|
Name |
Accession |
Description |
Interval |
E-value |
| TrmA |
COG2265 |
tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure ... |
11-453 |
1.19e-154 |
|
tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure and biogenesis]; tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 441866 [Multi-domain] Cd Length: 377 Bit Score: 443.46 E-value: 1.19e-154
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 11 QEIEADVIDITYEGNGVVKLDDFPIFVTNAVPGERVLVGVTKVASTYAFGRVIKRLVESPDRNNEIEANALLTGIAPLAH 90
Cdd:COG2265 1 EILELTIEDLAHGGDGVARHDGKVVFVPGALPGERVRVRVTKVKKSFARAKLVEVLEPSPDRVEPPCPHFGRCGGCQLQH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 91 LNYDAQLKHKQKQVADVFNKQHV--DVEIAPTMGMDNPWGYRNKAQIPTREINGLLTTGFYRRGSHRLVEIEDFLIQDPK 168
Cdd:COG2265 81 LSYEAQLELKQRVVREALERIGGlpEVEVEPIIGSPEPWGYRNRARLSVRRTDGRLRLGFYARGSHELVDIDECPLLDPA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 169 IDEAILVVRDILRKYHTeayneeiHKGTIRNIMVRRGyyshemmvvlvtrskklplaevivqdiraalpevksivqnvnq 248
Cdd:COG2265 161 LNALLPALRELLAELGA-------RRGELRHLVVRAG------------------------------------------- 190
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 249 ektnvimgeknnilwgKSTIKDQLLGKTFAIGPNSFYQVNPQMTERLYEMAAQKAELKSTDTVIDAYSGIGTISLAIADQ 328
Cdd:COG2265 191 ----------------RDYLTERLGGLTFRISPGSFFQVNPEQAEALYAAALEWLDLTGGERVLDLYCGVGTFALPLARR 254
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 329 VKQVIGVEIVAGAVDDAKRNADINNIKNVKFELGKAEEKMVEWQDAEvAPDVIFVDPPRKGLTEELIVAATGMAPERIVY 408
Cdd:COG2265 255 AKKVIGVEIVPEAVEDARENARLNGLKNVEFVAGDLEEVLPELLWGG-RPDVVVLDPPRAGAGPEVLEALAALGPRRIVY 333
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 497172810 409 ISCNPATLARDAVQIIENGYHIKgDVQPIDQFPQTTHVESITVFE 453
Cdd:COG2265 334 VSCNPATLARDLALLVEGGYRLE-KVQPVDMFPHTHHVESVALLE 377
|
|
| rumA |
TIGR00479 |
23S rRNA (uracil-5-)-methyltransferase RumA; This protein family was first proposed to be RNA ... |
20-447 |
5.77e-147 |
|
23S rRNA (uracil-5-)-methyltransferase RumA; This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 129571 [Multi-domain] Cd Length: 431 Bit Score: 425.77 E-value: 5.77e-147
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 20 ITYEGNGVVKLDDFPIFVTNAVPGERVLVGVTKVASTYAFGRVIKRLVESPDRNNEIEANALLTGIAPLAHLNYDAQLKH 99
Cdd:TIGR00479 1 LDHQGEGVARFNGKTVFVPGALPGEKAEVRVTEVKKQYARARVKKILEDSPERTTPPCPHFGQCGGCQLQHLSYELQLRS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 100 KQKQVADVFNK----QHVDVEIAPTMGmDNPWGYRNKAQIP-TREINGLLTTGFYRRGSHRLVEIEDFLIQDPKIDEAIL 174
Cdd:TIGR00479 81 KQQQVIALLERigkfVSEPIEDVPTIG-DDPWGYRNKARLSlGRSPSGQLQAGFYQKGSHDIVDVKQCPVQAPALNALLP 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 175 VVRDILRKYHTEAYNEEIHKGTIRNIMVRRGYYSHEMMVVLVTRSKKLPLAEVIVQDIRAALPEVKSIVQNVNQEKTNVI 254
Cdd:TIGR00479 160 KVRAILENFGASRYLEHKELGQARHGVLRIGRHTGELSSVDRTALERFPHKEELDLYLQPDSPDVKSICQNINPEKTNVI 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 255 MGEKNNILWGKSTIKDQLLGKTFAIGPNSFYQVNPQMTERLYEMAAQKAELKSTDTVIDAYSGIGTISLAIADQVKQVIG 334
Cdd:TIGR00479 240 FGEETEVIAGEMPIYDKSGDLSFTFSARDFIQVNSGQNEKLVDRALEWLELQGEERVLDAYCGMGTFTLPLAKQAKSVVG 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 335 VEIVAGAVDDAKRNADINNIKNVKFELGKAEEKMVEWQDAEVAPDVIFVDPPRKGLTEELIVAATGMAPERIVYISCNPA 414
Cdd:TIGR00479 320 VEGVPESVEKAQQNAELNGIANVTFYHGTLETVLPKQPWAGNGFDKVLLDPPRKGCAAGVLRTIIKLKPERIVYVSCNPA 399
|
410 420 430
....*....|....*....|....*....|...
gi 497172810 415 TLARDAVQIIENGYHIKgDVQPIDQFPQTTHVE 447
Cdd:TIGR00479 400 TLARDLEALCKAGYTIA-RVQPVDMFPHTGHVE 431
|
|
| rumA |
PRK13168 |
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD; |
1-454 |
6.12e-70 |
|
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD;
Pssm-ID: 237291 [Multi-domain] Cd Length: 443 Bit Score: 228.50 E-value: 6.12e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 1 MKRKAPVVKNQEIEADVIDITYEGNGVVKLDDFPIFVTNAVPGERVLVGVTKVASTYAFGRVIKRLVESPDRnneieana 80
Cdd:PRK13168 4 YSPKRRVTTRQIITVTIESLDHDGRGVARHNGKTVFIEGALPGERVEVQVTEDKKQYARAKVVRILKPSPER-------- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 81 lltgIAP------------LAHLNYDAQLKHKQKQVADVFNK-QHVDVEIAPTMGMDNPWGYRNKAQIPTR--EINGLLT 145
Cdd:PRK13168 76 ----VTPrcphfgvcggcqLQHLSIDAQIASKQRALEDLLKHlAGVEPEEVLPPIAGPPWGYRRRARLSVRyvPKKGQLL 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 146 TGFYRRGSHRLVEIEDFLIQDPKIDEAILVVRDILRKYHteayneeihkgtirniMVRRgyyshemmvvlvtrskkLPLA 225
Cdd:PRK13168 152 VGFREKNSSDIVDIDQCPVLVPPLSALLPPLRALLSSLS----------------AKRR-----------------LGHV 198
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 226 EVIVQDIRAALpeVKSIVQNVNQEKTNVIM--GEKNNI-LW--GKSTIKDQLLGK--------------TFAIGPNSFYQ 286
Cdd:PRK13168 199 ELAQGDNGTAL--VLRHLEPLSEADRAKLRafAEQHGLqLYlqPKGPDLVHLLGPadaqlsyylpefglRLAFSPRDFIQ 276
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 287 VNPQMTERLYEMAAQKAELKSTDTVIDAYSGIGTISLAIADQVKQVIGVEIVAGAVDDAKRNADINNIKNVKF---ELGK 363
Cdd:PRK13168 277 VNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFyhaNLEE 356
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 364 AEEKMvEWQDAEVapDVIFVDPPRKGlTEELIVAATGMAPERIVYISCNPATLARDAVQIIENGYHIKGdVQPIDQFPQT 443
Cdd:PRK13168 357 DFTDQ-PWALGGF--DKVLLDPPRAG-AAEVMQALAKLGPKRIVYVSCNPATLARDAGVLVEAGYRLKR-AGMLDMFPHT 431
|
490
....*....|.
gi 497172810 444 THVESITVFEK 454
Cdd:PRK13168 432 GHVESMALFER 442
|
|
| tRNA_U5-meth_tr |
pfam05958 |
tRNA (Uracil-5-)-methyltransferase; This family consists of (Uracil-5-)-methyltransferases EC: ... |
282-454 |
5.31e-22 |
|
tRNA (Uracil-5-)-methyltransferase; This family consists of (Uracil-5-)-methyltransferases EC:2.1.1.35 from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalyzed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity.
Pssm-ID: 428692 Cd Length: 357 Bit Score: 96.74 E-value: 5.31e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 282 NSFYQVNPQMTERLYEMAAQKAElKSTDTVIDAYSGIGTISLAIADQVKQVIGVEIVAGAVDDAKRNADINNIKNVKF-- 359
Cdd:pfam05958 177 NSFTQPNAAVNIKMLEWACDVTQ-GSKGDLLELYCGNGNFSLALARNFRKVLATEIAKPSVAAAQYNIAANNIDNVQIir 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 360 ----ELGKAEEKMVEW---QDAEV---APDVIFVDPPRKGLTEELIVAATGMapERIVYISCNPATLARDAVQIIENgyH 429
Cdd:pfam05958 256 msaeEFTQAMNGVREFnrlKGIDLksyNCSTIFVDPPRAGLDPETLKLVQAY--PRILYISCNPETLCANLEQLSKT--H 331
|
170 180
....*....|....*....|....*
gi 497172810 430 IKGDVQPIDQFPQTTHVESITVFEK 454
Cdd:pfam05958 332 RVERFALFDQFPYTHHMECGVLLEK 356
|
|
| AdoMet_MTases |
cd02440 |
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ... |
310-386 |
1.62e-07 |
|
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Pssm-ID: 100107 [Multi-domain] Cd Length: 107 Bit Score: 49.35 E-value: 1.62e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 497172810 310 TVIDAYSGIGTISLAIADQ-VKQVIGVEIVAGAVDDAKRNADINNIKNVKFELGKAEEkmvEWQDAEVAPDVIFVDPP 386
Cdd:cd02440 1 RVLDLGCGTGALALALASGpGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEE---LPPEADESFDVIISDPP 75
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| TrmA |
COG2265 |
tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure ... |
11-453 |
1.19e-154 |
|
tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure and biogenesis]; tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 441866 [Multi-domain] Cd Length: 377 Bit Score: 443.46 E-value: 1.19e-154
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 11 QEIEADVIDITYEGNGVVKLDDFPIFVTNAVPGERVLVGVTKVASTYAFGRVIKRLVESPDRNNEIEANALLTGIAPLAH 90
Cdd:COG2265 1 EILELTIEDLAHGGDGVARHDGKVVFVPGALPGERVRVRVTKVKKSFARAKLVEVLEPSPDRVEPPCPHFGRCGGCQLQH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 91 LNYDAQLKHKQKQVADVFNKQHV--DVEIAPTMGMDNPWGYRNKAQIPTREINGLLTTGFYRRGSHRLVEIEDFLIQDPK 168
Cdd:COG2265 81 LSYEAQLELKQRVVREALERIGGlpEVEVEPIIGSPEPWGYRNRARLSVRRTDGRLRLGFYARGSHELVDIDECPLLDPA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 169 IDEAILVVRDILRKYHTeayneeiHKGTIRNIMVRRGyyshemmvvlvtrskklplaevivqdiraalpevksivqnvnq 248
Cdd:COG2265 161 LNALLPALRELLAELGA-------RRGELRHLVVRAG------------------------------------------- 190
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 249 ektnvimgeknnilwgKSTIKDQLLGKTFAIGPNSFYQVNPQMTERLYEMAAQKAELKSTDTVIDAYSGIGTISLAIADQ 328
Cdd:COG2265 191 ----------------RDYLTERLGGLTFRISPGSFFQVNPEQAEALYAAALEWLDLTGGERVLDLYCGVGTFALPLARR 254
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 329 VKQVIGVEIVAGAVDDAKRNADINNIKNVKFELGKAEEKMVEWQDAEvAPDVIFVDPPRKGLTEELIVAATGMAPERIVY 408
Cdd:COG2265 255 AKKVIGVEIVPEAVEDARENARLNGLKNVEFVAGDLEEVLPELLWGG-RPDVVVLDPPRAGAGPEVLEALAALGPRRIVY 333
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 497172810 409 ISCNPATLARDAVQIIENGYHIKgDVQPIDQFPQTTHVESITVFE 453
Cdd:COG2265 334 VSCNPATLARDLALLVEGGYRLE-KVQPVDMFPHTHHVESVALLE 377
|
|
| rumA |
TIGR00479 |
23S rRNA (uracil-5-)-methyltransferase RumA; This protein family was first proposed to be RNA ... |
20-447 |
5.77e-147 |
|
23S rRNA (uracil-5-)-methyltransferase RumA; This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 129571 [Multi-domain] Cd Length: 431 Bit Score: 425.77 E-value: 5.77e-147
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 20 ITYEGNGVVKLDDFPIFVTNAVPGERVLVGVTKVASTYAFGRVIKRLVESPDRNNEIEANALLTGIAPLAHLNYDAQLKH 99
Cdd:TIGR00479 1 LDHQGEGVARFNGKTVFVPGALPGEKAEVRVTEVKKQYARARVKKILEDSPERTTPPCPHFGQCGGCQLQHLSYELQLRS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 100 KQKQVADVFNK----QHVDVEIAPTMGmDNPWGYRNKAQIP-TREINGLLTTGFYRRGSHRLVEIEDFLIQDPKIDEAIL 174
Cdd:TIGR00479 81 KQQQVIALLERigkfVSEPIEDVPTIG-DDPWGYRNKARLSlGRSPSGQLQAGFYQKGSHDIVDVKQCPVQAPALNALLP 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 175 VVRDILRKYHTEAYNEEIHKGTIRNIMVRRGYYSHEMMVVLVTRSKKLPLAEVIVQDIRAALPEVKSIVQNVNQEKTNVI 254
Cdd:TIGR00479 160 KVRAILENFGASRYLEHKELGQARHGVLRIGRHTGELSSVDRTALERFPHKEELDLYLQPDSPDVKSICQNINPEKTNVI 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 255 MGEKNNILWGKSTIKDQLLGKTFAIGPNSFYQVNPQMTERLYEMAAQKAELKSTDTVIDAYSGIGTISLAIADQVKQVIG 334
Cdd:TIGR00479 240 FGEETEVIAGEMPIYDKSGDLSFTFSARDFIQVNSGQNEKLVDRALEWLELQGEERVLDAYCGMGTFTLPLAKQAKSVVG 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 335 VEIVAGAVDDAKRNADINNIKNVKFELGKAEEKMVEWQDAEVAPDVIFVDPPRKGLTEELIVAATGMAPERIVYISCNPA 414
Cdd:TIGR00479 320 VEGVPESVEKAQQNAELNGIANVTFYHGTLETVLPKQPWAGNGFDKVLLDPPRKGCAAGVLRTIIKLKPERIVYVSCNPA 399
|
410 420 430
....*....|....*....|....*....|...
gi 497172810 415 TLARDAVQIIENGYHIKgDVQPIDQFPQTTHVE 447
Cdd:TIGR00479 400 TLARDLEALCKAGYTIA-RVQPVDMFPHTGHVE 431
|
|
| rumA |
PRK13168 |
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD; |
1-454 |
6.12e-70 |
|
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD;
Pssm-ID: 237291 [Multi-domain] Cd Length: 443 Bit Score: 228.50 E-value: 6.12e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 1 MKRKAPVVKNQEIEADVIDITYEGNGVVKLDDFPIFVTNAVPGERVLVGVTKVASTYAFGRVIKRLVESPDRnneieana 80
Cdd:PRK13168 4 YSPKRRVTTRQIITVTIESLDHDGRGVARHNGKTVFIEGALPGERVEVQVTEDKKQYARAKVVRILKPSPER-------- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 81 lltgIAP------------LAHLNYDAQLKHKQKQVADVFNK-QHVDVEIAPTMGMDNPWGYRNKAQIPTR--EINGLLT 145
Cdd:PRK13168 76 ----VTPrcphfgvcggcqLQHLSIDAQIASKQRALEDLLKHlAGVEPEEVLPPIAGPPWGYRRRARLSVRyvPKKGQLL 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 146 TGFYRRGSHRLVEIEDFLIQDPKIDEAILVVRDILRKYHteayneeihkgtirniMVRRgyyshemmvvlvtrskkLPLA 225
Cdd:PRK13168 152 VGFREKNSSDIVDIDQCPVLVPPLSALLPPLRALLSSLS----------------AKRR-----------------LGHV 198
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 226 EVIVQDIRAALpeVKSIVQNVNQEKTNVIM--GEKNNI-LW--GKSTIKDQLLGK--------------TFAIGPNSFYQ 286
Cdd:PRK13168 199 ELAQGDNGTAL--VLRHLEPLSEADRAKLRafAEQHGLqLYlqPKGPDLVHLLGPadaqlsyylpefglRLAFSPRDFIQ 276
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 287 VNPQMTERLYEMAAQKAELKSTDTVIDAYSGIGTISLAIADQVKQVIGVEIVAGAVDDAKRNADINNIKNVKF---ELGK 363
Cdd:PRK13168 277 VNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFyhaNLEE 356
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 364 AEEKMvEWQDAEVapDVIFVDPPRKGlTEELIVAATGMAPERIVYISCNPATLARDAVQIIENGYHIKGdVQPIDQFPQT 443
Cdd:PRK13168 357 DFTDQ-PWALGGF--DKVLLDPPRAG-AAEVMQALAKLGPKRIVYVSCNPATLARDAGVLVEAGYRLKR-AGMLDMFPHT 431
|
490
....*....|.
gi 497172810 444 THVESITVFEK 454
Cdd:PRK13168 432 GHVESMALFER 442
|
|
| rumB |
PRK03522 |
23S rRNA (uracil(747)-C(5))-methyltransferase RlmC; |
167-455 |
1.39e-48 |
|
23S rRNA (uracil(747)-C(5))-methyltransferase RlmC;
Pssm-ID: 235128 [Multi-domain] Cd Length: 315 Bit Score: 168.51 E-value: 1.39e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 167 PKIDEAILVVRDILRKYHTEAYNEEIHKGTIRNIMVRRGYYSHEMMVVLVTRSK-KLPLAEVIVQDIRAALPEVKSIVQN 245
Cdd:PRK03522 32 ASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQSDGELMLRFVLRSEtKLARLRRALPWLQAQLPQLKVISVN 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 246 VNQEKTNVIMGEKNNILWGKSTIKDQLLGKTFAIGPNSFYQVNPQMTERLYEMAAQ-KAELKSTdTVIDAYSGIGTISLA 324
Cdd:PRK03522 112 IQPVHMAILEGEEEIFLTEQQALPERFNGVPLFIRPQSFFQTNPAVAAQLYATARDwVRELPPR-SMWDLFCGVGGFGLH 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 325 IADQVKQVIGVEIVAGAVDDAKRNADINNIKNVKFELGKAeekmVEW-QDAEVAPDVIFVDPPRKGLTEELIVAATGMAP 403
Cdd:PRK03522 191 CATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDS----TQFaTAQGEVPDLVLVNPPRRGIGKELCDYLSQMAP 266
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 497172810 404 ERIVYISCNPATLARDAVQIieNGYHIKgDVQPIDQFPQTTHVESITVFEKN 455
Cdd:PRK03522 267 RFILYSSCNAQTMAKDLAHL--PGYRIE-RVQLFDMFPHTAHYEVLTLLVRQ 315
|
|
| meth_trns_rumB |
TIGR02085 |
23S rRNA (uracil-5-)-methyltransferase RumB; This family consists of RNA methyltransferases ... |
93-454 |
1.33e-40 |
|
23S rRNA (uracil-5-)-methyltransferase RumB; This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 131140 Cd Length: 374 Bit Score: 149.22 E-value: 1.33e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 93 YDAQLKHKQKQVADVFNKQHVDVE-IAPTMGMDNpwGYRNKAQIPT-----REINGLLttgfYRRGSHrlVEIEDFLIQD 166
Cdd:TIGR02085 20 YSEQLTNKQQHLKELLAPNATVVQwLAPVTSAEQ--AFRNKAKMVVsgsveRPILGIL----HRDGTP--LDLCDCPLYP 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 167 PKIDEAILVVRDILRKYHTEAYNEEIHKGTIRNIMVRRGYYSHEMMVVLVTRSK-KLPLAEVIVQDIRAALPEVKSIVQN 245
Cdd:TIGR02085 92 QSFQPVFAYLKNFIARAGLTPYNVAKKKGELKFILLTESENSGQLMLRFVLRSEtKLAQIRRALPWLIEQLPQLEVISVN 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 246 VNQEKTNVIMGEKNNILWGKSTIKDQLLGKTFAIGPNSFYQVNPQMTERLYEMAAQKAELKSTDTVIDAYSGIGTISLAI 325
Cdd:TIGR02085 172 IQPVHMAILEGEEEIFLTEQQALPERFNDVPLVIRPQSFFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHC 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 326 ADQVKQVIGVEIVAGAVDDAKRNADINNIKNVKFE-LGKAEEKMVEWQdaevAPDVIFVDPPRKGLTEELIVAATGMAPE 404
Cdd:TIGR02085 252 AGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAaLDSAKFATAQMS----APELVLVNPPRRGIGKELCDYLSQMAPK 327
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 497172810 405 RIVYISCNPATLARDAVQIieNGYHIKgDVQPIDQFPQTTHVESITVFEK 454
Cdd:TIGR02085 328 FILYSSCNAQTMAKDIAEL--SGYQIE-RVQLFDMFPHTSHYEVLTLLVR 374
|
|
| PRK05031 |
PRK05031 |
tRNA (uracil-5-)-methyltransferase; Validated |
92-455 |
2.21e-26 |
|
tRNA (uracil-5-)-methyltransferase; Validated
Pssm-ID: 235332 Cd Length: 362 Bit Score: 109.53 E-value: 2.21e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 92 NYDAQLKHKQKQVADVFNKQHV-DVEIAPTmgmdNPWGYRNKAQIPTREINGLLTTGFYRRGSHRLVEIEDFLIQDPKID 170
Cdd:PRK05031 10 QYEAQLAEKVARLKELFAPFSApEPEVFRS----PPSHYRMRAEFRIWHEGDDLYYAMFDQQTKQRIRIDQFPIASELIN 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 171 EAILVVRDILRKyhteayNEEI-HK-------GTIRNimvrrgyyshEMMVVLVTRsKKLPlaevivQDIRAALPEVKSI 242
Cdd:PRK05031 86 ALMPALLAALRA------NPVLrHKlfqvdflSTLSG----------EILVSLLYH-KKLD------EEWEQAAKALRDA 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 243 VQNVNqektnvIMG--EKNNILWGKSTIKDQL--LGKTFA--IGPNSFYQVNPQMTERLYEMAAQKAElKSTDTVIDAYS 316
Cdd:PRK05031 143 LFNVH------LIGrsRKQKIVLDQDYVDERLpvAGREFIyrQVENSFTQPNAAVNEKMLEWALDATK-GSKGDLLELYC 215
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 317 GIGTISLAIADQVKQVIGVEIVAGAVDDAKRNADINNIKNVKF------ELGKAEEKMVEW---QDAEV---APDVIFVD 384
Cdd:PRK05031 216 GNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIirmsaeEFTQAMNGVREFnrlKGIDLksyNFSTIFVD 295
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 497172810 385 PPRKGL---TEELIVAAtgmapERIVYISCNPATLARDaVQIIENGYHIKgDVQPIDQFPQTTHVESITVFEKN 455
Cdd:PRK05031 296 PPRAGLddeTLKLVQAY-----ERILYISCNPETLCEN-LETLSQTHKVE-RFALFDQFPYTHHMECGVLLEKK 362
|
|
| tRNA_U5-meth_tr |
pfam05958 |
tRNA (Uracil-5-)-methyltransferase; This family consists of (Uracil-5-)-methyltransferases EC: ... |
282-454 |
5.31e-22 |
|
tRNA (Uracil-5-)-methyltransferase; This family consists of (Uracil-5-)-methyltransferases EC:2.1.1.35 from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalyzed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity.
Pssm-ID: 428692 Cd Length: 357 Bit Score: 96.74 E-value: 5.31e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 282 NSFYQVNPQMTERLYEMAAQKAElKSTDTVIDAYSGIGTISLAIADQVKQVIGVEIVAGAVDDAKRNADINNIKNVKF-- 359
Cdd:pfam05958 177 NSFTQPNAAVNIKMLEWACDVTQ-GSKGDLLELYCGNGNFSLALARNFRKVLATEIAKPSVAAAQYNIAANNIDNVQIir 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 360 ----ELGKAEEKMVEW---QDAEV---APDVIFVDPPRKGLTEELIVAATGMapERIVYISCNPATLARDAVQIIENgyH 429
Cdd:pfam05958 256 msaeEFTQAMNGVREFnrlKGIDLksyNCSTIFVDPPRAGLDPETLKLVQAY--PRILYISCNPETLCANLEQLSKT--H 331
|
170 180
....*....|....*....|....*
gi 497172810 430 IKGDVQPIDQFPQTTHVESITVFEK 454
Cdd:pfam05958 332 RVERFALFDQFPYTHHMECGVLLEK 356
|
|
| COG3269 |
COG3269 |
Predicted RNA-binding protein, contains TRAM domain [General function prediction only]; |
3-66 |
6.47e-13 |
|
Predicted RNA-binding protein, contains TRAM domain [General function prediction only];
Pssm-ID: 442500 [Multi-domain] Cd Length: 129 Bit Score: 65.46 E-value: 6.47e-13
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 497172810 3 RKAPVVKNQEIEADVIDITYEGNGVVKLDDFPIFVTNAVPGERVLVGVTKVASTYAFGRVIKRL 66
Cdd:COG3269 66 LTPPVEEGEEYEVEIEDIGKKGDGIARVEGFVIFVPGAEVGDRVKVKITKVKRNFAFAEVVERL 129
|
|
| PRK09328 |
PRK09328 |
N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional |
292-362 |
1.36e-07 |
|
N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Pssm-ID: 236467 [Multi-domain] Cd Length: 275 Bit Score: 52.86 E-value: 1.36e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 497172810 292 TERLYEMAAQKAELKSTDTVIDAYSGIGTISLAIADQVK--QVIGVEIVAGAVDDAKRNADINNIKNVKFELG 362
Cdd:PRK09328 93 TEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPdaEVTAVDISPEALAVARRNAKHGLGARVEFLQG 165
|
|
| Methyltransf_31 |
pfam13847 |
Methyltransferase domain; This family appears to have methyltransferase activity. |
305-382 |
1.43e-07 |
|
Methyltransferase domain; This family appears to have methyltransferase activity.
Pssm-ID: 463998 [Multi-domain] Cd Length: 150 Bit Score: 50.88 E-value: 1.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 305 LKSTDTVIDAYSGIGTISLAIADQV---KQVIGVEIVAGAVDDAKRNADINNIKNVKFELGKAEEKMVEWQDAEVapDVI 381
Cdd:pfam13847 1 IDKGMRVLDLGCGTGHLSFELAEELgpnAEVVGIDISEEAIEKARENAQKLGFDNVEFEQGDIEELPELLEDDKF--DVV 78
|
.
gi 497172810 382 F 382
Cdd:pfam13847 79 I 79
|
|
| AdoMet_MTases |
cd02440 |
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ... |
310-386 |
1.62e-07 |
|
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Pssm-ID: 100107 [Multi-domain] Cd Length: 107 Bit Score: 49.35 E-value: 1.62e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 497172810 310 TVIDAYSGIGTISLAIADQ-VKQVIGVEIVAGAVDDAKRNADINNIKNVKFELGKAEEkmvEWQDAEVAPDVIFVDPP 386
Cdd:cd02440 1 RVLDLGCGTGALALALASGpGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEE---LPPEADESFDVIISDPP 75
|
|
| Trm11 |
COG1041 |
tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]; tRNA G10 ... |
291-452 |
1.32e-06 |
|
tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]; tRNA G10 N-methylase Trm11 is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 440663 [Multi-domain] Cd Length: 172 Bit Score: 48.41 E-value: 1.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 291 MTERLYEMAAQKAELKSTDTVIDAYSGIGTISLAIADQVKQVIGVEIVAGAVDDAKRNADINNIKNVKFELGKAEEkmVE 370
Cdd:COG1041 10 LDPRLARALVNLAGAKEGDTVLDPFCGTGTILIEAGLLGRRVIGSDIDPKMVEGARENLEHYGYEDADVIRGDARD--LP 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 371 WQDAEVapDVIFVDPP--------RKGLTEELIVAATGMAP-----ERIVYIScnPATLARdavQIIENGYHIkgdvqpI 437
Cdd:COG1041 88 LADESV--DAIVTDPPygrsskisGEELLELYEKALEEAARvlkpgGRVVIVT--PRDIDE---LLEEAGFKV------L 154
|
170
....*....|....*...
gi 497172810 438 DQFPQTTH---VESITVF 452
Cdd:COG1041 155 ERHEQRVHkslTRYILVL 172
|
|
| PRK14968 |
PRK14968 |
putative methyltransferase; Provisional |
300-360 |
5.02e-06 |
|
putative methyltransferase; Provisional
Pssm-ID: 237872 [Multi-domain] Cd Length: 188 Bit Score: 46.82 E-value: 5.02e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 497172810 300 AQKAELKSTDTVIDAYSGIGTISLAIADQVKQVIGVEIVAGAVDDAKRNADINNIKNVKFE 360
Cdd:PRK14968 16 AENAVDKKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVE 76
|
|
| CobL |
COG2242 |
Precorrin-6B methylase 2 [Coenzyme transport and metabolism]; Precorrin-6B methylase 2 is part ... |
270-383 |
7.62e-06 |
|
Precorrin-6B methylase 2 [Coenzyme transport and metabolism]; Precorrin-6B methylase 2 is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis
Pssm-ID: 441843 [Multi-domain] Cd Length: 403 Bit Score: 47.85 E-value: 7.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 270 DQLLGKTFAIGPNSFYQVNPQMTERlyEMAAQ---KAELKSTDTVIDAYSGIGTISLAIADQVK--QVIGVEIVAGAVDD 344
Cdd:COG2242 209 GARLPRTPGLPDEAFERDKGPITKR--EVRALtlaKLALRPGDVLWDIGAGSGSVSIEAARLAPggRVYAIERDPERAAL 286
|
90 100 110
....*....|....*....|....*....|....*....
gi 497172810 345 AKRNADINNIKNVKFELGKAEEKMVEWQDaevaPDVIFV 383
Cdd:COG2242 287 IRANARRFGVPNVEVVEGEAPEALADLPD----PDAVFI 321
|
|
| UbiE |
COG2226 |
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; ... |
295-392 |
8.34e-06 |
|
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG is part of the Pathway/BioSystem: Biotin biosynthesis
Pssm-ID: 441828 [Multi-domain] Cd Length: 143 Bit Score: 45.37 E-value: 8.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 295 LYEMAAQKAELKSTDTVIDAYSGIGTISLAIADQVKQVIGVEIVAGAVDDAKRNADINNIkNVKFELGKAEEkmVEWQDA 374
Cdd:COG2226 10 GREALLAALGLRPGARVLDLGCGTGRLALALAERGARVTGVDISPEMLELARERAAEAGL-NVEFVVGDAED--LPFPDG 86
|
90 100
....*....|....*....|....*
gi 497172810 375 EVapDVI-------FVDPPRKGLTE 392
Cdd:COG2226 87 SF--DLVissfvlhHLPDPERALAE 109
|
|
| TRAM |
pfam01938 |
TRAM domain; This small domain has no known function. However it may perform a nucleic acid ... |
6-63 |
9.79e-06 |
|
TRAM domain; This small domain has no known function. However it may perform a nucleic acid binding role (Bateman A. unpublished observation).
Pssm-ID: 396497 [Multi-domain] Cd Length: 59 Bit Score: 42.97 E-value: 9.79e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 497172810 6 PVVKNQEIEADVIDITYEGNGVVKLDD-FPIFVTNAVPGERVLVGVTKVASTYAFGRVI 63
Cdd:pfam01938 1 RRYVGQTQEVLVEGLSSNGEGIGRTDNgKVVFVPGALPGEFVEVKITKVKRNYLRGELL 59
|
|
| PRK12336 |
PRK12336 |
translation initiation factor IF-2 subunit beta; Provisional |
2-63 |
1.31e-05 |
|
translation initiation factor IF-2 subunit beta; Provisional
Pssm-ID: 183451 [Multi-domain] Cd Length: 201 Bit Score: 45.71 E-value: 1.31e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 497172810 2 KRKAPVVKN-------QEIEADVIDITYEGNGVVKLDDFPIFVTNAVPGERVLVGVTKVASTYAFGRVI 63
Cdd:PRK12336 133 KRKASSETQreaieegKTYEVEITGTGRKGDGVAKKGKYTIFVPGAKKGEVVKVKIKKISGNLAFAERA 201
|
|
| TrmN6 |
COG4123 |
tRNA1(Val) A37 N6-methylase TrmN6 [Translation, ribosomal structure and biogenesis]; tRNA1(Val) ... |
303-386 |
1.43e-05 |
|
tRNA1(Val) A37 N6-methylase TrmN6 [Translation, ribosomal structure and biogenesis]; tRNA1(Val) A37 N6-methylase TrmN6 is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 443299 [Multi-domain] Cd Length: 238 Bit Score: 46.29 E-value: 1.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 303 AELKSTDTVIDAYSGIGTISLAIADQVK--QVIGVEIVAGAVDDAKRNADINNIKN-VKFELGKAEEKMVEWQDAEVapD 379
Cdd:COG4123 33 APVKKGGRVLDLGTGTGVIALMLAQRSPgaRITGVEIQPEAAELARRNVALNGLEDrITVIHGDLKEFAAELPPGSF--D 110
|
....*..
gi 497172810 380 VIFVDPP 386
Cdd:COG4123 111 LVVSNPP 117
|
|
| SmtA |
COG0500 |
SAM-dependent methyltransferase [Secondary metabolites biosynthesis, transport and catabolism, ... |
299-422 |
1.44e-05 |
|
SAM-dependent methyltransferase [Secondary metabolites biosynthesis, transport and catabolism, General function prediction only];
Pssm-ID: 440266 [Multi-domain] Cd Length: 199 Bit Score: 45.68 E-value: 1.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 299 AAQKAELKSTDTVIDAYSGIGTISLAIADQVK-QVIGVEIVAGAVDDAKRNADINNIKNVKFELGKAEekmvEWQDAEVA 377
Cdd:COG0500 18 LALLERLPKGGRVLDLGCGTGRNLLALAARFGgRVIGIDLSPEAIALARARAAKAGLGNVEFLVADLA----ELDPLPAE 93
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 497172810 378 P-DVIF-------VDP-PRKGLTEELivaATGMAPERIVYISCNPATLARDAVQ 422
Cdd:COG0500 94 SfDLVVafgvlhhLPPeEREALLREL---ARALKPGGVLLLSASDAAAALSLAR 144
|
|
| HemK |
COG2890 |
Methylase of polypeptide chain release factors [Translation, ribosomal structure and ... |
292-362 |
3.53e-05 |
|
Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis];
Pssm-ID: 442135 [Multi-domain] Cd Length: 282 Bit Score: 45.53 E-value: 3.53e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 497172810 292 TERLYEMAAQKAELKSTDTVIDaysgIGT----ISLAIADQVK--QVIGVEIVAGAVDDAKRNADINNIKN-VKFELG 362
Cdd:COG2890 97 TEELVELALALLPAGAPPRVLD----LGTgsgaIALALAKERPdaRVTAVDISPDALAVARRNAERLGLEDrVRFLQG 170
|
|
| arsM |
PRK11873 |
arsenite methyltransferase; |
303-381 |
9.28e-05 |
|
arsenite methyltransferase;
Pssm-ID: 237007 [Multi-domain] Cd Length: 272 Bit Score: 44.17 E-value: 9.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 303 AELKSTDTVIDAYSGIGTISLAIADQVK---QVIGVEIVAGAVDDAKRNADINNIKNVKFELGKAEEKMVEwqDAEVapD 379
Cdd:PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGptgKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVA--DNSV--D 148
|
..
gi 497172810 380 VI 381
Cdd:PRK11873 149 VI 150
|
|
| RsmC |
COG2813 |
16S rRNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]; 16S rRNA ... |
304-398 |
2.59e-04 |
|
16S rRNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]; 16S rRNA G1207 methylase RsmC is part of the Pathway/BioSystem: 16S rRNA modification
Pssm-ID: 442062 [Multi-domain] Cd Length: 191 Bit Score: 41.71 E-value: 2.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 304 ELKSTDTVIDAYSGIGTISLAIADQ--VKQVIGVEIVAGAVDDAKRNADINNIKNVKFelgkaeekmvEWQDA--EVAP- 378
Cdd:COG2813 46 PEPLGGRVLDLGCGYGVIGLALAKRnpEARVTLVDVNARAVELARANAAANGLENVEV----------LWSDGlsGVPDg 115
|
90 100
....*....|....*....|....*....
gi 497172810 379 --DVIFVDPP-------RKGLTEELIVAA 398
Cdd:COG2813 116 sfDLILSNPPfhagravDKEVAHALIADA 144
|
|
| RlmK |
COG1092 |
23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI [Translation, ribosomal structure ... |
294-446 |
4.03e-04 |
|
23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI [Translation, ribosomal structure and biogenesis]; 23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI is part of the Pathway/BioSystem: 23S rRNA modification
Pssm-ID: 440709 [Multi-domain] Cd Length: 392 Bit Score: 42.48 E-value: 4.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 294 RLYEMAAQKaelkstdTVIDAYSGIGTISLAIADQ-VKQVIGVEIVAGAVDDAKRNADINNIK-NVKFELGKAEEKMVEW 371
Cdd:COG1092 210 RVAELAKGK-------RVLNLFSYTGGFSVHAAAGgAKSVTSVDLSATALEWAKENAALNGLDdRHEFVQADAFDWLREL 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 372 QDAEVAPDVIFVDPP-----RKGLT------EELIVAATGM-APERIVYISCN---------PATLARDA------VQII 424
Cdd:COG1092 283 AREGERFDLIILDPPafaksKKDLFdaqrdyKDLNRLALKLlAPGGILVTSSCsrhfsldlfLEILARAArdagrrVRII 362
|
170 180
....*....|....*....|..
gi 497172810 425 ENGYhikgdvQPIDqFPQTTHV 446
Cdd:COG1092 363 ERLT------QPPD-HPVLPAF 377
|
|
| Methyltransf_25 |
pfam13649 |
Methyltransferase domain; This family appears to be a methyltransferase domain. |
316-366 |
9.83e-04 |
|
Methyltransferase domain; This family appears to be a methyltransferase domain.
Pssm-ID: 463945 [Multi-domain] Cd Length: 96 Bit Score: 38.31 E-value: 9.83e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 497172810 316 SGIGTISLAIADQVK-QVIGVEIVAGAVDDAKRNADINNIkNVKFELGKAEE 366
Cdd:pfam13649 6 CGTGRLTLALARRGGaRVTGVDLSPEMLERARERAAEAGL-NVEFVQGDAED 56
|
|
| COG4976 |
COG4976 |
Predicted methyltransferase, contains TPR repeat [General function prediction only]; |
293-382 |
3.21e-03 |
|
Predicted methyltransferase, contains TPR repeat [General function prediction only];
Pssm-ID: 444001 [Multi-domain] Cd Length: 181 Bit Score: 38.44 E-value: 3.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 293 ERLYEMAAQKAELKSTDTVIDAYSGIGTISLAIADQVKQVIGVEIVAGAVDDAKRnadinniKNVKFELGKAEekMVEWQ 372
Cdd:COG4976 32 ALLAEELLARLPPGPFGRVLDLGCGTGLLGEALRPRGYRLTGVDLSEEMLAKARE-------KGVYDRLLVAD--LADLA 102
|
90
....*....|
gi 497172810 373 DAEVAPDVIF 382
Cdd:COG4976 103 EPDGRFDLIV 112
|
|
| RsmD |
COG0742 |
16S rRNA G966 N2-methylase RsmD [Translation, ribosomal structure and biogenesis]; 16S rRNA ... |
310-409 |
4.60e-03 |
|
16S rRNA G966 N2-methylase RsmD [Translation, ribosomal structure and biogenesis]; 16S rRNA G966 N2-methylase RsmD is part of the Pathway/BioSystem: 16S rRNA modification
Pssm-ID: 440505 [Multi-domain] Cd Length: 183 Bit Score: 38.14 E-value: 4.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 310 TVIDAYSGIGTISL-AIADQVKQVIGVEIVAGAVDDAKRNadinnIKNVKFElGKAEekmVEWQDAEVAP--------DV 380
Cdd:COG0742 44 RVLDLFAGSGALGLeALSRGAASVVFVEKDRKAAAVIRKN-----LEKLGLE-DRAR---VIRGDALRFLkrlagepfDL 114
|
90 100 110
....*....|....*....|....*....|...
gi 497172810 381 IFVDPP-RKGLTEELI--VAATGM-APERIVYI 409
Cdd:COG0742 115 VFLDPPyAKGLLEKALelLAENGLlAPGGLIVV 147
|
|
| Cons_hypoth95 |
pfam03602 |
Conserved hypothetical protein 95; |
310-409 |
5.45e-03 |
|
Conserved hypothetical protein 95;
Pssm-ID: 427391 [Multi-domain] Cd Length: 179 Bit Score: 37.60 E-value: 5.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497172810 310 TVIDAYSGIGTISL-AIADQVKQVIGVEIVAGAVDDAKRNADINNIKNVKFELGKAEEKMVEWQDAEVApDVIFVDPP-R 387
Cdd:pfam03602 44 RVLDLFAGSGALGLeALSRGAKRVTLVEKDKRAVQILKENLQLLGLPGAVLVMDALLALLRLAGKGPVF-DIVFLDPPyA 122
|
90 100
....*....|....*....|....*
gi 497172810 388 KGLTEELI--VAATG-MAPERIVYI 409
Cdd:pfam03602 123 KGLIEEVLdlLAEKGwLKPNALIYV 147
|
|
| Trm5 |
COG2520 |
tRNA G37 N-methylase Trm5 [Translation, ribosomal structure and biogenesis]; tRNA G37 ... |
292-356 |
6.97e-03 |
|
tRNA G37 N-methylase Trm5 [Translation, ribosomal structure and biogenesis]; tRNA G37 N-methylase Trm5 is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 442010 [Multi-domain] Cd Length: 333 Bit Score: 38.30 E-value: 6.97e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 497172810 292 TERLyEMAAQkaeLKSTDTVIDAYSGIGTISLAIAD-QVKQVIGVEIVAGAVDDAKRNADINNIKN 356
Cdd:COG2520 169 TERL-RIAEL---VKPGERVLDMFAGVGPFSIPIAKrSGAKVVAIDINPDAVEYLKENIRLNKVED 230
|
|
| UbiG |
COG2227 |
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and ... |
310-382 |
9.16e-03 |
|
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and metabolism]; 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase is part of the Pathway/BioSystem: Ubiquinone biosynthesis
Pssm-ID: 441829 [Multi-domain] Cd Length: 126 Bit Score: 36.15 E-value: 9.16e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 497172810 310 TVIDAYSGIGTISLAIADQVKQVIGVEIVAGAVDDAKRNADINNIknvKFELGKAEEkmVEWQDAEVapDVIF 382
Cdd:COG2227 27 RVLDVGCGTGRLALALARRGADVTGVDISPEALEIARERAAELNV---DFVQGDLED--LPLEDGSF--DLVI 92
|
|
| |
