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Conserved domains on  [gi|497339937|ref|WP_009654150|]
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MULTISPECIES: RcnB family protein [Klebsiella]

Protein Classification

RcnB family protein( domain architecture ID 10009312)

RcnB family protein similar to Escherichia coli nickel/cobalt homeostasis protein RcnB that may act by modulating RcnA-mediated export of nickel and cobalt ions to avoid excess efflux

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
RcnB COG5455
Periplasmic regulator RcnB of Ni and Co efflux [Inorganic ion transport and metabolism];
1-151 5.53e-32

Periplasmic regulator RcnB of Ni and Co efflux [Inorganic ion transport and metabolism];


:

Pssm-ID: 444206 [Multi-domain]  Cd Length: 121  Bit Score: 110.58  E-value: 5.53e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497339937   1 MKKILSLAIILSCAL---TSVSWADGPGGNNRGqqqvwqqdagrggpdgnrqqgpqannHQGNGDNRG--PAHGDKGLQG 75
Cdd:COG5455    1 MKKKLIILALLAASLlaaASAAFAQPPGPDRRG--------------------------HDRRRDDRHddPGHRDKHRGA 54
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 497339937  76 NPHqerherdhfaWNGHDFRKGQPAPERYRGNDYRINDWNDRGLPAPPRGQHWSYIDGNYVLIAAATGIITSILIN 151
Cdd:COG5455   55 GPG----------EDYKRWRRGDRLPPEYRGRRYVVNDWRRYGLPAPPRGYHWVRVGGDYVLVAIATGIIVSIVLG 120
 
Name Accession Description Interval E-value
RcnB COG5455
Periplasmic regulator RcnB of Ni and Co efflux [Inorganic ion transport and metabolism];
1-151 5.53e-32

Periplasmic regulator RcnB of Ni and Co efflux [Inorganic ion transport and metabolism];


Pssm-ID: 444206 [Multi-domain]  Cd Length: 121  Bit Score: 110.58  E-value: 5.53e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497339937   1 MKKILSLAIILSCAL---TSVSWADGPGGNNRGqqqvwqqdagrggpdgnrqqgpqannHQGNGDNRG--PAHGDKGLQG 75
Cdd:COG5455    1 MKKKLIILALLAASLlaaASAAFAQPPGPDRRG--------------------------HDRRRDDRHddPGHRDKHRGA 54
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 497339937  76 NPHqerherdhfaWNGHDFRKGQPAPERYRGNDYRINDWNDRGLPAPPRGQHWSYIDGNYVLIAAATGIITSILIN 151
Cdd:COG5455   55 GPG----------EDYKRWRRGDRLPPEYRGRRYVVNDWRRYGLPAPPRGYHWVRVGGDYVLVAIATGIIVSIVLG 120
RcnB pfam11776
Nickel/cobalt transporter regulator; RcnB is a family of Proteobacteria proteins. RcnB is ...
97-147 8.71e-21

Nickel/cobalt transporter regulator; RcnB is a family of Proteobacteria proteins. RcnB is required for maintaining metal ion homeostasis, in conjunction with the efflux pump RcnA, family NicO, pfam03824.


Pssm-ID: 432066  Cd Length: 51  Bit Score: 79.92  E-value: 8.71e-21
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 497339937   97 GQPAPERYRGNDYRINDWNDRGLPAPPRGQHWSYIDGNYVLIAAATGIITS 147
Cdd:pfam11776   1 GDRLPPEYRGRRYVVDDYRRYHLPAPPRGYHWVRIGGDYVLVAIATGRIVD 51
PRK12678 PRK12678
transcription termination factor Rho; Provisional
21-124 9.83e-03

transcription termination factor Rho; Provisional


Pssm-ID: 237171 [Multi-domain]  Cd Length: 672  Bit Score: 35.26  E-value: 9.83e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497339937  21 ADGPGGNNRGQQQvwqQDAGRGGPDGNRQQGPQANN--HQGNGDNRGPAHGDKGLQGNPHQERHERDHFAWNGHDFRKGQ 98
Cdd:PRK12678 185 AERGERGRREERG---RDGDDRDRRDRREQGDRREErgRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGR 261
                         90       100
                 ....*....|....*....|....*.
gi 497339937  99 pAPERYRGNDYRINDWNDRGLPAPPR 124
Cdd:PRK12678 262 -RGRRFRDRDRRGRRGGDGGNEREPE 286
 
Name Accession Description Interval E-value
RcnB COG5455
Periplasmic regulator RcnB of Ni and Co efflux [Inorganic ion transport and metabolism];
1-151 5.53e-32

Periplasmic regulator RcnB of Ni and Co efflux [Inorganic ion transport and metabolism];


Pssm-ID: 444206 [Multi-domain]  Cd Length: 121  Bit Score: 110.58  E-value: 5.53e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497339937   1 MKKILSLAIILSCAL---TSVSWADGPGGNNRGqqqvwqqdagrggpdgnrqqgpqannHQGNGDNRG--PAHGDKGLQG 75
Cdd:COG5455    1 MKKKLIILALLAASLlaaASAAFAQPPGPDRRG--------------------------HDRRRDDRHddPGHRDKHRGA 54
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 497339937  76 NPHqerherdhfaWNGHDFRKGQPAPERYRGNDYRINDWNDRGLPAPPRGQHWSYIDGNYVLIAAATGIITSILIN 151
Cdd:COG5455   55 GPG----------EDYKRWRRGDRLPPEYRGRRYVVNDWRRYGLPAPPRGYHWVRVGGDYVLVAIATGIIVSIVLG 120
RcnB pfam11776
Nickel/cobalt transporter regulator; RcnB is a family of Proteobacteria proteins. RcnB is ...
97-147 8.71e-21

Nickel/cobalt transporter regulator; RcnB is a family of Proteobacteria proteins. RcnB is required for maintaining metal ion homeostasis, in conjunction with the efflux pump RcnA, family NicO, pfam03824.


Pssm-ID: 432066  Cd Length: 51  Bit Score: 79.92  E-value: 8.71e-21
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 497339937   97 GQPAPERYRGNDYRINDWNDRGLPAPPRGQHWSYIDGNYVLIAAATGIITS 147
Cdd:pfam11776   1 GDRLPPEYRGRRYVVDDYRRYHLPAPPRGYHWVRIGGDYVLVAIATGRIVD 51
PRK12678 PRK12678
transcription termination factor Rho; Provisional
21-124 9.83e-03

transcription termination factor Rho; Provisional


Pssm-ID: 237171 [Multi-domain]  Cd Length: 672  Bit Score: 35.26  E-value: 9.83e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497339937  21 ADGPGGNNRGQQQvwqQDAGRGGPDGNRQQGPQANN--HQGNGDNRGPAHGDKGLQGNPHQERHERDHFAWNGHDFRKGQ 98
Cdd:PRK12678 185 AERGERGRREERG---RDGDDRDRRDRREQGDRREErgRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGR 261
                         90       100
                 ....*....|....*....|....*.
gi 497339937  99 pAPERYRGNDYRINDWNDRGLPAPPR 124
Cdd:PRK12678 262 -RGRRFRDRDRRGRRGGDGGNEREPE 286
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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