NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|498491831|ref|WP_010792626|]
View 

MULTISPECIES: histone-like nucleoid-structuring protein, MvaT/MvaU family [Pseudomonas]

Protein Classification

DNA binding protein( domain architecture ID 11610841)

DNA-binding protein similar to the the DNA-binding domain of the bacterial xenogeneic silencer MvaT, a xenogeneic silencer which assists in distinguishing foreign from self DNA

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
MvaT_DBD cd16170
DNA-binding domain of the bacterial xenogeneic silencer MvaT; MvaT is a xenogeneic silencer ...
 78-119 9.21e-18

DNA-binding domain of the bacterial xenogeneic silencer MvaT; MvaT is a xenogeneic silencer conserved in Pseudomonas which assists in distinguishing foreign from self DNA. It prefers binding to flexible DNA segments with multiple TpA steps, and forms nucleoprotein filaments through cooperative polymerization.


:

Pssm-ID: 320084  Cd Length: 42  Bit Score: 70.47  E-value: 9.21e-18
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 498491831  78 RTLKRFKNPHTGEVVETKGGNHKTLKEWKEKWGADTVKGWAQ 119
Cdd:cd16170    1 REVKVYKNPHTGETVETKGGNHKTLKAWKAQYGAETVESWRQ 42
 
Name Accession Description Interval E-value
MvaT_DBD cd16170
DNA-binding domain of the bacterial xenogeneic silencer MvaT; MvaT is a xenogeneic silencer ...
 78-119 9.21e-18

DNA-binding domain of the bacterial xenogeneic silencer MvaT; MvaT is a xenogeneic silencer conserved in Pseudomonas which assists in distinguishing foreign from self DNA. It prefers binding to flexible DNA segments with multiple TpA steps, and forms nucleoprotein filaments through cooperative polymerization.


Pssm-ID: 320084  Cd Length: 42  Bit Score: 70.47  E-value: 9.21e-18
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 498491831  78 RTLKRFKNPHTGEVVETKGGNHKTLKEWKEKWGADTVKGWAQ 119
Cdd:cd16170    1 REVKVYKNPHTGETVETKGGNHKTLKAWKAQYGAETVESWRQ 42
 
Name Accession Description Interval E-value
MvaT_DBD cd16170
DNA-binding domain of the bacterial xenogeneic silencer MvaT; MvaT is a xenogeneic silencer ...
 78-119 9.21e-18

DNA-binding domain of the bacterial xenogeneic silencer MvaT; MvaT is a xenogeneic silencer conserved in Pseudomonas which assists in distinguishing foreign from self DNA. It prefers binding to flexible DNA segments with multiple TpA steps, and forms nucleoprotein filaments through cooperative polymerization.


Pssm-ID: 320084  Cd Length: 42  Bit Score: 70.47  E-value: 9.21e-18
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 498491831  78 RTLKRFKNPHTGEVVETKGGNHKTLKEWKEKWGADTVKGWAQ 119
Cdd:cd16170    1 REVKVYKNPHTGETVETKGGNHKTLKAWKAQYGAETVESWRQ 42
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH