKDVTQEVFVKIHASLPNYQFRGLK--TWMARIATNHAIDYKRKKARENEElSLCKETEENIKSSHN 86
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 155 IE----RNELNGMLEEAMQRLPEQQRIAVILSYHEDMSNGEIAEVMDSTVAAVESLLKRG 210
Cdd:PRK09642 87 IEdlllTKEQKLLIAQKLRELPENYRDVVLAHYLEEKSYQEIALQEKIEVKTVEMKLYRA 146
|
|
| PRK09648 |
PRK09648 |
RNA polymerase sigma factor ShbA; |
48-203 |
4.20e-06 |
|
RNA polymerase sigma factor ShbA;
Pssm-ID: 236607 [Multi-domain] Cd Length: 189 Bit Score: 45.73 E-value: 4.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 48 EDSELLDRL----AADDETAFRMLVE--RHIDRAYAIAL--RIVGNAADAEDVVQDSMLKIWSHRGRWQHGRAKFSTWLY 119
Cdd:PRK09648 6 DTGEELDALvaeaVAGDRRALREVLEiiRPLVVRYCRARlgGVERPGLSADDVAQEVCLAVITALPRYRDQGRPFLAFVY 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 120 RVISNRCIDLRR---KPRTENVDTVPEVADGRPDASRVIERNELNGMLEEAMQRLPEQQRIAVILSYHEDMSNGEIAEVM 196
Cdd:PRK09648 86 GIAAHKVADAHRaagRDKAVPTEEVPERPSDDAGPEERALRSESSNRMRELLDTLPEKQREILILRVVVGLSAEETAEAV 165
|
....*..
gi 499399008 197 DSTVAAV 203
Cdd:PRK09648 166 GSTPGAV 172
|
|
| PRK12540 |
PRK12540 |
RNA polymerase sigma factor; Provisional |
74-209 |
4.71e-06 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183579 [Multi-domain] Cd Length: 182 Bit Score: 45.73 E-value: 4.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 74 RAYAIALRivGNAADAEDVVQDSMLKIWSHRGRWQHGrAKFSTWLYRVISNRCIDLRRKPRTENVDTVPEVA---DGRPD 150
Cdd:PRK12540 19 RAFAISLS--GNGDRADDLVQETLLRALANIDSFQPG-SNLPAWLFTILRNLFRSDYRKRRREVEDADGSYAktlKSQPG 95
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 499399008 151 ASRVIERNELNGMLEeamqRLPEQQRIAVILSYHEDMSNGEIAEVMDSTVAAVESLLKR 209
Cdd:PRK12540 96 QNAHLEFEEFRAALD----KLPQDQREALILVGASGFSYEDAAAICGCAVGTIKSRVNR 150
|
|
| PRK12532 |
PRK12532 |
RNA polymerase sigma factor; Provisional |
80-209 |
5.99e-06 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 171564 [Multi-domain] Cd Length: 195 Bit Score: 45.31 E-value: 5.99e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 80 LRIVGNAADAEDVVQDSMLKIWSHRGRWQhGRAKFSTWLYRVISNRCID-LRRKPRT---------ENVDTVPEV----- 144
Cdd:PRK12532 24 LQLPDHPDLAEDLVQETLLSAYSAGDSFQ-GRALVNSWLFAILKNKIIDaLRQIGRQrkvftllddELLDEAFEShfsqn 102
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 499399008 145 ----ADGRP----DASRVIERNELNGMLEEAMQRLPEQqrIAVILSYHE--DMSNGEIAEVMDSTVAAVESLLKR 209
Cdd:PRK12532 103 ghwtPEGQPqhwnTPEKSLNNNEFQKILQSCLYNLPEN--TARVFTLKEilGFSSDEIQQMCGISTSNYHTIMHR 175
|
|
| sigI |
PRK09635 |
RNA polymerase sigma factor SigI; Provisional |
74-209 |
7.77e-06 |
|
RNA polymerase sigma factor SigI; Provisional
Pssm-ID: 182008 [Multi-domain] Cd Length: 290 Bit Score: 45.73 E-value: 7.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 74 RAYAI--ALRIVGNAADAEDVVQDSMLKIW-SHRGRWQHGRAkfstWLYRVISNRCIDLRRKPRT--ENVDTVPEVADGR 148
Cdd:PRK09635 15 RAYLVdlAFRMVGDIGVAEDMVQEAFSRLLrAPVGDIDDERG----WLIVVTSRLCLDHIKSASTrrERPQDIAAWHDGD 90
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 499399008 149 PD------ASRVIERNELNGMLEEAMQRLPEQQRIAVILSYHEDMSNGEIAEVMDSTVAAVESLLKR 209
Cdd:PRK09635 91 ASvssvdpADRVTLDDEVRLALLIMLERLGPAERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHR 157
|
|
| PRK06811 |
PRK06811 |
RNA polymerase factor sigma-70; Validated |
45-211 |
1.91e-05 |
|
RNA polymerase factor sigma-70; Validated
Pssm-ID: 180707 [Multi-domain] Cd Length: 189 Bit Score: 43.77 E-value: 1.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 45 VFDEDSELLDRLAADDETAFRMLVERHIDRAYAIALRIVGNAA---DAEDVVQDSMLKIWSHRGRWQHGRAKFSTWLYRV 121
Cdd:PRK06811 1 MKINEDNFIKELKKKNEKALEFIVDTYGNLVKKIVHKVLGTVNysqLIEECVNDIFLSIWNNIDKFDEEKGSFKKWIAAI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 122 ISNRCIDLRRKPRTE-NVDTVPEVADGRPDA--SRVIERNELNGMLEeAMQRLPEQQRIAVILSYHEDMSNGEIAEVMDS 198
Cdd:PRK06811 81 SKYKAIDYKRKLTKNnEIDSIDEFILISEESieNEIILKENKEEILK-LINDLEKLDREIFIRRYLLGEKIEEIAKKLGL 159
|
170
....*....|...
gi 499399008 199 TVAAVESLLKRGR 211
Cdd:PRK06811 160 TRSAIDNRLSRGR 172
|
|
| FliA |
COG1191 |
DNA-directed RNA polymerase specialized sigma subunit [Transcription]; DNA-directed RNA ... |
149-209 |
2.09e-05 |
|
DNA-directed RNA polymerase specialized sigma subunit [Transcription]; DNA-directed RNA polymerase specialized sigma subunit is part of the Pathway/BioSystem: RNA polymerase
Pssm-ID: 440804 [Multi-domain] Cd Length: 236 Bit Score: 44.04 E-value: 2.09e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 499399008 149 PDASRVIERNELNGMLEEAMQRLPEQQRIAVILSYHEDMSNGEIAEVMDSTVAAVESLLKR 209
Cdd:COG1191 165 GDPEEELEHEELREALAEAIEQLPERERLVLSLYYFEELTLKEIAEVLGVSESRVSRLHKK 225
|
|
| PRK07037 |
PRK07037 |
extracytoplasmic-function sigma-70 factor; Validated |
78-178 |
4.55e-05 |
|
extracytoplasmic-function sigma-70 factor; Validated
Pssm-ID: 180803 [Multi-domain] Cd Length: 163 Bit Score: 42.36 E-value: 4.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 78 IALRIVGNAADAEDVVQDSMLKIWSHRGRwQHGRAKFStWLYRVISNRCIDLRRKPRTENVDTVPE-------VADGRPD 150
Cdd:PRK07037 14 IAARIVGCRSRAEDVVQDAFVKLVEAPNQ-DAVKQPVA-YLFRIVRNLAIDHYRRQALENKYHGDEedgldvpSPEASPE 91
|
90 100
....*....|....*....|....*...
gi 499399008 151 ASrVIERNELNgMLEEAMQRLPEQQRIA 178
Cdd:PRK07037 92 AA-LINRDTLR-HVADALSELPARTRYA 117
|
|
| PRK12530 |
PRK12530 |
RNA polymerase sigma factor; Provisional |
85-209 |
6.06e-05 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237128 [Multi-domain] Cd Length: 189 Bit Score: 42.45 E-value: 6.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 85 NAADAEDVVQDSMLKIWSHRGRWQhGRAKFSTWLYRVISNRCIDL-RRKPRTENVDTVPEVAD--------GRPDASRvI 155
Cdd:PRK12530 30 DADLAEDVVQEALVSAYKNADSFK-GQSALKTWIFAILKNKIIDLiRYRKRFVNESELIEEDSpnsffdekGHWKPEY-Y 107
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499399008 156 ERNELNG------------MLEEAMQRLPEQQRIAVILSYHEDMSNGEIAEVMDSTVAAVESLLKR 209
Cdd:PRK12530 108 EPSEWQEventvykeefwlIFEACLNHLPAQQARVFMMREYLELSSEQICQECDISTSNLHVLLYR 173
|
|
| Sigma70_r4 |
pfam04545 |
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 ... |
167-210 |
1.11e-04 |
|
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.
Pssm-ID: 461347 [Multi-domain] Cd Length: 50 Bit Score: 38.56 E-value: 1.11e-04
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 499399008 167 AMQRLPEQQRIAVILSYHEDMSNGEIAEVMDSTVAAVESLLKRG 210
Cdd:pfam04545 1 ALASLPPRERQVLVLRYGEGLTLEEIGERLGISRERVRQIEKRA 44
|
|
| PRK12541 |
PRK12541 |
RNA polymerase sigma factor; Provisional |
63-212 |
1.25e-04 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183580 [Multi-domain] Cd Length: 161 Bit Score: 41.08 E-value: 1.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 63 AFRMLVERHIDRAYAIALRIVGNAADAEDVVQDSMLKIWSHRGRWQHGRAKfsTWLYRVISNRCIDLRRKPRTENVDTVP 142
Cdd:PRK12541 6 SLEEIYSEHMQDLFRYLLSLTGDSHFAEDLMQETFYRMLVHIDYYKGEEIR--PWLFTIAYNAFIDWYRKEKKYKTTTIE 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 499399008 143 EVA-DGRPDAS-RVIERNELNGMLEEAMQRLPEQQRIAVILSYHeDMSNGEIAEVMDSTVAAVESLLKRGRQ 212
Cdd:PRK12541 84 EFHlPNVPSTEhEYFIKHEIASWLDSLSSLPLERRNVLLLRDYY-GFSYKEIAEMTGLSLAKVKIELHRGRK 154
|
|
| PRK12536 |
PRK12536 |
RNA polymerase sigma factor; Provisional |
52-210 |
1.33e-04 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237131 [Multi-domain] Cd Length: 181 Bit Score: 41.19 E-value: 1.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 52 LLDRLAADDETAFRMLVE---RHIdRAYaIALRIVGNAADAEDVVQDSMLKIWSHRGRWQHGrAKFSTWLYRVISNRCID 128
Cdd:PRK12536 11 LLLRGLAGDAAAYRQFLSelaAHL-RGF-LRRRLPQLPDEVEDLVQEILLAVHNARHTYRAD-QPLTAWVHAIARYKLMD 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 129 -LRRKPRTENV-DTVPEVAD--GRPDASRVIERNELNGMLEEamqrLPEQQRIAVILSYHEDMSNGEIAEVMDSTVAAVE 204
Cdd:PRK12536 88 fLRSRARREALhDPLDDESElfATSDDEAAEARRDLGKLLEQ----LPDRQRLPIVHVKLEGLSVAETAQLTGLSESAVK 163
|
....*.
gi 499399008 205 SLLKRG 210
Cdd:PRK12536 164 VGIHRG 169
|
|
| PRK12544 |
PRK12544 |
RNA polymerase factor sigma-70; |
83-209 |
1.53e-04 |
|
RNA polymerase factor sigma-70;
Pssm-ID: 183583 [Multi-domain] Cd Length: 206 Bit Score: 41.33 E-value: 1.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 83 VGNAADAEDVVQDSMLKIWSHRGRWQhGRAKFSTWLYRVISNRCID-LRRKPRTENVDTVPEVADGRPDASRVIERN--- 158
Cdd:PRK12544 39 LSDLHLAEDAVQEALIGALKNADSFA-GRAAFKTWVFAILKNKIIDlLRQKKRHVSASSLLRDEEEEEDFEELFDESghw 117
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 159 ----------ELNGMLEEA---------MQRLPEQQRIAVILSYHEDMSNGEIAEVMDSTVAAVESLLKR 209
Cdd:PRK12544 118 qkderpqawgNPEESLEQEqfwrifeacLDGLPAKYARVFMMREFIELETNEICHAVDLSVSNLNVLLYR 187
|
|
| fliA |
PRK06986 |
flagellar biosynthesis sigma factor; Validated |
150-209 |
4.95e-04 |
|
flagellar biosynthesis sigma factor; Validated
Pssm-ID: 235901 [Multi-domain] Cd Length: 236 Bit Score: 40.22 E-value: 4.95e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 150 DASRVIERNELNGMLEEAMQRLPEQQRIAVILSYHEDMSNGEIAEVMDSTVAAVESLLKR 209
Cdd:PRK06986 164 DPLQQLEDEELREALVEAIESLPEREQLVLSLYYQEELNLKEIGAVLGVSESRVSQIHSQ 223
|
|
| PRK12539 |
PRK12539 |
RNA polymerase sigma factor SigF; |
60-210 |
1.10e-03 |
|
RNA polymerase sigma factor SigF;
Pssm-ID: 237132 [Multi-domain] Cd Length: 184 Bit Score: 38.56 E-value: 1.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 60 DETAFRMLVER---HIDRAYAIALRIVGNAAD-AEDVVQDSMLKIWSHRGRWQhGRAKFSTWLYRVISNRCID-LRRKPR 134
Cdd:PRK12539 19 DAAAHRALLERlsgHLRAYYKGKLARIGRGAEeAEDLVQEALMAIHTRRHTYD-PEQPLTPWVYAIARYKLIDhLRRTRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 135 T------ENVDTVPEvADGRPDASRVIErnelngmLEEAMQRLPEQQRIAVILSYHEDMSNGEIAEVMDSTVAAVESLLK 208
Cdd:PRK12539 98 SladvpiDDADELVA-HDDHAAVESTLD-------LGRLLARLPEKMRLAIQAVKLEGLSVAEAATRSGMSESAVKVSVH 169
|
..
gi 499399008 209 RG 210
Cdd:PRK12539 170 RG 171
|
|
| PRK12542 |
PRK12542 |
RNA polymerase sigma factor; Provisional |
55-210 |
4.07e-03 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183581 [Multi-domain] Cd Length: 185 Bit Score: 36.95 E-value: 4.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 55 RLAADDETAFRMLVERHIDRAYAIALRIVGNAADAEDVVQDSMLKIWSHRGRWQH-GRAKFSTWLYRVISNRCIDLRRKP 133
Cdd:PRK12542 2 KVTNNDYEKMEELYELYEQKVYYVAYSILNNIQQAEDAVQETFITLYKNLEKLHSlNTQELKRYILRVAKNKAIDSYRKN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499399008 134 R----------TENVDTVPEVADGRpdASRVIERNELNGMLEEamqrLPEQQRIAVILSYHEDMSNGEIAEVMDSTVAAV 203
Cdd:PRK12542 82 KrhetfleeyeRESIEAVDENIEEW--EKRKMSEVQIDTLLKE----LNESNRQVFKYKVFYNLTYQEISSVMGITEANV 155
|
....*..
gi 499399008 204 ESLLKRG 210
Cdd:PRK12542 156 RKQFERA 162
|
|
| PRK09191 |
PRK09191 |
two-component response regulator; Provisional |
165-208 |
9.17e-03 |
|
two-component response regulator; Provisional
Pssm-ID: 236402 [Multi-domain] Cd Length: 261 Bit Score: 36.36 E-value: 9.17e-03
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 499399008 165 EEAMQRLPEQQRIAVILSYHEDMSNGEIAEVMDSTVAAVESLLK 208
Cdd:PRK09191 83 ERRLAGLTPLPRQAFLLTALEGFSVEEAAEILGVDPAEAEALLD 126
|
|
| |
