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Conserved domains on  [gi|497906914|ref|WP_010221070|]
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MULTISPECIES: DUF1145 domain-containing protein [Pseudomonas]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1145 super family cl11481
Protein of unknown function (DUF1145); This family consists of several hypothetical bacterial ...
 4-60 1.51e-03

Protein of unknown function (DUF1145); This family consists of several hypothetical bacterial proteins of unknown function.


The actual alignment was detected with superfamily member pfam06611:

Pssm-ID: 472200  Cd Length: 58  Bit Score: 33.75  E-value: 1.51e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 497906914   4 LLGLAKALTVVFWWVVLVNLLIPLEHPFHLLINAAGAALLGLHLLEVLMFNGCLRTR 60
Cdd:pfam06611  2 LINLGKLLMLGFWGVLLFNLVHPFPGPLNIFLNIAGGFLVLMHGLQLLLFKAALKKR 58
 
Name Accession Description Interval E-value
DUF1145 pfam06611
Protein of unknown function (DUF1145); This family consists of several hypothetical bacterial ...
 4-60 1.51e-03

Protein of unknown function (DUF1145); This family consists of several hypothetical bacterial proteins of unknown function.


Pssm-ID: 429030  Cd Length: 58  Bit Score: 33.75  E-value: 1.51e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 497906914   4 LLGLAKALTVVFWWVVLVNLLIPLEHPFHLLINAAGAALLGLHLLEVLMFNGCLRTR 60
Cdd:pfam06611  2 LINLGKLLMLGFWGVLLFNLVHPFPGPLNIFLNIAGGFLVLMHGLQLLLFKAALKKR 58
 
Name Accession Description Interval E-value
DUF1145 pfam06611
Protein of unknown function (DUF1145); This family consists of several hypothetical bacterial ...
 4-60 1.51e-03

Protein of unknown function (DUF1145); This family consists of several hypothetical bacterial proteins of unknown function.


Pssm-ID: 429030  Cd Length: 58  Bit Score: 33.75  E-value: 1.51e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 497906914   4 LLGLAKALTVVFWWVVLVNLLIPLEHPFHLLINAAGAALLGLHLLEVLMFNGCLRTR 60
Cdd:pfam06611  2 LINLGKLLMLGFWGVLLFNLVHPFPGPLNIFLNIAGGFLVLMHGLQLLLFKAALKKR 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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