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Conserved domains on  [gi|495964267|ref|WP_008688846|]
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MULTISPECIES: GerMN domain-containing protein [Longicatena]

Protein Classification

GerMN domain-containing protein( domain architecture ID 10566326)

GerMN (Germane) domain-containing protein similar to Bacillus subtilis spore germination protein GerM, a lipoprotein composed of two GerMN domains

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Germane pfam10646
Sporulation and spore germination; The GerMN domain is a region of approximately 100 residues ...
 46-154 8.57e-08

Sporulation and spore germination; The GerMN domain is a region of approximately 100 residues that is found, duplicated, in the Bacillus GerM protein and is implicated in both sporulation and spore germination. The domain is found in a number of different bacterial species both alone and in association with other domains such as Amidase_3 pfam01520, Gmad1 and Gmad2. It is predicted to have a novel alpha-beta fold.


:

Pssm-ID: 463171 [Multi-domain]  Cd Length: 112  Bit Score: 49.72  E-value: 8.57e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495964267   46 QVYLKDHD-HSLVPLSIPVSEEMNEEDKLQLMVSYMSGKQNIKGFLPLFTKECTVKKVMIAN-GKAVMDFDDSLKNYQKE 123
Cdd:pfam10646   1 TLYFLDPDgTKLVPDGRLVPETTDESLAKAALEALLKGPSLDPGLRSALPEGTKLLSVTVKDgGTATVDLSKEFEAGSSA 80

                          90       100       110
                  ....*....|....*....|....*....|.
gi 495964267  124 DELRVLESLTWGATQFHDVEQLEIQLNGVKL 154
Cdd:pfam10646  81 ERELALAQIVNTLTQLPGVKKVQILVDGKPL 111
 
Name Accession Description Interval E-value
Germane pfam10646
Sporulation and spore germination; The GerMN domain is a region of approximately 100 residues ...
 46-154 8.57e-08

Sporulation and spore germination; The GerMN domain is a region of approximately 100 residues that is found, duplicated, in the Bacillus GerM protein and is implicated in both sporulation and spore germination. The domain is found in a number of different bacterial species both alone and in association with other domains such as Amidase_3 pfam01520, Gmad1 and Gmad2. It is predicted to have a novel alpha-beta fold.


Pssm-ID: 463171 [Multi-domain]  Cd Length: 112  Bit Score: 49.72  E-value: 8.57e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495964267   46 QVYLKDHD-HSLVPLSIPVSEEMNEEDKLQLMVSYMSGKQNIKGFLPLFTKECTVKKVMIAN-GKAVMDFDDSLKNYQKE 123
Cdd:pfam10646   1 TLYFLDPDgTKLVPDGRLVPETTDESLAKAALEALLKGPSLDPGLRSALPEGTKLLSVTVKDgGTATVDLSKEFEAGSSA 80

                          90       100       110
                  ....*....|....*....|....*....|.
gi 495964267  124 DELRVLESLTWGATQFHDVEQLEIQLNGVKL 154
Cdd:pfam10646  81 ERELALAQIVNTLTQLPGVKKVQILVDGKPL 111
Germane smart00909
Sporulation and spore germination; The GerMN domain is a region of approximately 100 residues ...
 80-151 1.94e-04

Sporulation and spore germination; The GerMN domain is a region of approximately 100 residues that is found, duplicated, in the Bacillus GerM protein and is implicated in both sporulation and spore germination. The domain is found in a number of different bacterial species both alone and in association with other domains such as Amidase_3 pfam01520 Gmad1 and Gmad2. It is predicted to have a novel alpha-beta fold.


Pssm-ID: 214905 [Multi-domain]  Cd Length: 84  Bit Score: 39.60  E-value: 1.94e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 495964267    80 MSGKQNIKGFLPLFTKECTVKKVMI-ANGKAVMDFDDSLKNYQ--KEDELRVLESLTWGATQFHDVEQLEIQLNG 151
Cdd:smart00909   9 LKGPSPAPGLLSVLPPGTKLLGVSLsGDGTATVDLSSEFGNLSagSEAEQLLLAQLVLTLTEFPGVDKVQILVDG 83
 
Name Accession Description Interval E-value
Germane pfam10646
Sporulation and spore germination; The GerMN domain is a region of approximately 100 residues ...
 46-154 8.57e-08

Sporulation and spore germination; The GerMN domain is a region of approximately 100 residues that is found, duplicated, in the Bacillus GerM protein and is implicated in both sporulation and spore germination. The domain is found in a number of different bacterial species both alone and in association with other domains such as Amidase_3 pfam01520, Gmad1 and Gmad2. It is predicted to have a novel alpha-beta fold.


Pssm-ID: 463171 [Multi-domain]  Cd Length: 112  Bit Score: 49.72  E-value: 8.57e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495964267   46 QVYLKDHD-HSLVPLSIPVSEEMNEEDKLQLMVSYMSGKQNIKGFLPLFTKECTVKKVMIAN-GKAVMDFDDSLKNYQKE 123
Cdd:pfam10646   1 TLYFLDPDgTKLVPDGRLVPETTDESLAKAALEALLKGPSLDPGLRSALPEGTKLLSVTVKDgGTATVDLSKEFEAGSSA 80

                          90       100       110
                  ....*....|....*....|....*....|.
gi 495964267  124 DELRVLESLTWGATQFHDVEQLEIQLNGVKL 154
Cdd:pfam10646  81 ERELALAQIVNTLTQLPGVKKVQILVDGKPL 111
Germane smart00909
Sporulation and spore germination; The GerMN domain is a region of approximately 100 residues ...
 80-151 1.94e-04

Sporulation and spore germination; The GerMN domain is a region of approximately 100 residues that is found, duplicated, in the Bacillus GerM protein and is implicated in both sporulation and spore germination. The domain is found in a number of different bacterial species both alone and in association with other domains such as Amidase_3 pfam01520 Gmad1 and Gmad2. It is predicted to have a novel alpha-beta fold.


Pssm-ID: 214905 [Multi-domain]  Cd Length: 84  Bit Score: 39.60  E-value: 1.94e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 495964267    80 MSGKQNIKGFLPLFTKECTVKKVMI-ANGKAVMDFDDSLKNYQ--KEDELRVLESLTWGATQFHDVEQLEIQLNG 151
Cdd:smart00909   9 LKGPSPAPGLLSVLPPGTKLLGVSLsGDGTATVDLSSEFGNLSagSEAEQLLLAQLVLTLTEFPGVDKVQILVDG 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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