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Conserved domains on  [gi|497624073|ref|WP_009938257|]
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type Z 30S ribosomal protein S14 [Mycobacterium tuberculosis]

Protein Classification

30S ribosomal protein S14( domain architecture ID 10012995)

30S ribosomal protein S14 type Z is located in the peptidyl transferase center and involved in assembly of the 30S ribosome subunit

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rpsN PRK08061
type Z 30S ribosomal protein S14;
1-60 4.61e-32

type Z 30S ribosomal protein S14;


:

Pssm-ID: 181216  Cd Length: 61  Bit Score: 104.57  E-value: 4.61e-32
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 497624073  1 MAKKALVNKAAGKPRFAVRAYTRCSKCGRPRAVYRKFGLCRICLREMAHAGELPGVQKSS 60
Cdd:PRK08061  1 MAKKSLIAKAKRKPKFKVRAYTRCERCGRPHSVYRKFGLCRICFRELAYKGQIPGVKKAS 60
 
Name Accession Description Interval E-value
rpsN PRK08061
type Z 30S ribosomal protein S14;
1-60 4.61e-32

type Z 30S ribosomal protein S14;


Pssm-ID: 181216  Cd Length: 61  Bit Score: 104.57  E-value: 4.61e-32
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 497624073  1 MAKKALVNKAAGKPRFAVRAYTRCSKCGRPRAVYRKFGLCRICLREMAHAGELPGVQKSS 60
Cdd:PRK08061  1 MAKKSLIAKAKRKPKFKVRAYTRCERCGRPHSVYRKFGLCRICFRELAYKGQIPGVKKAS 60
RpsN COG0199
Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S14 ...
 1-60 9.35e-29

Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S14 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439969  Cd Length: 60  Bit Score: 96.23  E-value: 9.35e-29
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 497624073  1 MAKKALVNKAAgKPRFAVRAYTRCSKCGRPRAVYRKFGLCRICLREMAHAGELPGVQKSS 60
Cdd:COG0199   1 MAKKSMIARNK-KRPKPVRLRNRCELTGRPRGYYRKFGLCRICFRELAHRGEIPGVKKAS 59
Ribosomal_S14 pfam00253
Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 ...
 9-60 3.61e-22

Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 from eukaryotes.


Pssm-ID: 459734  Cd Length: 54  Bit Score: 79.37  E-value: 3.61e-22
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 497624073   9 KAAGKPRFA--VRAYTRCSKCGRPRAVYRKFGLCRICLREMAHAGELPGVQKSS 60
Cdd:pfam00253  1 KLQKLPRNSspTRIRNRCRLTGRPRGVIRKFGLCRICFRELALKGEIPGVKKAS 54
 
Name Accession Description Interval E-value
rpsN PRK08061
type Z 30S ribosomal protein S14;
1-60 4.61e-32

type Z 30S ribosomal protein S14;


Pssm-ID: 181216  Cd Length: 61  Bit Score: 104.57  E-value: 4.61e-32
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 497624073  1 MAKKALVNKAAGKPRFAVRAYTRCSKCGRPRAVYRKFGLCRICLREMAHAGELPGVQKSS 60
Cdd:PRK08061  1 MAKKSLIAKAKRKPKFKVRAYTRCERCGRPHSVYRKFGLCRICFRELAYKGQIPGVKKAS 60
RpsN COG0199
Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S14 ...
 1-60 9.35e-29

Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S14 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439969  Cd Length: 60  Bit Score: 96.23  E-value: 9.35e-29
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 497624073  1 MAKKALVNKAAgKPRFAVRAYTRCSKCGRPRAVYRKFGLCRICLREMAHAGELPGVQKSS 60
Cdd:COG0199   1 MAKKSMIARNK-KRPKPVRLRNRCELTGRPRGYYRKFGLCRICFRELAHRGEIPGVKKAS 59
Ribosomal_S14 pfam00253
Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 ...
 9-60 3.61e-22

Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 from eukaryotes.


Pssm-ID: 459734  Cd Length: 54  Bit Score: 79.37  E-value: 3.61e-22
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 497624073   9 KAAGKPRFA--VRAYTRCSKCGRPRAVYRKFGLCRICLREMAHAGELPGVQKSS 60
Cdd:pfam00253  1 KLQKLPRNSspTRIRNRCRLTGRPRGVIRKFGLCRICFRELALKGEIPGVKKAS 54
rpsN PRK08881
30S ribosomal protein S14; Reviewed
 17-60 1.45e-18

30S ribosomal protein S14; Reviewed


Pssm-ID: 181574  Cd Length: 101  Bit Score: 71.72  E-value: 1.45e-18
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 497624073  17 AVRAYTRCSKCGRPRAVYRKFGLCRICLREMAHAGELPGVQKSS 60
Cdd:PRK08881  57 PTRLRNRCELTGRPRGYYRKFGLSRIKLRELAHRGEIPGVVKAS 100
rps14 CHL00074
ribosomal protein S14
 14-60 1.65e-16

ribosomal protein S14


Pssm-ID: 214354  Cd Length: 100  Bit Score: 66.37  E-value: 1.65e-16
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 497624073  14 PR--FAVRAYTRCSKCGRPRAVYRKFGLCRICLREMAHAGELPGVQKSS 60
Cdd:CHL00074  51 PRnsAPTRLHNRCFLTGRPRGNYRDFGLSRHVLREMAHACLLPGVTKSS 99
rpsN PRK06911
30S ribosomal protein S14; Reviewed
 18-60 3.71e-12

30S ribosomal protein S14; Reviewed


Pssm-ID: 180742 [Multi-domain]  Cd Length: 100  Bit Score: 55.46  E-value: 3.71e-12
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 497624073  18 VRAYTRCSKCGRPRAVYRKFGLCRICLREMAHAGELPGVQKSS 60
Cdd:PRK06911  57 VRYVTRCKQCGRPHAVYRKFNLCRICLRQQLMVGNIPGGRKSS 99
rps14P PRK05766
30S ribosomal protein S14P; Reviewed
 23-49 1.60e-03

30S ribosomal protein S14P; Reviewed


Pssm-ID: 235598  Cd Length: 52  Bit Score: 32.56  E-value: 1.60e-03
                        10        20
                ....*....|....*....|....*....
gi 497624073 23 RCSKCGRPRAVYRKFG--LCRICLREMAH 49
Cdd:PRK05766 16 ECQRCGRKQGLIRKYGlyLCRQCFREVAP 44
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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