|
Name |
Accession |
Description |
Interval |
E-value |
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
38-302 |
1.95e-22 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 96.34 E-value: 1.95e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 38 QAAQLYYDWGDIDKARNLISDLHDLYPEETGLTCFYAELLIDSDEEEKAIAVLETIPEDDDAYPESLLLMADLYQMQGLF 117
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 118 EVSEQKLLKAKELLPHEAVIDFALGELYFSQGLSKKAADYFYKVANQQNEigGVNVYQRLAESLSTAGEFEDALEWYEKA 197
Cdd:COG2956 93 DRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPE--NAHAYCELAELYLEQGDYDEAIEALEKA 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 198 VK-DQVDPNTLFGYGFTAMRAGRTKTAIQQLSELKDIDPSYSSLYMPLAKSYEEEGLYHEALEIVKEGIKVDEYNkELYL 276
Cdd:COG2956 171 LKlDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSD-DLLL 249
|
250 260
....*....|....*....|....*.
gi 495619981 277 YGAKIDLKNGHSEDAKKLLQEALALD 302
Cdd:COG2956 250 ALADLLERKEGLEAALALLERQLRRH 275
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
139-404 |
4.11e-22 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 95.18 E-value: 4.11e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 139 FALGELYFSQGLSKKAADYFYKVANQQNEIggVNVYQRLAESLSTAGEFEDALEWYEKAVK-DQVDPNTLFGYGFTAMRA 217
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPET--VEAHLALGNLYRRRGEYDRAIRIHQKLLErDPDRAEALLELAQDYLKA 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 218 GRTKTAIQQLSELKDIDPSYSSLYMPLAKSYEEEGLYHEALEIVKEGIKVDEYNKELYLYGAKIDLKNGHSEDAKKLLQE 297
Cdd:COG2956 90 GLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEK 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 298 ALALDPGYIEAVQTLLAIYLNEELFDEILDVIKEVKSFGEEDPKWNWYAASASVGREEYDEAAEYFKLALpDFDEERDFL 377
Cdd:COG2956 170 ALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKAL-ELDPSDDLL 248
|
250 260
....*....|....*....|....*..
gi 495619981 378 YEYASFLLEEGRQKEALPLLRKVLQKD 404
Cdd:COG2956 249 LALADLLERKEGLEAALALLERQLRRH 275
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
74-367 |
4.76e-22 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 95.18 E-value: 4.76e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 74 AELLIDSDEEEKAIAVLETIPEDDDAYPESLLLMADLYQMQGLFEVSEQKLLKAKELLPHEAVIDFALGELYFSQGLSKK 153
Cdd:COG2956 15 GLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 154 AADYFYKVANQqnEIGGVNVYQRLAESLSTAGEFEDALEWYEKAVKdqvdpntlfgygftamragrtktaiqqlselkdI 233
Cdd:COG2956 95 AEELLEKLLEL--DPDDAEALRLLAEIYEQEGDWEKAIEVLERLLK---------------------------------L 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 234 DPSYSSLYMPLAKSYEEEGLYHEALEIVKEGIKVDEYNKELYLYGAKIDLKNGHSEDAKKLLQEALALDPGYIEAVQTLL 313
Cdd:COG2956 140 GPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLA 219
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 495619981 314 AIYLNEELFDEILDVIKEVKSFGEEDPKWNWYAASAsVGREEYDEAAEYFKLAL 367
Cdd:COG2956 220 ELYEKLGDPEEALELLRKALELDPSDDLLLALADLL-ERKEGLEAALALLERQL 272
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
211-417 |
1.43e-18 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 85.17 E-value: 1.43e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 211 GFTAMRAGRTKTAIQQLSELKDIDPSYSSLYMPLAKSYEEEGLYHEALEIVKEGIKVDEYNKELYLYGAKIDLKNGHSED 290
Cdd:COG2956 15 GLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 291 AKKLLQEALALDPGYIEAVQTLLAIYLNEELFDEILDVIKEVKSFGEEDPKWNWYAASASVGREEYDEAAEYFKLALPDF 370
Cdd:COG2956 95 AEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLD 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 495619981 371 DEERDFLYEYASFLLEEGRQKEALPLLRKVLQKDGTNEEIEETILRI 417
Cdd:COG2956 175 PDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAEL 221
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
15-230 |
4.16e-15 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 75.15 E-value: 4.16e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 15 GETEKGLQTLAQAEKHLHDEEKAQA--AQLYYDWGDIDKARNLISDLHDLYPEETGLTCFYAELLIDSDEEEKAIAVLET 92
Cdd:COG2956 56 GEYDRAIRIHQKLLERDPDRAEALLelAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLER 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 93 IPEDDDAYPESLLLMADLYQMQGLFEVSEQKLLKAKELLPHEAVIDFALGELYFSQGLSKKAADYFYKVANQQNEIggVN 172
Cdd:COG2956 136 LLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDY--LP 213
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 495619981 173 VYQRLAESLSTAGEFEDALEWYEKAVKDQVDPNTLFGYGFTAMRAGRTKTAIQQLSEL 230
Cdd:COG2956 214 ALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQ 271
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
172-342 |
4.49e-15 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 77.34 E-value: 4.49e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 172 NVYQRLAESLSTAGEFEDALEWYEKAVkdQVDPN---TLFGYGFTAMRAGRTKTAIQQLSELKDIDPSYSSLYMPLAKSY 248
Cdd:COG3914 79 ALLELAALLLQALGRYEEALALYRRAL--ALNPDnaeALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEAL 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 249 EEEGLYHEALEIVKEGIKVDEYNKELYLYGAKIDLKNGHSEDAKKLLQEALALDPGYIEAVQTLLAIYLNEELFDEILDV 328
Cdd:COG3914 157 RRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRF 236
|
170
....*....|....
gi 495619981 329 IKEVKSFGEEDPKW 342
Cdd:COG3914 237 EELLAALARGPSEL 250
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
171-399 |
7.91e-15 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 73.89 E-value: 7.91e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 171 VNVYQRLAESLSTAGEFEDALEWYEKAVK-DQVDPNTLFGYGFTAMRAGRTKTAIQQLSELKDIDPSYSSLYMPLAKSYE 249
Cdd:COG0457 8 AEAYNNLGLAYRRLGRYEEAIEDYEKALElDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQ 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 250 EEGLYHEALEIVKEGIKVDEYNKELYLYGAKIDLKNGHSEDAKKLLQEALALDPGYIEAVQTLLAIYLNEELFDEILDVI 329
Cdd:COG0457 88 ALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELL 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 330 KEVKSFGEEDPKWNWYAASASVGREEYDEAAEYFKLALPDFDEERDFLYEYASFLLEEGRQKEALPLLRK 399
Cdd:COG0457 168 EKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAA 237
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
95-327 |
1.61e-13 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 70.04 E-value: 1.61e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 95 EDDDAYPESLLLMADLYQMQGLFEVSEQKLLKAKELLPHEAVIDFALGELYFSQGLSKKAADYFYKVANQQNEIggVNVY 174
Cdd:COG0457 2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD--AEAL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 175 QRLAESLSTAGEFEDALEWYEKAVK-DQVDPNTLFGYGFTAMRAGRTKTAIQQLSELKDIDPSYSSLYMPLAKSYEEEGL 253
Cdd:COG0457 80 NNLGLALQALGRYEEALEDYDKALElDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGR 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 495619981 254 YHEALEIVKEGIKVDEYNKELYLYGAKIDLKNGHSEDAKKLLQEALALDPGYIEAVQTLLAIYLNEELFDEILD 327
Cdd:COG0457 160 YEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLAL 233
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
9-407 |
4.11e-13 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 71.27 E-value: 4.11e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 9 IKLVEAGETEKGLQTLAQAEKHLHDE--EKAQAAQLYYDWGDIDKArnlISDLHD---LYPEETGLTCFYAELLIDSDEE 83
Cdd:TIGR02917 371 EAYLALGDFEKAAEYLAKATELDPENaaARTQLGISKLSQGDPSEA---IADLETaaqLDPELGRADLLLILSYLRSGQF 447
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 84 EKAIAVLETIPEDDDAYPESLLLMADLYQMQGLFEVSEQKLLKAKELLPHEAVIDFALGELYFSQGLSKKAADYFYKV-- 161
Cdd:TIGR02917 448 DKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVlt 527
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 162 ANQQNeiggVNVYQRLAESLSTAGEFEDALEWYEKAV-KDQVDPNTLFGYGFTAMRAGRTKTAIQQLSELKDIDPSYSSL 240
Cdd:TIGR02917 528 IDPKN----LRAILALAGLYLRTGNEEEAVAWLEKAAeLNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEA 603
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 241 YMPLAKSYEEEGLYHEALEIVKEGIKVDEYNKELYLYGAKIDLKNGHSEDAKKLLQEALALDPGYIEAVQTLLAIYLNEE 320
Cdd:TIGR02917 604 WLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAK 683
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 321 LFDEILDVIKEVKSFGEEDPKWNWYAASASVGREEYDEAAEYFKLALpDFDEERDFLYEYASFLLEEGRQKEALPLLRKV 400
Cdd:TIGR02917 684 RTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKAL-KRAPSSQNAIKLHRALLASGNTAEAVKTLEAW 762
|
....*..
gi 495619981 401 LQKDGTN 407
Cdd:TIGR02917 763 LKTHPND 769
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
129-373 |
1.00e-11 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 64.64 E-value: 1.00e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 129 ELLPHEAVIDFALGELYFSQGLSKKAADYFYKVANQQNEIggVNVYQRLAESLSTAGEFEDALEWYEKAVK-DQVDPNTL 207
Cdd:COG0457 2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDD--AEALYNLGLAYLRLGRYEEALADYEQALElDPDDAEAL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 208 FGYGFTAMRAGRTKTAIQQLSELKDIDPSYSSLYMPLAKSYEEEGLYHEALEIVKEGIKVDEYNKELYLYGAKIDLKNGH 287
Cdd:COG0457 80 NNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGR 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 288 SEDAKKLLQEALALDPGYIEAVQTLLAIYLNEELFDEILDVIKEVKSFGEEDPKWNWYAASASVGREEYDEAAEYFKLAL 367
Cdd:COG0457 160 YEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALA 239
|
....*.
gi 495619981 368 PDFDEE 373
Cdd:COG0457 240 LYQYRA 245
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
15-407 |
1.10e-11 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 67.03 E-value: 1.10e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 15 GETEKGLQTLAQAEKHLHD--EEKAQAAQLYYDWGDIDKARNLISDLHDLYPEETGLTCFYAELLIDSDEEEKAIAVLET 92
Cdd:TIGR02917 139 GQLELAQKSYEQALAIDPRslYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRK 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 93 IPEDDDAYPESLLLMADLYQMQGLFEVSEQKLLKAKELLPHEAVIDFALGELYFSQGLSKKAADYFYKVANQQNE----- 167
Cdd:TIGR02917 219 AIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEylpal 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 168 -IGGVNVYQRlaeslstaGEFEDALEWYEKAVKdqVDPNTLFGYGFTAM---RAGRTKTAIQQLSELKDIDPSYSSLYMP 243
Cdd:TIGR02917 299 lLAGASEYQL--------GNLEQAYQYLNQILK--YAPNSHQARRLLASiqlRLGRVDEAIATLSPALGLDPDDPAALSL 368
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 244 LAKSYEEEGLYHEALEIVKEGIKVDEYNKELYLYGAKIDLKNGHSEDAKKLLQEALALDPGYIEAVQTLLAIYLNEELFD 323
Cdd:TIGR02917 369 LGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFD 448
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 324 EILDVIKEVKSFGEEDPKWNWYAASASVGREEYDEAAEYFKLAL---PDFDEERDFLYEYAsflLEEGRQKEALPLLRKV 400
Cdd:TIGR02917 449 KALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALsiePDFFPAAANLARID---IQEGNPDDAIQRFEKV 525
|
....*..
gi 495619981 401 LQKDGTN 407
Cdd:TIGR02917 526 LTIDPKN 532
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
86-407 |
3.96e-11 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 65.10 E-value: 3.96e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 86 AIAVLETIPEDDDAYPESLLLMADLYQMQGLFEVSEQKLLKAKELLPHEAVIDFALGELYFSQGLSKKAADYFYKVANQQ 165
Cdd:TIGR02917 41 AIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLD 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 166 NEIGGV-NVYQRLAESLStaGEFEDALEWYEKA-VKDQVDPNTLFGYGFTAMRAGRTKTAIQQLSELKDIDPSYSSLYMP 243
Cdd:TIGR02917 121 DEGAAElLALRGLAYLGL--GQLELAQKSYEQAlAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLL 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 244 LAKSYEEEGLYHEALEIVKEGIKVDEYNKELYLYGAKIDLKNGHSEDAKKLLQEALALDPGYIEAVQTLLAIYLNEELFD 323
Cdd:TIGR02917 199 KGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYE 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 324 EILDVIKEVKSFGEEDPKWNWYAASASVGREEYDEAAEYFK---LALPDFDEERDFLyeyASFLLEEGRQKEALPLLRKV 400
Cdd:TIGR02917 279 DARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNqilKYAPNSHQARRLL---ASIQLRLGRVDEAIATLSPA 355
|
....*..
gi 495619981 401 LQKDGTN 407
Cdd:TIGR02917 356 LGLDPDD 362
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
173-305 |
1.02e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 59.44 E-value: 1.02e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 173 VYQRLAESLSTAGEFEDALEWYEKAVK-DQVDPNTLFGYGFTAMRAGRTKTAIQQLSELKDIDPSYSSLYMPLAKSYEEE 251
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALElDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 495619981 252 GLYHEALEIVKEGIKVDEYNKELYLYGAKIDLKNGHSEDAKKLLQEALALDPGY 305
Cdd:COG4783 86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
13-201 |
1.24e-10 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 61.67 E-value: 1.24e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 13 EAGETEKGLQTLAQAEKHLHDEEKAQA--AQLYYDWGDIDKARNLISDLHDLYPEETGLTCFYAELLIDSDEEEKAIAVL 90
Cdd:COG2956 88 KAGLLDRAEELLEKLLELDPDDAEALRllAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEAL 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 91 ETIPEDDDAYPESLLLMADLYQMQGLFEVSEQKLLKAKELLPHEAVIDFALGELYFSQGLSKKAADYFYKVANQQNeigG 170
Cdd:COG2956 168 EKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDP---S 244
|
170 180 190
....*....|....*....|....*....|.
gi 495619981 171 VNVYQRLAESLSTAGEFEDALEWYEKAVKDQ 201
Cdd:COG2956 245 DDLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
40-410 |
2.66e-10 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 62.41 E-value: 2.66e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 40 AQLYYDWGDIDKARNLISDLHDLYPEETGLTCFYAELLIDSDEEEKAIAVLETIPEDDDAYPESLLLMADLYQMQGLFEV 119
Cdd:TIGR02917 506 ARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKK 585
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 120 SEQKLLKAKELLPHEAVIDFALGELYFSQGLSKKAADYFYKVANQQNEIGgvNVYQRLAESLSTAGEFEDALEWYEKAVK 199
Cdd:TIGR02917 586 ALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSA--LALLLLADAYAVMKNYAKAITSLKRALE 663
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 200 DQVDPNTL-FGYGFTAMRAGRTKTAIQQLSELKDIDPSYSSLYMPLAKSYEEEGLYHEALEIVKEGIKVdEYNKELYLYG 278
Cdd:TIGR02917 664 LKPDNTEAqIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR-APSSQNAIKL 742
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 279 AKIDLKNGHSEDAKKLLQEALALDPGYIeAVQTLLA-IYLNEELFDEildVIKEVKSFGEEDPKwnwYAAS----ASVGR 353
Cdd:TIGR02917 743 HRALLASGNTAEAVKTLEAWLKTHPNDA-VLRTALAeLYLAQKDYDK---AIKHYQTVVKKAPD---NAVVlnnlAWLYL 815
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 495619981 354 EEYD-EAAEYFKLALPDFDEERDFLYEYASFLLEEGRQKEALPLLRKVLQKDGTNEEI 410
Cdd:TIGR02917 816 ELKDpRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAI 873
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
232-421 |
8.84e-10 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 58.86 E-value: 8.84e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 232 DIDPSYSSLYMPLAKSYEEEGLYHEALEIVKEGIKVDEYNKELYLYGAKIDLKNGHSEDAKKLLQEALALDPGYIEAVQT 311
Cdd:COG0457 2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 312 LLAIYLNEELFDEILDVIKEVKSFGEEDPKWNWYAASASVGREEYDEAAEYFKLALPDFDEERDFLYEYASFLLEEGRQK 391
Cdd:COG0457 82 LGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYE 161
|
170 180 190
....*....|....*....|....*....|
gi 495619981 392 EALPLLRKVLQKDGTNEEIEETILRIEDEI 421
Cdd:COG0457 162 EALELLEKLEAAALAALLAAALGEAALALA 191
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
207-331 |
1.41e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 55.97 E-value: 1.41e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 207 LFGYGFTAMRAGRTKTAIQQLSELKDIDPSYSSLYMPLAKSYEEEGLYHEALEIVKEGIKVDEYNKELYLYGAKIDLKNG 286
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG 86
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 495619981 287 HSEDAKKLLQEALALDPGYIEAVQTLLAIYLNEELFDEILDVIKE 331
Cdd:COG4783 87 DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEK 131
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
244-367 |
2.80e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 55.20 E-value: 2.80e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 244 LAKSYEEEGLYHEALEIVKEGIKVDEYNKELYLYGAKIDLKNGHSEDAKKLLQEALALDPGYIEAVQTLLAIYLNEELFD 323
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYD 89
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 495619981 324 EILDVIKEVKSFGEEDPKWNWYAASASVGREEYDEAAEYFKLAL 367
Cdd:COG4783 90 EALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKAL 133
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
203-420 |
5.11e-09 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 56.55 E-value: 5.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 203 DPNTLFGYGFTAMRAGRTKTAIQQLSELKDIDPSYSSLYMPLAKSYEEEGLYHEALEIVKEGIKVDEYNKELYLYGAKID 282
Cdd:COG0457 7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLAL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 283 LKNGHSEDAKKLLQEALALDPGYIEAVQTLLAIYLNEELFDEILDVIKEVKSFGEEDPKWNWYAASASVGREEYDEAAEY 362
Cdd:COG0457 87 QALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALEL 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 495619981 363 FKLALPDFDEERDFLYEYASFLLEEGRQKEALPLLRKVLQKDGTNEEIEETILRIEDE 420
Cdd:COG0457 167 LEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLL 224
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
5-134 |
1.25e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 53.27 E-value: 1.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 5 LQEAIKLVEAGETEKGLQTLAQAEKHLHDEEKAQA--AQLYYDWGDIDKARNLISDLHDLYPEETGLTCFYAELLIDSDE 82
Cdd:COG4783 8 YALAQALLLAGDYDEAEALLEKALELDPDNPEAFAllGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGD 87
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 495619981 83 EEKAIAVLETIPEDDDAYPESLLLMADLYQMQGLFEVSEQKLLKAKELLPHE 134
Cdd:COG4783 88 YDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
34-167 |
1.60e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 52.89 E-value: 1.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 34 EEKAQAAQLYYDWGDIDKARNLISDLHDLYPEETGLTCFYAELLIDSDEEEKAIAVLETIPEDDDAYPESLLLMADLYQM 113
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 495619981 114 QGLFEVSEQKLLKAKELLPHEAVIDFALGELYFSQGLSKKAADYFYKVANQQNE 167
Cdd:COG4783 85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
279-407 |
1.65e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 52.89 E-value: 1.65e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 279 AKIDLKNGHSEDAKKLLQEALALDPGYIEAVQTLLAIYLNEELFDEILDVIKEVKSFGEEDPKWNWYAASASVGREEYDE 358
Cdd:COG4783 11 AQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDE 90
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 495619981 359 AAEYFKLALPDFDEERDFLYEYASFLLEEGRQKEALPLLRKVLQKDGTN 407
Cdd:COG4783 91 ALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
248-410 |
2.71e-08 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 55.77 E-value: 2.71e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 248 YEEEGLYHEALEIVKEGIKVDEYNKELYLYGAKIDLKNGHSEDAKKLLQEALALDPGYIEAVQTLLAIYLNEELFDEILD 327
Cdd:COG3914 54 AAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALA 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 328 VIKEVKSFGEEDPKWNWYAASASVGREEYDEAAEYFKLALPDFDEERDFLYEYASFLLEEGRQKEALPLLRKVLQKDGTN 407
Cdd:COG3914 134 ALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDN 213
|
...
gi 495619981 408 EEI 410
Cdd:COG3914 214 ADA 216
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
171-282 |
8.06e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 50.77 E-value: 8.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 171 VNVYQRLAESLSTAGEFEDALEWYEKAVK-DQVDPNTLFGYGFTAMRAGRTKTAIQQLSELKDIDPSYSSLYMPLAKSYE 249
Cdd:COG4235 17 AEGWLLLGRAYLRLGRYDEALAAYEKALRlDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAF 96
|
90 100 110
....*....|....*....|....*....|...
gi 495619981 250 EEGLYHEALEIVKEGIKVDEYNKELYLYGAKID 282
Cdd:COG4235 97 QQGDYAEAIAAWQKLLALLPADAPARLLEASIA 129
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
135-268 |
9.63e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 50.96 E-value: 9.63e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 135 AVIDFALGELYFSQGLSKKAADYFYKVANQQNEigGVNVYQRLAESLSTAGEFEDALEWYEKAVK-DQVDPNTLFGYGFT 213
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPD--NPEAFALLGEILLQLGDLDEAIVLLHEALElDPDEPEARLNLGLA 81
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 495619981 214 AMRAGRTKTAIQQLSELKDIDPSYSSLYMPLAKSYEEEGLYHEALEIVKEGIKVD 268
Cdd:COG4783 82 LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
97-367 |
1.68e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 53.55 E-value: 1.68e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 97 DDAYPESLLLMADLYQMQGLFEVSEQKLLKAKELLPHEAVIDFALGELYFSQGLSKKAADYFYKVANQQNEIGGVNVYqr 176
Cdd:TIGR02917 18 GDQSPEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPL-- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 177 LAESLSTAGEFEDALEWYEKaVKDQVDPNT--LFGY-GFTAMRAGRTKTAIQQLSELKDIDPSYSSLYMPLAKSYEEEGL 253
Cdd:TIGR02917 96 LARAYLLQGKFQQVLDELPG-KTLLDDEGAaeLLALrGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENR 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 254 YHEALEIVKEGIKVDEYNKELYLYGAKIDLKNGHSEDAKKLLQEALALDPGYIEAVQTLLAIYLNEELFDEILDVIKEVK 333
Cdd:TIGR02917 175 FDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALL 254
|
250 260 270
....*....|....*....|....*....|....
gi 495619981 334 SFGEEDPKWNWYAASASVGREEYDEAAEYFKLAL 367
Cdd:TIGR02917 255 KKAPNSPLAHYLKALVDFQKKNYEDARETLQDAL 288
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
189-310 |
1.83e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 49.62 E-value: 1.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 189 DALEWYEKAVKDQV-DPNTLFGYGFTAMRAGRTKTAIQQLSELKDIDPSYSSLYMPLAKSYEEEGLYHEALEIVKEGIKV 267
Cdd:COG4235 1 EAIARLRQALAANPnDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 495619981 268 DEYNKELYLYGAKIDLKNGHSEDAKKLLQEALALDPGYIEAVQ 310
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARL 123
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
176-299 |
2.12e-07 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 51.81 E-value: 2.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 176 RLAESLSTAGEFEDALEWYEKAVKD--QVDPNTLFGYGFTAMRAGRTKTAIQQLSELKDIDPSYSS-----LYmplAKSY 248
Cdd:COG4700 94 RLADALLELGRYDEAIELYEEALTGifADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDFKSsdahlLY---ARAL 170
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 495619981 249 EEEGLYHEALEIVKegiKVDEYN---KELYLYgAKIDLKNGHSEDAKKLLQEAL 299
Cdd:COG4700 171 EALGDLEAAEAELE---ALARRYsgpEARYRY-AKFLARQGRTAEAKELLEEIL 220
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
40-197 |
6.55e-07 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 50.39 E-value: 6.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 40 AQLYYDWGDIDKARNLISDLHDLYPEETGLTCFYAELLIDSDEEEKAIAVLETIPEDDDAYPESLLLMADLYQMQGLFEV 119
Cdd:COG0457 15 GLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEE 94
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 495619981 120 SEQKLLKAKELLPHEAVIDFALGELYFSQGLSKKAADYFYKVAnqQNEIGGVNVYQRLAESLSTAGEFEDALEWYEKA 197
Cdd:COG0457 95 ALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERAL--ELDPDDADALYNLGIALEKLGRYEEALELLEKL 170
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
223-342 |
1.84e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 46.92 E-value: 1.84e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 223 AIQQLSELKDIDPSYSSLYMPLAKSYEEEGLYHEALEIVKEGIKVDEYNKELYLYGAKIDLKNGHSEDAKKLLQEALALD 302
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 495619981 303 PGYIEAVQTLLAIYLNEELFDEILDVIKEVKSFGEEDPKW 342
Cdd:COG4235 82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPA 121
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
265-410 |
2.28e-06 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 48.46 E-value: 2.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 265 IKVDEYNKELYLYGAKIDLKNGHSEDAKKLLQEALALDPGYIEAVQTLLAIYLNEELFDEILDVIKEVKSFGEEDPKWNW 344
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 495619981 345 YAASASVGREEYDEAAEYFKLALPDFDEERDFLYEYASFLLEEGRQKEALPLLRKVLQKDGTNEEI 410
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADA 146
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
11-199 |
4.13e-06 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 48.37 E-value: 4.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 11 LVEAGETEKGLQTLAQAEKH--LHDEEKAQAAQLYYDwGDIDKARNLISDLHDLYPE-------ETGLTCFYAELLIDSD 81
Cdd:COG3071 129 YRQLGDWEELLELLPALRKHkaLSAEEAQALERRAYL-GLLRQAARDAEALKALWKAlpraerrDPELAAAYARALIALG 207
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 82 EEEKAIAVLET-IPEDDDayPESLLLMADLyqMQGLFEVSEQKLLKAKELLPHEAVIDFALGELYFSQGLSKKAADYFYK 160
Cdd:COG3071 208 DHDEAERLLREaLKRQWD--PRLVRLYGRL--QGGDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEA 283
|
170 180 190
....*....|....*....|....*....|....*....
gi 495619981 161 VANQQNeigGVNVYQRLAESLSTAGEFEDALEWYEKAVK 199
Cdd:COG3071 284 ALALRP---SAEAYAELARLLEQLGDPEEAAEHYRKALA 319
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
14-304 |
8.07e-06 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 47.60 E-value: 8.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 14 AGETEKGLQTLA-----QAEKHL-----HDEEK-------AQAAQLYydwGDIDKARNLISDLHDLYPE---ETGLTcfY 73
Cdd:COG3071 17 LAALLEGLLALAegryaRAEKLLskaaeHSEAPllayllaARAAQAL---GDYERRDEYLAQALELAPEaelAVLLT--R 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 74 AELLIDSDEEEKAIAVLETIPEDDDAYPESLLLMADLYQMQG----LFEVSEQkLLKAKELLPHEAVidfALGELYFSQG 149
Cdd:COG3071 92 AELLLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGdweeLLELLPA-LRKHKALSAEEAQ---ALERRAYLGL 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 150 LSKKAADY--FYKVANQQ--NEIGGVNVYQRLAESLSTAGEFEDALEWYEKAVKDQVDPNTLFGYGftAMRAGRTKTAIQ 225
Cdd:COG3071 168 LRQAARDAeaLKALWKALprAERRDPELAAAYARALIALGDHDEAERLLREALKRQWDPRLVRLYG--RLQGGDPAKQLK 245
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 495619981 226 QLSELKDIDPSYSSLYMPLAKSYEEEGLYHEALEIVKEGIKVDEyNKELYLYGAKIDLKNGHSEDAKKLLQEALALDPG 304
Cdd:COG3071 246 RAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRP-SAEAYAELARLLEQLGDPEEAAEHYRKALALALG 323
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
162-367 |
8.81e-06 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 48.06 E-value: 8.81e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 162 ANQQNEIGGVNVYQRLAESlSTAGEFEDALEWYEKAV-KDQVDPNTLFGYGFTAM---RAGRTKTAIQQLSELKDIDPSY 237
Cdd:TIGR00990 286 LDEETGNGQLQLGLKSPES-KADESYEEAARAFEKALdLGKLGEKEAIALNLRGTfkcLKGKHLEALADLSKSIELDPRV 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 238 SSLYMPLAKSYEEEGLYHEALEIVKEGIKVDEYNKELYLYGAKIDLKNGHSEDAKKLLQEALALDPGYIEAVQTLLAIYL 317
Cdd:TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY 444
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 495619981 318 NEELFDEILDVIKEVKSFGEEDPKWNWYAASASVGREEYDEAAEYFKLAL 367
Cdd:TIGR00990 445 KEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAI 494
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
11-232 |
2.57e-05 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 45.38 E-value: 2.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 11 LVEAGETEKGLQTLAQAEKHLHDEEKAQA--AQLYYDWGDIDKARNLISDLHDLYPEETGLTCFYAELLIDSDEEEKAIA 88
Cdd:COG0457 18 YRRLGRYEEAIEDYEKALELDPDDAEALYnlGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 89 VLETIPEDDDAYPESLLLMADLYQMQGLFEVSEQKLLKAKELLPHEAVIDFALGELYFSQGLSKKAADYFYKVANQQNEI 168
Cdd:COG0457 98 DYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAA 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 495619981 169 GGVNVYQRLAESLSTAGEFEDALEWYEKAVKDQVDPNTLFGYGFTAMRAGRTKTAIQQLSELKD 232
Cdd:COG0457 178 LLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALY 241
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
22-135 |
3.06e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 43.46 E-value: 3.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 22 QTLAQAEKHLHDE-EKAQA----AQLYYDWGDIDKARNLISDLHDLYPEETGLTCFYAELLIDSDEEEKAIAVLETIPED 96
Cdd:COG4235 1 EAIARLRQALAANpNDAEGwlllGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110
....*....|....*....|....*....|....*....
gi 495619981 97 DDAYPESLLLMADLYQMQGLFEVSEQKLLKAKELLPHEA 135
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADA 119
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
214-303 |
4.87e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 42.08 E-value: 4.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 214 AMRAGRTKTAIQQLSELKDIDPSYSSLYMPLAKSYEEEGLYHEALEIvKEGIKVDEYNKELYLYGAKIDLKNGHSEDAKK 293
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|
gi 495619981 294 LLQEALALDP 303
Cdd:COG3063 81 YLERALELDP 90
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
85-199 |
4.91e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 42.69 E-value: 4.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 85 KAIAVLETIPEDDDAYPESLLLMADLYQMQGLFEVSEQKLLKAKELLPHEAVIDFALGELYFSQGLSKKAADYFYKVANQ 164
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110
....*....|....*....|....*....|....*
gi 495619981 165 QNEigGVNVYQRLAESLSTAGEFEDALEWYEKAVK 199
Cdd:COG4235 81 DPD--NPEALYLLGLAAFQQGDYAEAIAAWQKLLA 113
|
|
| TPR_hemY_coli |
TIGR00540 |
heme biosynthesis-associated TPR protein; Members of this protein family are uncharacterized ... |
12-197 |
5.03e-05 |
|
heme biosynthesis-associated TPR protein; Members of this protein family are uncharacterized tetratricopeptide repeat (TPR) proteins invariably found in heme biosynthesis gene clusters. The absence of any invariant residues other than Ala argues against this protein serving as an enzyme per se. The gene symbol hemY assigned in E. coli is unfortunate in that an unrelated protein, protoporphyrinogen oxidase (HemG in E. coli) is designated HemY in Bacillus subtilis. [Unknown function, General]
Pssm-ID: 273126 [Multi-domain] Cd Length: 367 Bit Score: 44.97 E-value: 5.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 12 VEAGETEKGLQTLAQAEKH--LHDEEKAQAAQLYYDwGDIDKARN-----LISDLHDLYPEETG---LTCFYAELLIDSD 81
Cdd:TIGR00540 179 QRSGNWDALLKLLPALRKAkaLSPEEAARLEQQAYI-GLLDEAREedadaLKTWWKQLPRAERQepeLAVAAAEALIQLG 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 82 EEEKAIAVLETIpEDDDAYPESLLLMADLyqmqGLFEVSEQ--KLLKAKELLPHEAVIDFALGELYFSQGLSKKAADYFY 159
Cdd:TIGR00540 258 DHDEAEKLIEEA-LKKEWDPELLRLYGRL----QPGDPSPLikRAEKWLKKHPDDALLLLALGRLCLRQQLWGKAQSYLE 332
|
170 180 190
....*....|....*....|....*....|....*...
gi 495619981 160 KVANQQNeigGVNVYQRLAESLSTAGEFEDALEWYEKA 197
Cdd:TIGR00540 333 ASLSLAP---TEEAHLELAQLFEQLGDTEAAAQHYRKS 367
|
|
| TPR_15 |
pfam13429 |
Tetratricopeptide repeat; |
162-401 |
5.61e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 433199 [Multi-domain] Cd Length: 279 Bit Score: 44.66 E-value: 5.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 162 ANQQNEIGgVNVYQRLAESlstagefedalewyEKAVKDQVDPNTLFGYGFTAMRAGRTktAIQQLSELKDIDPSYSSLY 241
Cdd:pfam13429 55 ALQQDDDA-RRAYRQLLAS--------------GKARADDYERLILLLYDARPKDAARL--SELGWRRFRSPRHLYSALY 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 242 MplaksYEEEGLYHEALEIVKEGIKVDEYNKELY--LYGAKIDLKNGHSEDAKKLLQEALALDPGYIEAVQTLLAIYLNE 319
Cdd:pfam13429 118 L-----YERAGDYDRLARLLASLEELPAAEQSPAfwLARAEYYRQTGEPDAALRDYRRALALAPASTELRAALLWFLIDL 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 320 ELFDEILDVIKEVKSFGEEDPK-WNWYAAsASVGREEYDEAAEYFKLALPdfDEERDFLY--EYASFLLEEGRQKEALPL 396
Cdd:pfam13429 193 GRRAELRPALAAWRARAETDADlWGPLAA-AYLRLGRPRKALPYLRKQAA--SNRNDPLWllAYADALEQAGRADAAWRL 269
|
....*
gi 495619981 397 LRKVL 401
Cdd:pfam13429 270 RRQAW 274
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
290-409 |
1.08e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 41.92 E-value: 1.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 290 DAKKLLQEALALDPGYIEAVQTLLAIYLNEELFDEILDVIKEVKSFGEEDPKWNWYAASASVGREEYDEAAEYFKLALPD 369
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 495619981 370 FDEERDFLYEYASFLLEEGRQKEALPLLRKVLQKDGTNEE 409
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAP 120
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
111-331 |
1.16e-04 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 44.20 E-value: 1.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 111 YQMQGLFEVSEQKLLKAKELLPHEAVIDFALGELYFSQGL-------SKKAADYFYKVANQQNEigGVNVYQRLAESLST 183
Cdd:TIGR00990 334 LNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASmnlelgdPDKAEEDFDKALKLNSE--DPDIYYHRAQLHFI 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 184 AGEFEDALEWYEKAVkdQVDPNTLFGY---GFTAMRAGRTKTAIQQLSELKDIDPSYSSLYMPLAKSYEEEGLYHEALEI 260
Cdd:TIGR00990 412 KGEFAQAGKDYQKSI--DLDPDFIFSHiqlGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEK 489
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 495619981 261 VKEGIKVDEYNKELY-----LYGAKIDL---KNGHSEdAKKLLQEALALDPGYIEAVQTLLAIYLNEELFDEILDVIKE 331
Cdd:TIGR00990 490 FDTAIELEKETKPMYmnvlpLINKALALfqwKQDFIE-AENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFER 567
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
127-268 |
1.72e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 41.87 E-value: 1.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 127 AKELLPHEAVIDFALGELYFSQGLSKKAADYFYKVANQQNEIGGVNVYQRLAESLSTAGEFEDALEWYEKAVK-DQVDPN 205
Cdd:COG5010 10 LPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQlDPNNPE 89
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 495619981 206 TLFGYGFTAMRAGRTKTAIQQLSELKDIDPSYSSLYMPLAKSYEEEGLYHEALEIVKEGIKVD 268
Cdd:COG5010 90 LYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
177-319 |
2.21e-04 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 43.26 E-value: 2.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 177 LAESLSTAGEFEDALEWYEKAVkdQVDPN------TLfgyGFTAMRAGRTKTAIQQLSELKDIDPSYSSLYMP-LAKSYE 249
Cdd:PRK11788 186 LAQQALARGDLDAARALLKKAL--AADPQcvrasiLL---GDLALAQGDYAAAIEALERVEEQDPEYLSEVLPkLMECYQ 260
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 495619981 250 EEGLYHEALEIVKEgiKVDEY-NKELYLYGAKIDLKNGHSEDAKKLLQEALALDPGyIEAVQTLLAIYLNE 319
Cdd:PRK11788 261 ALGDEAEGLEFLRR--ALEEYpGADLLLALAQLLEEQEGPEAAQALLREQLRRHPS-LRGFHRLLDYHLAE 328
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
213-303 |
2.85e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 41.10 E-value: 2.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 213 TAMRAGRTKTAIQQLSELKDIDPSYSSLYMPLAKSYEEEGLYHEALEIVKEGIKVDEYNKELYLYGAKIDLKNGHSEDAK 292
Cdd:COG5010 63 LYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAK 142
|
90
....*....|.
gi 495619981 293 KLLQEALALDP 303
Cdd:COG5010 143 AALQRALGTSP 153
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
51-199 |
1.36e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.17 E-value: 1.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 51 KARNLISDLHDLYPEETGLTCFYAELLIDSDEEEKAIAVLETIPEDDDAYPESLLLMADLYQMQGLFEVSEQKLLKAKEL 130
Cdd:COG5010 4 LEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 495619981 131 LPHEAVIDFALGELYFSQGLSKKAADYFYKVANQQNeiGGVNVYQRLAESLSTAGEFEDALEWYEKAVK 199
Cdd:COG5010 84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSP--DNPNAYSNLAALLLSLGQDDEAKAALQRALG 150
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
47-110 |
1.87e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 36.41 E-value: 1.87e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 495619981 47 GDIDKARNLISDLHDLYPEETGLTCFYAELLIDSDEEEKAIAVLETIPEDDDAYPESLLLMADL 110
Cdd:pfam14559 2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
173-367 |
3.72e-03 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 38.74 E-value: 3.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 173 VYQRLAESLSTAGEFEDALEWYEKAVKDQVDPNTLFGYGFTAMRAGRTKTAIQQLSELKDIDPSYSSLYMPLAKSYEEEG 252
Cdd:COG4785 8 LLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 253 LYHEALEIVKEGIKVDEYNKELYLYGAKIDLKNGHSEDAKKLLQEALALDPGYIEAVQTLLAIYLNEELFDEILDVIKEV 332
Cdd:COG4785 88 DYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKA 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 495619981 333 KSFGEEDPK--WNWYAASASVGRE------------------EYDEAAEYFKLAL 367
Cdd:COG4785 168 LELDPNDPEraLWLYLAERKLDPEkalallledwatayllqgDTEEARELFKLAL 222
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
135-199 |
3.75e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 36.21 E-value: 3.75e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 495619981 135 AVIDFALGELYFSQGLSKKAADYFYKVANQQNEIGG------VNVYQRLAESLSTAGEFEDALEWYEKAVK 199
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGpdhpltATTLLNLGRLYLELGRYEEALELLERALA 73
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
144-236 |
4.09e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 36.30 E-value: 4.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 144 LYFSQGLSKKAADYFYKVANQQNEIGgvNVYQRLAESLSTAGEFEDALEwYEKAVK-DQVDPNTLFGYGFTAMRAGRTKT 222
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNA--DALNNLGLLLLEQGRYDEAIA-LEKALKlDPNNAEALLNLAELLLELGDYDE 77
|
90
....*....|....
gi 495619981 223 AIQQLSELKDIDPS 236
Cdd:COG3063 78 ALAYLERALELDPS 91
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
248-332 |
4.38e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 37.63 E-value: 4.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 248 YEEEGLYHEALEIVKEGIKVDEYNKELYLYGAKIDLKNGHSEDAKKLLQEALALDPGYIEAVQTLLAIYLNEELFDEILD 327
Cdd:COG5010 64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKA 143
|
....*
gi 495619981 328 VIKEV 332
Cdd:COG5010 144 ALQRA 148
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
110-201 |
6.35e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 35.92 E-value: 6.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 110 LYQMQGLFEVSEQKLLKAKELLPHEAVIDFALGELYFSQGLSKKAADYFYKVANQQNEiggVNVYQRLAESLSTAGEFED 189
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEKALKLDPNN---AEALLNLAELLLELGDYDE 77
|
90
....*....|..
gi 495619981 190 ALEWYEKAVKDQ 201
Cdd:COG3063 78 ALAYLERALELD 89
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
279-403 |
6.50e-03 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 38.35 E-value: 6.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 279 AKIDLKNGHSEDAKKLLQEALALDPGYIEAVQTLLAIYLNEELFDEILDVIKEVKSFGEEDPKW------NWYAASASVG 352
Cdd:COG3071 92 AELLLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELLELLPALRKHKALSAEEaqalerRAYLGLLRQA 171
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 495619981 353 REEYDEAAEYFKlALPDFD-EERDFLYEYASFLLEEGRQKEALPLLRKVLQK 403
Cdd:COG3071 172 ARDAEALKALWK-ALPRAErRDPELAAAYARALIALGDHDEAERLLREALKR 222
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
5-132 |
7.57e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 36.86 E-value: 7.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 5 LQEAIKLVEAGETEKGLQTLAQAEKHLHDEEKAQAAQLYYDWGDIDKARNLISDLHDLYPEETGLTCFYAELLIDSDEEE 84
Cdd:COG5010 26 KYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKD 105
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 495619981 85 KAIAVLETIPEDDDAYPESLLLMADLYQMQGLFEVSEQKLLKAKELLP 132
Cdd:COG5010 106 EAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| hmsH |
PRK14574 |
poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA; |
193-297 |
9.70e-03 |
|
poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA;
Pssm-ID: 173038 [Multi-domain] Cd Length: 822 Bit Score: 38.16 E-value: 9.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495619981 193 WYEKAVKDQVDPNTLFGYGFTAMRAGRTKTAIQQLSELKDIDPSYSSlYMPLAKSYEEEGLYHEALEIVKEGIKVDEYNK 272
Cdd:PRK14574 125 WQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQN-YMTLSYLNRATDRNYDALQASSEAVRLAPTSE 203
|
90 100
....*....|....*....|....*
gi 495619981 273 ELYLYGAKIDLKNGHSEDAKKLLQE 297
Cdd:PRK14574 204 EVLKNHLEILQRNRIVEPALRLAKE 228
|
|
| |
