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Conserved domains on  [gi|496843453|ref|WP_009382788|]
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30S ribosomal protein S17 [Staphylococcus massiliensis]

Protein Classification

30S ribosomal protein S17( domain architecture ID 10012501)

30S ribosomal protein S17 is one of the primary rRNA binding proteins; it binds specifically to the 5'-end of 16S ribosomal RNA and plays a role in translational accuracy

Gene Ontology:  GO:0005840|GO:0006412|GO:0003735|GO:0019843
PubMed:  24524803

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rpsQ PRK05610
30S ribosomal protein S17; Reviewed
 2-85 7.49e-42

30S ribosomal protein S17; Reviewed


:

Pssm-ID: 235532  Cd Length: 84  Bit Score: 131.43  E-value: 7.49e-42
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496843453  2 TERNDRKVYIGRVVSDKMDKTVTVLVETYKTHKLYGKRVKYSKKYKTHDENNSAKLGDIVKIQETRPLSATKRFRLVEIV 81
Cdd:PRK05610  1 EERMPRKTLQGRVVSDKMDKTIVVLVERRVKHPLYGKIVKRSKKYHAHDENNEAKIGDVVRIMETRPLSKTKRWRLVEIV 80


                ....
gi 496843453 82 EESV 85
Cdd:PRK05610 81 EKAV 84
 
Name Accession Description Interval E-value
rpsQ PRK05610
30S ribosomal protein S17; Reviewed
 2-85 7.49e-42

30S ribosomal protein S17; Reviewed


Pssm-ID: 235532  Cd Length: 84  Bit Score: 131.43  E-value: 7.49e-42
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496843453  2 TERNDRKVYIGRVVSDKMDKTVTVLVETYKTHKLYGKRVKYSKKYKTHDENNSAKLGDIVKIQETRPLSATKRFRLVEIV 81
Cdd:PRK05610  1 EERMPRKTLQGRVVSDKMDKTIVVLVERRVKHPLYGKIVKRSKKYHAHDENNEAKIGDVVRIMETRPLSKTKRWRLVEIV 80


                ....
gi 496843453 82 EESV 85
Cdd:PRK05610 81 EKAV 84
RpsQ COG0186
Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17 ...
 1-86 1.44e-40

Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439956  Cd Length: 87  Bit Score: 128.31  E-value: 1.44e-40
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496843453  1 MTERNDRKVYIGRVVSDKMDKTVTVLVETYKTHKLYGKRVKYSKKYKTHDENNSAKLGDIVKIQETRPLSATKRFRLVEI 80
Cdd:COG0186   2 SEERVRRKTLTGVVVSDKMDKTVVVEVERRVKHPLYGKYVRRSKKYHAHDENNECKVGDTVRIMETRPLSKTKRWRVVEI 81


                ....*.
gi 496843453 81 VEESVI 86
Cdd:COG0186  82 VEKAKE 87
uS17_bact TIGR03635
ribosomal protein uS17, bacterial form; This model describes the bacterial ribosomal small ...
 7-78 3.26e-34

ribosomal protein uS17, bacterial form; This model describes the bacterial ribosomal small subunit protein S17, while excluding cytosolic eukaryotic homologs and archaeal homologs. The model finds many, but not, chloroplast and mitochondrial counterparts to bacterial S17. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 274691  Cd Length: 72  Bit Score: 111.86  E-value: 3.26e-34
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 496843453   7 RKVYIGRVVSDKMDKTVTVLVETYKTHKLYGKRVKYSKKYKTHDENNSAKLGDIVKIQETRPLSATKRFRLV 78
Cdd:TIGR03635  1 RKTLQGVVVSDKMDKTVVVLVERRVKHPLYKKIVKRTKKYHAHDENNECKVGDVVRIIETRPLSKTKRWRLV 72
Ribosomal_uS17 cd00364
Ribosomal protein uS17; Ribosomal protein uS17 is one of the three primary assembly proteins ...
 8-80 1.34e-32

Ribosomal protein uS17; Ribosomal protein uS17 is one of the three primary assembly proteins (S4, S17 and S20) that stabilize the entire 5' rRNA domain and increase the global stability of the rRNA structure. uS17 is highly conserved in all three major phylogenetic divisions. In eukaryotes, the S17 ortholog of the cytoplasmic ribosome is called S11 as are those of the mitochondrial and chloroplast ribosomes. uS17 plays a critical role in both subunit assembly and translational fidelity.


Pssm-ID: 466775  Cd Length: 73  Bit Score: 107.51  E-value: 1.34e-32
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 496843453  8 KVYIGRVVSDKMDKTVTVLVETYKTHKLYGKRVKYSKKYKTHDENNSAKLGDIVKIQETRPLSATKRFRLVEI 80
Cdd:cd00364   1 KILIGVVVSDKMDKTVVVRVERLVYHPKYKKYVKRTKKYHAHDEPNECKVGDIVRIGECRPLSKTKRWVVVEI 73
Ribosomal_S17 pfam00366
Ribosomal protein S17;
12-79 5.95e-32

Ribosomal protein S17;


Pssm-ID: 459784  Cd Length: 68  Bit Score: 105.93  E-value: 5.95e-32
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 496843453  12 GRVVSDKMDKTVTVLVETYKTHKLYGKRVKYSKKYKTHDENNSAKLGDIVKIQETRPLSATKRFRLVE 79
Cdd:pfam00366  1 GVVVSDKMDKTVVVRVERLVYHPKYKKYVKRTKKYHAHDENNECKVGDVVRIGECRPLSKTKRWVVVE 68
 
Name Accession Description Interval E-value
rpsQ PRK05610
30S ribosomal protein S17; Reviewed
 2-85 7.49e-42

30S ribosomal protein S17; Reviewed


Pssm-ID: 235532  Cd Length: 84  Bit Score: 131.43  E-value: 7.49e-42
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496843453  2 TERNDRKVYIGRVVSDKMDKTVTVLVETYKTHKLYGKRVKYSKKYKTHDENNSAKLGDIVKIQETRPLSATKRFRLVEIV 81
Cdd:PRK05610  1 EERMPRKTLQGRVVSDKMDKTIVVLVERRVKHPLYGKIVKRSKKYHAHDENNEAKIGDVVRIMETRPLSKTKRWRLVEIV 80


                ....
gi 496843453 82 EESV 85
Cdd:PRK05610 81 EKAV 84
RpsQ COG0186
Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17 ...
 1-86 1.44e-40

Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439956  Cd Length: 87  Bit Score: 128.31  E-value: 1.44e-40
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496843453  1 MTERNDRKVYIGRVVSDKMDKTVTVLVETYKTHKLYGKRVKYSKKYKTHDENNSAKLGDIVKIQETRPLSATKRFRLVEI 80
Cdd:COG0186   2 SEERVRRKTLTGVVVSDKMDKTVVVEVERRVKHPLYGKYVRRSKKYHAHDENNECKVGDTVRIMETRPLSKTKRWRVVEI 81


                ....*.
gi 496843453 81 VEESVI 86
Cdd:COG0186  82 VEKAKE 87
uS17_bact TIGR03635
ribosomal protein uS17, bacterial form; This model describes the bacterial ribosomal small ...
 7-78 3.26e-34

ribosomal protein uS17, bacterial form; This model describes the bacterial ribosomal small subunit protein S17, while excluding cytosolic eukaryotic homologs and archaeal homologs. The model finds many, but not, chloroplast and mitochondrial counterparts to bacterial S17. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 274691  Cd Length: 72  Bit Score: 111.86  E-value: 3.26e-34
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 496843453   7 RKVYIGRVVSDKMDKTVTVLVETYKTHKLYGKRVKYSKKYKTHDENNSAKLGDIVKIQETRPLSATKRFRLV 78
Cdd:TIGR03635  1 RKTLQGVVVSDKMDKTVVVLVERRVKHPLYKKIVKRTKKYHAHDENNECKVGDVVRIIETRPLSKTKRWRLV 72
Ribosomal_uS17 cd00364
Ribosomal protein uS17; Ribosomal protein uS17 is one of the three primary assembly proteins ...
 8-80 1.34e-32

Ribosomal protein uS17; Ribosomal protein uS17 is one of the three primary assembly proteins (S4, S17 and S20) that stabilize the entire 5' rRNA domain and increase the global stability of the rRNA structure. uS17 is highly conserved in all three major phylogenetic divisions. In eukaryotes, the S17 ortholog of the cytoplasmic ribosome is called S11 as are those of the mitochondrial and chloroplast ribosomes. uS17 plays a critical role in both subunit assembly and translational fidelity.


Pssm-ID: 466775  Cd Length: 73  Bit Score: 107.51  E-value: 1.34e-32
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 496843453  8 KVYIGRVVSDKMDKTVTVLVETYKTHKLYGKRVKYSKKYKTHDENNSAKLGDIVKIQETRPLSATKRFRLVEI 80
Cdd:cd00364   1 KILIGVVVSDKMDKTVVVRVERLVYHPKYKKYVKRTKKYHAHDEPNECKVGDIVRIGECRPLSKTKRWVVVEI 73
Ribosomal_S17 pfam00366
Ribosomal protein S17;
12-79 5.95e-32

Ribosomal protein S17;


Pssm-ID: 459784  Cd Length: 68  Bit Score: 105.93  E-value: 5.95e-32
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 496843453  12 GRVVSDKMDKTVTVLVETYKTHKLYGKRVKYSKKYKTHDENNSAKLGDIVKIQETRPLSATKRFRLVE 79
Cdd:pfam00366  1 GVVVSDKMDKTVVVRVERLVYHPKYKKYVKRTKKYHAHDENNECKVGDVVRIGECRPLSKTKRWVVVE 68
rps17 CHL00142
ribosomal protein S17; Validated
 11-87 2.28e-25

ribosomal protein S17; Validated


Pssm-ID: 177064  Cd Length: 84  Bit Score: 89.72  E-value: 2.28e-25
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 496843453 11 IGRVVSDKMDKTVTVLVETYKTHKLYGKRVKYSKKYKTHDENNSAKLGDIVKIQETRPLSATKRFRLVEIVEESVII 87
Cdd:CHL00142  7 IGIVVSNKMNKTIVVAVENRYKHPIYGKIITKTKKYLVHDEENECNIGDQVLIEETRPLSKTKRWILKEILSKSSLS 83
rps17p PRK08572
30S ribosomal protein S17P; Reviewed
 8-83 2.21e-13

30S ribosomal protein S17P; Reviewed


Pssm-ID: 236296 [Multi-domain]  Cd Length: 108  Bit Score: 59.93  E-value: 2.21e-13
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 496843453   8 KVYIGRVVSDKMDKTVTVLVETYKTHKLYGKRVKYSKKYKTHD-ENNSAKLGDIVKIQETRPLSATKRFRLVEIVEE 83
Cdd:PRK08572  30 QVLEGTVVSDKMHKTVVVEREYLHYVPKYERYEKRRSRIHAHNpPCIDAKVGDKVKIAECRPLSKTKSFVVVEKKER 106
PTZ00241 PTZ00241
40S ribosomal protein S11; Provisional
 8-86 1.37e-04

40S ribosomal protein S11; Provisional


Pssm-ID: 240326 [Multi-domain]  Cd Length: 158  Bit Score: 38.14  E-value: 1.37e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496843453   8 KVYIGRVVSDKMDKTVTVLVETYKTHKLYGKrvkYSKKYKTHDENNS----AKLGDIVKIQETRPLSATKRFRLVEIVEE 83
Cdd:PTZ00241  69 RILRGVVISTKMKRTIIIRRDYLHYVKKYNR---YEKRHKNIPVHCSpcfdVKEGDIVVVGQCRPLSKTVRFNVLKVEKN 145


                 ...
gi 496843453  84 SVI 86
Cdd:PTZ00241 146 EII 148
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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