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Conserved domains on  [gi|498913438|ref|WP_010848611|]
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hypothetical protein [Xenorhabdus nematophila]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF6516 super family cl45499
Family of unknown function (DUF6516); This presumed domain is functionally uncharacterized. ...
 22-78 8.75e-03

Family of unknown function (DUF6516); This presumed domain is functionally uncharacterized. This domain family is found in archaea, and is approximately 60 amino acids in length.


The actual alignment was detected with superfamily member pfam20126:

Pssm-ID: 466294  Cd Length: 85  Bit Score: 32.02  E-value: 8.75e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 498913438  22 TRVFGIDNAHaisipkkgKYKGRIVYDHMHRNSYDKGVPYEFTSPYQLIEDFFAKID 78
Cdd:pfam20126 37 ELIFRYDNEP--------HHKGNLKTFPHHKHGGGKEEVSEFPGLEEVLEEIEAEVE 85
 
Name Accession Description Interval E-value
DUF6516 pfam20126
Family of unknown function (DUF6516); This presumed domain is functionally uncharacterized. ...
 22-78 8.75e-03

Family of unknown function (DUF6516); This presumed domain is functionally uncharacterized. This domain family is found in archaea, and is approximately 60 amino acids in length.


Pssm-ID: 466294  Cd Length: 85  Bit Score: 32.02  E-value: 8.75e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 498913438  22 TRVFGIDNAHaisipkkgKYKGRIVYDHMHRNSYDKGVPYEFTSPYQLIEDFFAKID 78
Cdd:pfam20126 37 ELIFRYDNEP--------HHKGNLKTFPHHKHGGGKEEVSEFPGLEEVLEEIEAEVE 85
 
Name Accession Description Interval E-value
DUF6516 pfam20126
Family of unknown function (DUF6516); This presumed domain is functionally uncharacterized. ...
 22-78 8.75e-03

Family of unknown function (DUF6516); This presumed domain is functionally uncharacterized. This domain family is found in archaea, and is approximately 60 amino acids in length.


Pssm-ID: 466294  Cd Length: 85  Bit Score: 32.02  E-value: 8.75e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 498913438  22 TRVFGIDNAHaisipkkgKYKGRIVYDHMHRNSYDKGVPYEFTSPYQLIEDFFAKID 78
Cdd:pfam20126 37 ELIFRYDNEP--------HHKGNLKTFPHHKHGGGKEEVSEFPGLEEVLEEIEAEVE 85
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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