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Conserved domains on  [gi|495966466|ref|WP_008691045|]
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nucleoside 2-deoxyribosyltransferase [Longicatena caecimuris]

Protein Classification

nucleoside 2-deoxyribosyltransferase( domain architecture ID 10007604)

nucleoside 2-deoxyribosyltransferase catalyzes the cleavage of the glycosidic bond of 2'-deoxyribonucleosides and the transfer of the deoxyribosyl moiety to an acceptor purine or pyrimidine base

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RCL COG3613
Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism];
7-148 9.70e-26

Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism];


:

Pssm-ID: 442831  Cd Length: 142  Bit Score: 95.05  E-value: 9.70e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495966466   7 AGSLFNEAEVAQRKKEGEILRATfpQLDIFNPIDQPFNENKQSLP-TPEEIYDGDTKAVEDCDIFIADLT--NEDAGVMV 83
Cdd:COG3613    2 AGPLFSPDERERNERLKALLREH--GFEVFSPQDDQAEEEGLAAEeTAEAIFQADLAAIRRADLVVANLDgaEPDSGTAF 79

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 495966466  84 ELGIAIKSHtKIIIGINSDIRLQSANRydiptYGMNHYVLGAILKHGYFVRSFDEAVETLKTALE 148
Cdd:COG3613   80 EIGYAYALG-KPVIGYTTDDRPLGERG-----LPDNLMLAGSILAVRLVTTDFEDLLAALAEALA 138
 
Name Accession Description Interval E-value
RCL COG3613
Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism];
7-148 9.70e-26

Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism];


Pssm-ID: 442831  Cd Length: 142  Bit Score: 95.05  E-value: 9.70e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495966466   7 AGSLFNEAEVAQRKKEGEILRATfpQLDIFNPIDQPFNENKQSLP-TPEEIYDGDTKAVEDCDIFIADLT--NEDAGVMV 83
Cdd:COG3613    2 AGPLFSPDERERNERLKALLREH--GFEVFSPQDDQAEEEGLAAEeTAEAIFQADLAAIRRADLVVANLDgaEPDSGTAF 79

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 495966466  84 ELGIAIKSHtKIIIGINSDIRLQSANRydiptYGMNHYVLGAILKHGYFVRSFDEAVETLKTALE 148
Cdd:COG3613   80 EIGYAYALG-KPVIGYTTDDRPLGERG-----LPDNLMLAGSILAVRLVTTDFEDLLAALAEALA 138
Nuc_deoxyrib_tr pfam05014
Nucleoside 2-deoxyribosyltransferase; Nucleoside 2-deoxyribosyltransferase EC:2.4.2.6 ...
 4-104 1.22e-12

Nucleoside 2-deoxyribosyltransferase; Nucleoside 2-deoxyribosyltransferase EC:2.4.2.6 catalyzes the cleavage of the glycosidic bonds of 2`-deoxyribonucleosides.


Pssm-ID: 461520  Cd Length: 117  Bit Score: 60.38  E-value: 1.22e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495966466    4 VYVAGSL-FNEAEVAQRKKEGEILRAtFPqLDIFNPIDQPFNENKQSLPTPEEIYDGDTKAVEDCDIFIADLTN--EDAG 80
Cdd:pfam05014   1 IYLAGPLvFLPDAKAYYARLRALLAQ-NG-TDGLYPLEDNEAGLEPAAEWARAIYRADIAGIRAADAVIANLDPfrPDSG 78

                          90       100
                  ....*....|....*....|....
gi 495966466   81 VMVELGIAIKSHtKIIIGINSDIR 104
Cdd:pfam05014  79 TAFELGYAAALG-KPVLGYTTDFR 101
 
Name Accession Description Interval E-value
RCL COG3613
Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism];
7-148 9.70e-26

Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism];


Pssm-ID: 442831  Cd Length: 142  Bit Score: 95.05  E-value: 9.70e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495966466   7 AGSLFNEAEVAQRKKEGEILRATfpQLDIFNPIDQPFNENKQSLP-TPEEIYDGDTKAVEDCDIFIADLT--NEDAGVMV 83
Cdd:COG3613    2 AGPLFSPDERERNERLKALLREH--GFEVFSPQDDQAEEEGLAAEeTAEAIFQADLAAIRRADLVVANLDgaEPDSGTAF 79

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 495966466  84 ELGIAIKSHtKIIIGINSDIRLQSANRydiptYGMNHYVLGAILKHGYFVRSFDEAVETLKTALE 148
Cdd:COG3613   80 EIGYAYALG-KPVIGYTTDDRPLGERG-----LPDNLMLAGSILAVRLVTTDFEDLLAALAEALA 138
Nuc_deoxyrib_tr pfam05014
Nucleoside 2-deoxyribosyltransferase; Nucleoside 2-deoxyribosyltransferase EC:2.4.2.6 ...
 4-104 1.22e-12

Nucleoside 2-deoxyribosyltransferase; Nucleoside 2-deoxyribosyltransferase EC:2.4.2.6 catalyzes the cleavage of the glycosidic bonds of 2`-deoxyribonucleosides.


Pssm-ID: 461520  Cd Length: 117  Bit Score: 60.38  E-value: 1.22e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495966466    4 VYVAGSL-FNEAEVAQRKKEGEILRAtFPqLDIFNPIDQPFNENKQSLPTPEEIYDGDTKAVEDCDIFIADLTN--EDAG 80
Cdd:pfam05014   1 IYLAGPLvFLPDAKAYYARLRALLAQ-NG-TDGLYPLEDNEAGLEPAAEWARAIYRADIAGIRAADAVIANLDPfrPDSG 78

                          90       100
                  ....*....|....*....|....
gi 495966466   81 VMVELGIAIKSHtKIIIGINSDIR 104
Cdd:pfam05014  79 TAFELGYAAALG-KPVLGYTTDFR 101
Nuc_deoxyri_tr2 pfam15891
Nucleoside 2-deoxyribosyltransferase like;
3-96 2.62e-05

Nucleoside 2-deoxyribosyltransferase like;


Pssm-ID: 464926  Cd Length: 105  Bit Score: 40.70  E-value: 2.62e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495966466    3 KVYVAGSLFNEAEVAQRKKEGEILRATFpqLDIFNPIDQPFN---ENKQSLPTPEEIYDGDTKAVEDCDIFIADLTNEDA 79
Cdd:pfam15891   3 SVFLAGSIFSGAETDWREDLAEALSALG--ITVFNPQRDDWDsswEEDRSDPPFREQVEWELEALENADVVVFVFDGATS 80

                          90
                  ....*....|....*....
gi 495966466   80 GV--MVELGIAIKSHTKII 96
Cdd:pfam15891  81 APisLLELGLAAASGKAVV 99
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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