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Conserved domains on  [gi|496328435|ref|WP_009037613|]
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MULTISPECIES: DUF6078 family protein [Bacteroides]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF6078 super family cl44967
Family of unknown function (DUF6078); This family of proteins is functionally uncharacterized. ...
 1-145 4.33e-58

Family of unknown function (DUF6078); This family of proteins is functionally uncharacterized. This family of proteins is found in Bacteroidetes bacteria. Proteins in this family are approximately 150 amino acids in length. This family contains 4 conserved cysteines towards the N-terminus which may form a zinc-binding motif.


The actual alignment was detected with superfamily member pfam19555:

Pssm-ID: 437387  Cd Length: 145  Bit Score: 177.19  E-value: 4.33e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496328435    1 MKEETFDYSKVPHNFGLCATDTCPYTDTCLRRIAYTYAPSNNIFLYVLNPKAIESTAGKCKYYCSNKKVRYAKGFIHTAE 80
Cdd:pfam19555   1 MNTKFDFYELVPNGYTLCFNDDCPKADTCLRRLAGSHLPASRTTVSVVNPAAAEPGAGKCSFFRPAEKVRYAKGFTRLFA 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 496328435   81 AISVGQSGTFRYRLIGLWGIRRYYQKRKGETLLSPTEQQQVIAIARNLGLQRTEYFDAYVEEYDF 145
Cdd:pfam19555  81 EVPHKDASTVRQRLIGYFGRTYYYRLRRGERLITPEQQERIRALFRRAGIQEEPIFDSYVERYDW 145
 
Name Accession Description Interval E-value
DUF6078 pfam19555
Family of unknown function (DUF6078); This family of proteins is functionally uncharacterized. ...
 1-145 4.33e-58

Family of unknown function (DUF6078); This family of proteins is functionally uncharacterized. This family of proteins is found in Bacteroidetes bacteria. Proteins in this family are approximately 150 amino acids in length. This family contains 4 conserved cysteines towards the N-terminus which may form a zinc-binding motif.


Pssm-ID: 437387  Cd Length: 145  Bit Score: 177.19  E-value: 4.33e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496328435    1 MKEETFDYSKVPHNFGLCATDTCPYTDTCLRRIAYTYAPSNNIFLYVLNPKAIESTAGKCKYYCSNKKVRYAKGFIHTAE 80
Cdd:pfam19555   1 MNTKFDFYELVPNGYTLCFNDDCPKADTCLRRLAGSHLPASRTTVSVVNPAAAEPGAGKCSFFRPAEKVRYAKGFTRLFA 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 496328435   81 AISVGQSGTFRYRLIGLWGIRRYYQKRKGETLLSPTEQQQVIAIARNLGLQRTEYFDAYVEEYDF 145
Cdd:pfam19555  81 EVPHKDASTVRQRLIGYFGRTYYYRLRRGERLITPEQQERIRALFRRAGIQEEPIFDSYVERYDW 145
 
Name Accession Description Interval E-value
DUF6078 pfam19555
Family of unknown function (DUF6078); This family of proteins is functionally uncharacterized. ...
 1-145 4.33e-58

Family of unknown function (DUF6078); This family of proteins is functionally uncharacterized. This family of proteins is found in Bacteroidetes bacteria. Proteins in this family are approximately 150 amino acids in length. This family contains 4 conserved cysteines towards the N-terminus which may form a zinc-binding motif.


Pssm-ID: 437387  Cd Length: 145  Bit Score: 177.19  E-value: 4.33e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496328435    1 MKEETFDYSKVPHNFGLCATDTCPYTDTCLRRIAYTYAPSNNIFLYVLNPKAIESTAGKCKYYCSNKKVRYAKGFIHTAE 80
Cdd:pfam19555   1 MNTKFDFYELVPNGYTLCFNDDCPKADTCLRRLAGSHLPASRTTVSVVNPAAAEPGAGKCSFFRPAEKVRYAKGFTRLFA 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 496328435   81 AISVGQSGTFRYRLIGLWGIRRYYQKRKGETLLSPTEQQQVIAIARNLGLQRTEYFDAYVEEYDF 145
Cdd:pfam19555  81 EVPHKDASTVRQRLIGYFGRTYYYRLRRGERLITPEQQERIRALFRRAGIQEEPIFDSYVERYDW 145
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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