NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|495620052|ref|WP_008344631|]
View 

MULTISPECIES: cell division regulator GpsB [Bacillus]

Protein Classification

cell division regulator GpsB( domain architecture ID 10014586)

cell division regulator GpsB, together with EzrA, is a key component of the system that regulates PBP1 localization during cell cycle progression

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PRK14127 PRK14127
cell division regulator GpsB;
3-101 1.85e-50

cell division regulator GpsB;


:

Pssm-ID: 237616 [Multi-domain]  Cd Length: 109  Bit Score: 154.78  E-value: 1.85e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495620052   3 ADKVKLSAKEILEKEFKTGVRGYKQEEVDKFLDMVIKDYETFHQEIEKLQQENLHLSKQLEEAVEQG---------KRQP 73
Cdd:PRK14127   1 MASIKLTPKDILEKEFKTSMRGYDQDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVsvgassssvATTQ 80

                         90       100
                 ....*....|....*....|....*...
gi 495620052  74 AQSNTTNFDILKRLSNLEKHVFGSKLYD 101
Cdd:PRK14127  81 PSSSATNYDILKRLSNLEKHVFGSQLYE 108
 
Name Accession Description Interval E-value
PRK14127 PRK14127
cell division regulator GpsB;
3-101 1.85e-50

cell division regulator GpsB;


Pssm-ID: 237616 [Multi-domain]  Cd Length: 109  Bit Score: 154.78  E-value: 1.85e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495620052   3 ADKVKLSAKEILEKEFKTGVRGYKQEEVDKFLDMVIKDYETFHQEIEKLQQENLHLSKQLEEAVEQG---------KRQP 73
Cdd:PRK14127   1 MASIKLTPKDILEKEFKTSMRGYDQDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVsvgassssvATTQ 80

                         90       100
                 ....*....|....*....|....*...
gi 495620052  74 AQSNTTNFDILKRLSNLEKHVFGSKLYD 101
Cdd:PRK14127  81 PSSSATNYDILKRLSNLEKHVFGSQLYE 108
DivIVA COG3599
Cell division septum initiation protein DivIVA, interacts with FtsZ and MinD [Cell cycle ...
 7-64 2.92e-16

Cell division septum initiation protein DivIVA, interacts with FtsZ and MinD [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442818 [Multi-domain]  Cd Length: 125  Bit Score: 68.34  E-value: 2.92e-16
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 495620052   7 KLSAKEILEKEFKTGVRGYKQEEVDKFLDMVIKDYETFHQEIEKLQQENLHLSKQLEE 64
Cdd:COG3599    2 KLTPLDIRNKEFKKGFRGYDEDEVDEFLDEVAEDYERLIRENKELKEKLEELEEELEE 59
DivI1A_domain TIGR03544
DivIVA domain; This model describes a domain found in Bacillus subtilis cell division ...
 8-41 3.11e-12

DivIVA domain; This model describes a domain found in Bacillus subtilis cell division initiation protein DivIVA, and homologs, toward the N-terminus. It is also found as a repeated domain in certain other proteins, including family TIGR03543.


Pssm-ID: 274639 [Multi-domain]  Cd Length: 34  Bit Score: 55.51  E-value: 3.11e-12
                          10        20        30
                  ....*....|....*....|....*....|....
gi 495620052    8 LSAKEILEKEFKTGVRGYKQEEVDKFLDMVIKDY 41
Cdd:TIGR03544   1 LTPEDIRNKRFKKKLRGYDAAEVDAFLDRVADDL 34
DivIVA pfam05103
DivIVA protein; The Bacillus subtilis divIVA1 mutation causes misplacement of the septum ...
 8-64 6.43e-12

DivIVA protein; The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate mini-cells. Inactivation of divIVA produces a mini-cell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype. These proteins appear to contain coiled-coils.


Pssm-ID: 428304 [Multi-domain]  Cd Length: 131  Bit Score: 57.19  E-value: 6.43e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 495620052    8 LSAKEILEKEFKTGVRGYKQEEVDKFLDMVIKDYETFHQEIEKLQQENLHLSKQLEE 64
Cdd:pfam05103   1 LTPLDIQNKEFKKKMRGYDPDEVDEFLDQVAEDYEALIRENAELKEKIEELEEKLAH 57
 
Name Accession Description Interval E-value
PRK14127 PRK14127
cell division regulator GpsB;
3-101 1.85e-50

cell division regulator GpsB;


Pssm-ID: 237616 [Multi-domain]  Cd Length: 109  Bit Score: 154.78  E-value: 1.85e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495620052   3 ADKVKLSAKEILEKEFKTGVRGYKQEEVDKFLDMVIKDYETFHQEIEKLQQENLHLSKQLEEAVEQG---------KRQP 73
Cdd:PRK14127   1 MASIKLTPKDILEKEFKTSMRGYDQDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVsvgassssvATTQ 80

                         90       100
                 ....*....|....*....|....*...
gi 495620052  74 AQSNTTNFDILKRLSNLEKHVFGSKLYD 101
Cdd:PRK14127  81 PSSSATNYDILKRLSNLEKHVFGSQLYE 108
DivIVA COG3599
Cell division septum initiation protein DivIVA, interacts with FtsZ and MinD [Cell cycle ...
 7-64 2.92e-16

Cell division septum initiation protein DivIVA, interacts with FtsZ and MinD [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442818 [Multi-domain]  Cd Length: 125  Bit Score: 68.34  E-value: 2.92e-16
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 495620052   7 KLSAKEILEKEFKTGVRGYKQEEVDKFLDMVIKDYETFHQEIEKLQQENLHLSKQLEE 64
Cdd:COG3599    2 KLTPLDIRNKEFKKGFRGYDEDEVDEFLDEVAEDYERLIRENKELKEKLEELEEELEE 59
DivI1A_domain TIGR03544
DivIVA domain; This model describes a domain found in Bacillus subtilis cell division ...
 8-41 3.11e-12

DivIVA domain; This model describes a domain found in Bacillus subtilis cell division initiation protein DivIVA, and homologs, toward the N-terminus. It is also found as a repeated domain in certain other proteins, including family TIGR03543.


Pssm-ID: 274639 [Multi-domain]  Cd Length: 34  Bit Score: 55.51  E-value: 3.11e-12
                          10        20        30
                  ....*....|....*....|....*....|....
gi 495620052    8 LSAKEILEKEFKTGVRGYKQEEVDKFLDMVIKDY 41
Cdd:TIGR03544   1 LTPEDIRNKRFKKKLRGYDAAEVDAFLDRVADDL 34
DivIVA pfam05103
DivIVA protein; The Bacillus subtilis divIVA1 mutation causes misplacement of the septum ...
 8-64 6.43e-12

DivIVA protein; The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate mini-cells. Inactivation of divIVA produces a mini-cell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype. These proteins appear to contain coiled-coils.


Pssm-ID: 428304 [Multi-domain]  Cd Length: 131  Bit Score: 57.19  E-value: 6.43e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 495620052    8 LSAKEILEKEFKTGVRGYKQEEVDKFLDMVIKDYETFHQEIEKLQQENLHLSKQLEE 64
Cdd:pfam05103   1 LTPLDIQNKEFKKKMRGYDPDEVDEFLDQVAEDYEALIRENAELKEKIEELEEKLAH 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH