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Conserved domains on  [gi|495621830|ref|WP_008346409|]
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MULTISPECIES: protein YpmT [Bacillus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YpmT super family cl38706
Uncharacterized YmpT-like; This is a family of unknown function found in Bacillus.
 1-62 2.02e-17

Uncharacterized YmpT-like; This is a family of unknown function found in Bacillus.


The actual alignment was detected with superfamily member pfam17431:

Pssm-ID: 407499  Cd Length: 62  Bit Score: 68.02  E-value: 2.02e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 495621830   1 MKRVYQYFSLLSLLFAAYFGMTAASHLKAENIDQFYLNIAYCALFLGTMILAFDFQKQEKAE 62
Cdd:pfam17431  1 MERIYQYFSLLSFLFSLYFGGLAAFHFAAEDMDKMYLNIGYCALFLSIMIFTFDAKDHKKTD 62
 
Name Accession Description Interval E-value
YpmT pfam17431
Uncharacterized YmpT-like; This is a family of unknown function found in Bacillus.
 1-62 2.02e-17

Uncharacterized YmpT-like; This is a family of unknown function found in Bacillus.


Pssm-ID: 407499  Cd Length: 62  Bit Score: 68.02  E-value: 2.02e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 495621830   1 MKRVYQYFSLLSLLFAAYFGMTAASHLKAENIDQFYLNIAYCALFLGTMILAFDFQKQEKAE 62
Cdd:pfam17431  1 MERIYQYFSLLSFLFSLYFGGLAAFHFAAEDMDKMYLNIGYCALFLSIMIFTFDAKDHKKTD 62
 
Name Accession Description Interval E-value
YpmT pfam17431
Uncharacterized YmpT-like; This is a family of unknown function found in Bacillus.
 1-62 2.02e-17

Uncharacterized YmpT-like; This is a family of unknown function found in Bacillus.


Pssm-ID: 407499  Cd Length: 62  Bit Score: 68.02  E-value: 2.02e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 495621830   1 MKRVYQYFSLLSLLFAAYFGMTAASHLKAENIDQFYLNIAYCALFLGTMILAFDFQKQEKAE 62
Cdd:pfam17431  1 MERIYQYFSLLSFLFSLYFGGLAAFHFAAEDMDKMYLNIGYCALFLSIMIFTFDAKDHKKTD 62
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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