|
Name |
Accession |
Description |
Interval |
E-value |
| PRK09302 |
PRK09302 |
circadian clock protein KaiC; Reviewed |
1-504 |
0e+00 |
|
circadian clock protein KaiC; Reviewed
Pssm-ID: 236461 [Multi-domain] Cd Length: 509 Bit Score: 854.56 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 1 MTQENELDYIEKLETAIPGFDFLSEGGLPKGRATLVAGTAGSSKTVFACQFLAEGIKR-GENGVFVTFEEPPKALRRNMR 79
Cdd:PRK09302 1 MNQPSASPGIEKLPTGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRfDEPGVFVTFEESPEDIIRNVA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 80 GFGWNIAQWELERKWAFVDASPQPGEpIMVTGDYDLGALIARIEFAIRKYNAQRVSMDSLGAIFSHLSDSAQVRSDLFRL 159
Cdd:PRK09302 81 SFGWDLQKLIDEGKLFILDASPDPSE-QEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFSGFSNEAVVRRELRRL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 160 ASALRELGVTAIMTAERTQEYGDISRFGVEEFVADNVVILRNVLADEKRRRTIEILKYRGTDHQKGEYPFTIvPGRGVVI 239
Cdd:PRK09302 160 FAWLKQKGVTAVITGERGDEYGPLTRYGVEEFVSDCVIILRNRLEGEKRTRTLRILKYRGTTHGKNEYPFTI-TEDGISV 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 240 IPLSAIVLEQKSSNIRITSGSHELDRMCGGGFFRDSIILVSGATGTGKTLMVTEFMAGGVVNDERCLIFAFEESREQLFR 319
Cdd:PRK09302 239 LPLTAMRLTQRSSNERISSGVPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIR 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 320 NATGWGVDFEEMEKQGKLKVVCRYPETTGLENHLINMKETIETFKPNRVAVDSLSALERVSTLKGFREFIIGLTSFIKQQ 399
Cdd:PRK09302 319 NARSWGIDLEKMEEKGLLKIICARPESYGLEDHLIIIKREIEEFKPSRVAIDPLSALARGGSLNEFRQFVIRLTDYLKSE 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 400 EIGGLFTSTTPTLLGGSSITEAHISTITDSIILLRYVEMYGEMRRGITVLKMRGSMHDKDIREFAIDNKGMHIGKPFRNV 479
Cdd:PRK09302 399 EITGLFTNLTPDFMGSHSITESHISSLTDTWILLQYVEINGEMNRALYVLKMRGSWHSNQIREFVITDKGIHIKDPFRGF 478
|
490 500
....*....|....*....|....*.
gi 495552294 480 TGILSGSPMYTAQSEVDR-LSNLFEE 504
Cdd:PRK09302 479 EGILSGSPRRAQEAEERReLSRRFEE 504
|
|
| circ_KaiC |
TIGR02655 |
circadian clock protein KaiC; Members of this family are the circadian clock protein KaiC, ... |
11-487 |
0e+00 |
|
circadian clock protein KaiC; Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. [Cellular processes, Other]
Pssm-ID: 131703 [Multi-domain] Cd Length: 484 Bit Score: 611.95 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 11 EKLETAIPGFDFLSEGGLPKGRATLVAGTAGSSKTVFACQFLAEGIKR-GENGVFVTFEEPPKALRRNMRGFGWNIAQWE 89
Cdd:TIGR02655 1 AKIRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHfDEPGVFVTFEESPQDIIKNARSFGWDLQKLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 90 LERKWAFVDASPQPgEPIMVTGDYDLGALIARIEFAIRKYNAQRVSMDSLGAIFSHLSDSAQVRSDLFRLASALRELGVT 169
Cdd:TIGR02655 81 DEGKLFILDASPDP-EGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAVSVVRREIFRLVARLKQIGVT 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 170 AIMTAERTQEYGDISRFGVEEFVADNVVILRNVLADEKRRRTIEILKYRGTDHQKGEYPFTIVpGRGVVIIPLSAIVLEQ 249
Cdd:TIGR02655 160 TVMTTERIEEYGPIARYGVEEFVSDNVVILRNVLEGERRRRTLEILKLRGTSHMKGEYPFTIT-DHGINIFPLGAMRLTQ 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 250 KSSNIRITSGSHELDRMCGGGFFRDSIILVSGATGTGKTLMVTEFMAGGVVNDERCLIFAFEESREQLFRNATGWGVDFE 329
Cdd:TIGR02655 239 RSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFE 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 330 EMEKQGKLKVVCRYPETTGLENHLINMKETIETFKPNRVAVDSLSALERVSTLKGFREFIIGLTSFIKQQEIGGLFTSTT 409
Cdd:TIGR02655 319 EMEQQGLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGFFTNTS 398
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 495552294 410 PTLLGGSSITEAHISTITDSIILLRYVEMYGEMRRGITVLKMRGSMHDKDIREFAIDNKGMHIGKPFRNVTGILSGSP 487
Cdd:TIGR02655 399 DQFMGSHSITDSHISTITDTILMLQYVEIRGEMSRAINVFKMRGSWHDKGIREFMISDKGPEIKDSFRNFERIISGSP 476
|
|
| KaiC_C |
cd19484 |
C-terminal domain of Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most ... |
256-473 |
1.72e-123 |
|
C-terminal domain of Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410892 [Multi-domain] Cd Length: 218 Bit Score: 359.72 E-value: 1.72e-123
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 256 ITSGSHELDRMC-GGGFFRDSIILVSGATGTGKTLMVTEFMAGGVVNDERCLIFAFEESREQLFRNATGWGVDFEEMEKQ 334
Cdd:cd19484 1 ISTGIPRLDAMLgGGGFFRGSSILVSGATGTGKTLLAASFADAACRRGERCLYFAFEESPAQLIRNAKSIGIDLEQMERK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 335 GKLKVVCRYPETTGLENHLINMKETIETFKPNRVAVDSLSALERVSTLKGFREFIIGLTSFIKQQEIGGLFTSTTPTlLG 414
Cdd:cd19484 81 GLLKIICARPELYGLEDHLIIIKSEINEFKPSRVIVDPLSALARGGSLNEVKEFVIRLIDYLKSQEITGLFTNLTPD-GG 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 495552294 415 GSSITEAHISTITDSIILLRYVEMYGEMRRGITVLKMRGSMHDKDIREFAIDNKGMHIG 473
Cdd:cd19484 160 SLEITEAGISSLTDTWILLRYVEINGERNRGLYVLKMRGMAHSNQIREFSISDKGIDIG 218
|
|
| KaiC-N |
cd19485 |
N-terminal domain of Circadian Clock Protein Kaic; KaiC is a circadian clock protein, most ... |
13-240 |
1.31e-120 |
|
N-terminal domain of Circadian Clock Protein Kaic; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410893 [Multi-domain] Cd Length: 226 Bit Score: 352.83 E-value: 1.31e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 13 LETAIPGFDFLSEGGLPKGRATLVAGTAGSSKTVFACQFLAEGIK-RGENGVFVTFEEPPKALRRNMRGFGWNIAQWELE 91
Cdd:cd19485 1 LPTGIEGFDDITHGGLPKGRPTLICGTAGTGKTLFAAQFLVNGIKeFGEPGVFVTFEESPEDIIKNMASFGWDLPKLVAE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 92 RKWAFVDASPQPGEpIMVTGDYDLGALIARIEFAIRKYNAQRVSMDSLGAIFSHLSDSAQVRSDLFRLASALRELGVTAI 171
Cdd:cd19485 81 GKLLILDASPEPSE-EEVTGEYDLEALLIRIEYAIRKIGAKRVSLDSLEAVFSGLSDSAVVRAELLRLFAWLKQKGVTAI 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 495552294 172 MTAERTqEYGDISRFGVEEFVADNVVILRNVLADEKRRRTIEILKYRGTDHQKGEYPFTIVPGrGVVII 240
Cdd:cd19485 160 MTGERG-EDGPLTRYGVEEYVSDCVVILRNVLEGERRRRTLEILKYRGSSHGKGEYPFTITEN-GISIL 226
|
|
| ATPase |
pfam06745 |
KaiC; This family is in the P-loop NTPase superfamily and is found in archaea, bacteria and ... |
13-242 |
3.44e-89 |
|
KaiC; This family is in the P-loop NTPase superfamily and is found in archaea, bacteria and eukaryotes. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Pssm-ID: 429095 [Multi-domain] Cd Length: 231 Bit Score: 272.58 E-value: 3.44e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 13 LETAIPGFDFLSEGGLPKGRATLVAGTAGSSKTVFACQFLAEGIKR-GENGVFVTFEEPPKALRRNMRGFGWNIAQWELE 91
Cdd:pfam06745 1 VKTGIPGLDEILKGGFPEGRVVLITGGPGTGKTIFGLQFLYNGALKyGEPGVFVTLEEPPEDLRENARSFGWDLEKLEEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 92 RKWAFVDASPQPGEPIMVTGDYDLGALIARIEFAIRKYNAQRVSMDSLGAIFsHLSDSAQVRSDLFRLASALRELGVTAI 171
Cdd:pfam06745 81 GKLAIIDASTSGIGIAEVEDRFDLEELIERLREAIREIGAKRVVIDSITTLF-YLLKPAVAREILRRLKRVLKGLGVTAI 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 495552294 172 MTAERTQEYGDISRFGVEEFVADNVVILRNVLADEKRRRTIEILKYRGTDHQKGEYPFTIVPGrGVVIIPL 242
Cdd:pfam06745 160 FTSEKPSGEGGIGGYGVEEFIVDGVIRLDLKEIEEERVRTIEIVKMRGTPHSMKRYPFEITDN-GIVVYPP 229
|
|
| RAD55 |
COG0467 |
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms]; |
255-473 |
1.95e-76 |
|
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms];
Pssm-ID: 440235 [Multi-domain] Cd Length: 221 Bit Score: 239.43 E-value: 1.95e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 255 RITSGSHELDRMCGGGFFRDSIILVSGATGTGKTLMVTEFMAGGVVNDERCLIFAFEESREQLFRNATGWGVDFEEMEKQ 334
Cdd:COG0467 1 RVPTGIPGLDELLGGGLPRGSSTLLSGPPGTGKTTLALQFLAEGLRRGEKGLYVSFEESPEQLLRRAESLGLDLEEYIES 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 335 GKLKVVCRYPET--TGLENHLINMKETIETFKPNRVAVDSLSALER-VSTLKGFREFIIGLTSFIKQQEIGGLFTSTTPT 411
Cdd:COG0467 81 GLLRIIDLSPEElgLDLEELLARLREAVEEFGAKRVVIDSLSGLLLaLPDPERLREFLHRLLRYLKKRGVTTLLTSETGG 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 495552294 412 llGGSSITEAHISTITDSIILLRYVEMYGEMRRGITVLKMRGSMHDKDIREFAIDNKGMHIG 473
Cdd:COG0467 161 --LEDEATEGGLSYLADGVILLRYVELGGELRRALSVLKMRGSAHDRTIREFEITDGGIEVG 220
|
|
| KaiC-like |
cd01124 |
Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. ... |
13-240 |
4.02e-64 |
|
Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410869 [Multi-domain] Cd Length: 222 Bit Score: 207.50 E-value: 4.02e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 13 LETAIPGFDFLSEGGLPKGRATLVAGTAGSSKTVFACQFLAEGIKRGENGVFVTFEEPPKALRRNMRGFGWNIAQWELER 92
Cdd:cd01124 1 VKTGIPGLDELLGGGIPKGSVTLLTGGPGTGKTLFGLQFLYAGAKNGEPGLFFTFEESPERLLRNAKSFGWDFDEMEDEG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 93 KWAFVDASPQPgepimvTGDYDLGALIARIEFAIRKYNAQRVSMDSLGAIFSHLSDSAQVRSDLFRLASALRELGVTAIM 172
Cdd:cd01124 81 KLIIVDAPPTE------AGRFSLDELLSRILSIIKSFKAKRVVIDSLSGLRRAKEDQMRARRIVIALLNELRAAGVTTIF 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 495552294 173 TAERTQ-EYGDISRFGVEEFVADNVVILRNVLADEKRRRTIEILKYRGTDHQKGEYPFTIVPGrGVVII 240
Cdd:cd01124 155 TSEMRSfLSSESAGGGDVSFIVDGVILLRYVEIEGELRRTIRVLKMRGTGHDTGTHPFEITDK-GIVVF 222
|
|
| RAD55 |
COG0467 |
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms]; |
12-241 |
4.60e-64 |
|
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms];
Pssm-ID: 440235 [Multi-domain] Cd Length: 221 Bit Score: 207.46 E-value: 4.60e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 12 KLETAIPGFDFLSEGGLPKGRATLVAGTAGSSKTVFACQFLAEGIKRGENGVFVTFEEPPKALRRNMRGFGWNIAQWELE 91
Cdd:COG0467 1 RVPTGIPGLDELLGGGLPRGSSTLLSGPPGTGKTTLALQFLAEGLRRGEKGLYVSFEESPEQLLRRAESLGLDLEEYIES 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 92 RKWAFVDASPqpgepimVTGDYDLGALIARIEFAIRKYNAQRVSMDSLGAIFSHLSDSAQVRSDLFRLASALRELGVTAI 171
Cdd:COG0467 81 GLLRIIDLSP-------EELGLDLEELLARLREAVEEFGAKRVVIDSLSGLLLALPDPERLREFLHRLLRYLKKRGVTTL 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 172 MTAErTQEYGDISRFGVEEFVADNVVILRNVLADEKRRRTIEILKYRGTDHQKGEYPFTIVPGrGVVIIP 241
Cdd:COG0467 154 LTSE-TGGLEDEATEGGLSYLADGVILLRYVELGGELRRALSVLKMRGSAHDRTIREFEITDG-GIEVGE 221
|
|
| KaiC-like |
cd01124 |
Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. ... |
256-470 |
5.11e-62 |
|
Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410869 [Multi-domain] Cd Length: 222 Bit Score: 202.11 E-value: 5.11e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 256 ITSGSHELDRMCGGGFFRDSIILVSGATGTGKTLMVTEFMAGGVVNDERCLIFAFEESREQLFRNATGWGVDFEEMEKQG 335
Cdd:cd01124 1 VKTGIPGLDELLGGGIPKGSVTLLTGGPGTGKTLFGLQFLYAGAKNGEPGLFFTFEESPERLLRNAKSFGWDFDEMEDEG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 336 KLKVVCRYPETTG---LENHLINMKETIETFKPNRVAVDSLSALER-VSTLKGFREFIIGLTSFIKQQEIGGLFTSTTPT 411
Cdd:cd01124 81 KLIIVDAPPTEAGrfsLDELLSRILSIIKSFKAKRVVIDSLSGLRRaKEDQMRARRIVIALLNELRAAGVTTIFTSEMRS 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 495552294 412 LLGGSSITEAHISTITDSIILLRYVEMYGEMRRGITVLKMRGSMHDKDIREFAIDNKGM 470
Cdd:cd01124 161 FLSSESAGGGDVSFIVDGVILLRYVEIEGELRRTIRVLKMRGTGHDTGTHPFEITDKGI 219
|
|
| PRK04328 |
PRK04328 |
hypothetical protein; Provisional |
10-241 |
7.08e-40 |
|
hypothetical protein; Provisional
Pssm-ID: 235281 Cd Length: 249 Bit Score: 144.45 E-value: 7.08e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 10 IEKLETAIPGFDFLSEGGLPKGRATLVAGTAGSSKTVFACQFLAEGIKRGENGVFVTFEEPPKALRRNMRGFGWNIAQWE 89
Cdd:PRK04328 2 VKRVKTGIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRRNMRQFGWDVRKYE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 90 LERKWAFVDA------SPQPGEPIMVTGDYDLGALIARIEFAIRKYNAQRVSMDSLGAIFshLSDSAQVRSDLFRLASAL 163
Cdd:PRK04328 82 EEGKFAIVDAftggigSAAKREKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVSTLY--LTKPAMARSIVMQLKRVL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 164 RELGVTAIMTAE-RTQEYGdisrF---GVEEFVaDNVVILRNVLADEKRRRTIEILKYRGTDHQKGEYPFTIVpGRGVVI 239
Cdd:PRK04328 160 SGLGCTAIFVSQvSVGERG----FggpGVEHAV-DGIIRLDLDEIDGELKRSLIVWKMRGTKHSMRRHPFEIT-DKGIVV 233
|
..
gi 495552294 240 IP 241
Cdd:PRK04328 234 YP 235
|
|
| KaiC-like_C |
cd19487 |
C-terminal domain of KaiC family protein; uncharacterized subfamily; KaiC is a circadian clock ... |
256-473 |
1.06e-39 |
|
C-terminal domain of KaiC family protein; uncharacterized subfamily; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410895 [Multi-domain] Cd Length: 219 Bit Score: 143.21 E-value: 1.06e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 256 ITSGSHELDRMCGGGFFRDSIILVSGATGTGKTLMVTEFMAGGVVNDERCLIFAFEESREQLFRNATGWGVDFEEMEKQG 335
Cdd:cd19487 1 VSSGVPELDELLGGGLERGTSTLLIGPAGVGKSTLALQFAKAAAARGERSVLFSFDESIGTLFERSEALGIDLRAMVEKG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 336 KLKVVCRYPE--TTGLENHLInmKETIETFKPNRVAVDS----LSAL--ERVSTLKgfrefIIGLTSFIKQQEIGGLFTS 407
Cdd:cd19487 81 LLSIEQIDPAelSPGEFAQRV--RTSVEQEDARVVVIDSlngyLNAMpdERFLILQ-----MHELLSYLNNQGVTTLLIV 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 495552294 408 TTPTLLGGSSITEAHISTITDSIILLRYVEMYGEMRRGITVLKMRGSMHDKDIREFAIDNKGMHIG 473
Cdd:cd19487 154 AQHGLLGGDMGTPVDISYLADTVVLLRYFEAEGEVRKAISVLKKRTGDHERTIREFRITRSGLKVG 219
|
|
| ATPase |
pfam06745 |
KaiC; This family is in the P-loop NTPase superfamily and is found in archaea, bacteria and ... |
258-475 |
4.75e-37 |
|
KaiC; This family is in the P-loop NTPase superfamily and is found in archaea, bacteria and eukaryotes. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Pssm-ID: 429095 [Multi-domain] Cd Length: 231 Bit Score: 136.22 E-value: 4.75e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 258 SGSHELDRMCGGGFFRDSIILVSGATGTGKTLMVTEFM-AGGVVNDERCLIFAFEESREQLFRNATGWGVDFEEMEKQGK 336
Cdd:pfam06745 3 TGIPGLDEILKGGFPEGRVVLITGGPGTGKTIFGLQFLyNGALKYGEPGVFVTLEEPPEDLRENARSFGWDLEKLEEEGK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 337 LKVV------CRYPETTG---LENHLINMKETIETFKPNRVAVDSLSALERVSTLKGFREFIIGLTSFIKQQEIGGLFTS 407
Cdd:pfam06745 83 LAIIdastsgIGIAEVEDrfdLEELIERLREAIREIGAKRVVIDSITTLFYLLKPAVAREILRRLKRVLKGLGVTAIFTS 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 495552294 408 TTPTLLGGSS---ITEahisTITDSIILLRYVEMYGEMRRGITVLKMRGSMHDKDIREFAIDNKGMHIGKP 475
Cdd:pfam06745 163 EKPSGEGGIGgygVEE----FIVDGVIRLDLKEIEEERVRTIEIVKMRGTPHSMKRYPFEITDNGIVVYPP 229
|
|
| KaiC_arch |
cd19486 |
KaiC family protein; uncharacterized subfamily similar to Pyrococcus horikoshii PH0284; KaiC ... |
13-239 |
3.06e-36 |
|
KaiC family protein; uncharacterized subfamily similar to Pyrococcus horikoshii PH0284; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410894 Cd Length: 230 Bit Score: 134.14 E-value: 3.06e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 13 LETAIPGFDFLSEGGLPKGRATLVAGTAGSSKTVFACQFLAEGIKRGENGVFVTFEEPPKALRRNMRGFGWNIAQWELER 92
Cdd:cd19486 1 VKTGIPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLKEGEPGVFVALEEHPVQVRRNMEQFGWDVREYEREG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 93 KWAFVDA------SPQPGEPIMVTGDYDLGALIARIEFAIRKYNAQRVSMDSLGAIFshLSDSAQVRSDLFRLASALREL 166
Cdd:cd19486 81 KFAIVDAftggigEAAEREKYVVKDPDDVRELIDVLRQAIRDIGAKRVVIDSVTTLY--ITKPAMARRIVMQLKRVLSGL 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 495552294 167 GVTAIMTAERTQEYGDISRFGVEEFVaDNVVILRNVLADEKRRRTIEILKYRGTDHQKGEYPFTIVPGrGVVI 239
Cdd:cd19486 159 GCTSIFVSQVSVGERGFGGPGVEHAV-DGIIRLDLDEVDGELKRSLIVWKMRGTKHSMRRHPFEITDK-GIIV 229
|
|
| KaiC-like_N |
cd19488 |
N-terminal domain of KaiC family protein; uncharacterized subfamily; KaiC is a circadian clock ... |
13-239 |
1.28e-28 |
|
N-terminal domain of KaiC family protein; uncharacterized subfamily; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410896 [Multi-domain] Cd Length: 225 Bit Score: 113.21 E-value: 1.28e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 13 LETAIPGFDFLSEGGLPKGRATLVAGTAGSSKTVFACQFLAEGIKRGENGVFVTFEEPPKALRRNMRGFGWNIAQ---WE 89
Cdd:cd19488 1 ISTGIPGLDDILRGGLPPRRLYLVEGAPGTGKTTLALQFLLEGAANGETGLYITLSETEQELRAVALSHGWSLDGihiFE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 90 LERKWAFVDASPQpgEPIMVTGDYDLGALIARIEFAIRKYNAQRVSMDSLGAIFSHLSDSAQVRSDLFRLASALRELGVT 169
Cdd:cd19488 81 LSPSESALDAAQQ--YTILHPSELELSETTRLIFERVERLKPSRVVIDSLSELRLLAQDSLRYRRQILALKQFFAGRNTT 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 495552294 170 AIMTAERTQEYGDISRfgveEFVADNVVILRNVLAD-EKRRRTIEILKYRGTDHQKGEYPFTIVPGrGVVI 239
Cdd:cd19488 159 VLLLDDLTSDAADLDL----HSIAHGVIRLEQLESDyGAARRRLRVSKMRGSSFRGGYHDFRITRG-GLQV 224
|
|
| KaiC_C |
cd19484 |
C-terminal domain of Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most ... |
15-240 |
1.14e-25 |
|
C-terminal domain of Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410892 [Multi-domain] Cd Length: 218 Bit Score: 104.72 E-value: 1.14e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 15 TAIPGFD-FLSEGGLPKGRATLVAGTAGSSKTVFACQFLAEGIKRGENGVFVTFEEPPKALRRNMRGFGWNIAQWELERK 93
Cdd:cd19484 3 TGIPRLDaMLGGGGFFRGSSILVSGATGTGKTLLAASFADAACRRGERCLYFAFEESPAQLIRNAKSIGIDLEQMERKGL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 94 WAFVDASPQpgepimvtgDYDLGALIARIEFAIRKYNAQRVSMDSLGAiFSHLSDSAQVRSDLFRLASALRELGVTAIMT 173
Cdd:cd19484 83 LKIICARPE---------LYGLEDHLIIIKSEINEFKPSRVIVDPLSA-LARGGSLNEVKEFVIRLIDYLKSQEITGLFT 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 495552294 174 AERTQEYGD-ISRFGVEEfVADNVVILRNVLADEKRRRTIEILKYRGTDHQKGEYPFTIvPGRGVVII 240
Cdd:cd19484 153 NLTPDGGSLeITEAGISS-LTDTWILLRYVEINGERNRGLYVLKMRGMAHSNQIREFSI-SDKGIDIG 218
|
|
| KaiC-like_N |
cd19488 |
N-terminal domain of KaiC family protein; uncharacterized subfamily; KaiC is a circadian clock ... |
256-472 |
4.92e-25 |
|
N-terminal domain of KaiC family protein; uncharacterized subfamily; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410896 [Multi-domain] Cd Length: 225 Bit Score: 103.20 E-value: 4.92e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 256 ITSGSHELDRMCGGGFFRDSIILVSGATGTGKTLMVTEFMAGGVVNDERCLIFAFEESREQLFRNA--TGW---GVDFEE 330
Cdd:cd19488 1 ISTGIPGLDDILRGGLPPRRLYLVEGAPGTGKTTLALQFLLEGAANGETGLYITLSETEQELRAVAlsHGWsldGIHIFE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 331 M----------EKQGKLkvvcrYPETTGLENHLINMKETIETFKPNRVAVDSLSALERV--STLKgFREFIIGLTSFIKQ 398
Cdd:cd19488 81 LspsesaldaaQQYTIL-----HPSELELSETTRLIFERVERLKPSRVVIDSLSELRLLaqDSLR-YRRQILALKQFFAG 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 495552294 399 QEIGGLFTSTTPtllggSSITEAHISTITDSIILLRYVEM-YGEMRRGITVLKMRGSMHDKDIREFAIDNKGMHI 472
Cdd:cd19488 155 RNTTVLLLDDLT-----SDAADLDLHSIAHGVIRLEQLESdYGAARRRLRVSKMRGSSFRGGYHDFRITRGGLQV 224
|
|
| KaiC-N |
cd19485 |
N-terminal domain of Circadian Clock Protein Kaic; KaiC is a circadian clock protein, most ... |
263-472 |
1.71e-21 |
|
N-terminal domain of Circadian Clock Protein Kaic; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410893 [Multi-domain] Cd Length: 226 Bit Score: 92.82 E-value: 1.71e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 263 LDRMCGGGFFRDSIILVSGATGTGKTLMVTEFMAGGVVN-DERCLIFAFEESREQLFRNATGWGVDFEEMEKQGKLKVVC 341
Cdd:cd19485 8 FDDITHGGLPKGRPTLICGTAGTGKTLFAAQFLVNGIKEfGEPGVFVTFEESPEDIIKNMASFGWDLPKLVAEGKLLILD 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 342 RYPETTG--------LENHLINMKETIETFKPNRVAVDSLSAL-ERVSTLKGFREFIIGLTSFIKQQEIGGLFTsttptl 412
Cdd:cd19485 88 ASPEPSEeevtgeydLEALLIRIEYAIRKIGAKRVSLDSLEAVfSGLSDSAVVRAELLRLFAWLKQKGVTAIMT------ 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 495552294 413 lgGSSITEAHIST------ITDSIILLRYVEMYGEMRRGITVLKMRGSMHDKDIREFAIDNKGMHI 472
Cdd:cd19485 162 --GERGEDGPLTRygveeyVSDCVVILRNVLEGERRRRTLEILKYRGSSHGKGEYPFTITENGISI 225
|
|
| PRK04328 |
PRK04328 |
hypothetical protein; Provisional |
255-472 |
3.87e-19 |
|
hypothetical protein; Provisional
Pssm-ID: 235281 Cd Length: 249 Bit Score: 86.67 E-value: 3.87e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 255 RITSGSHELDRMCGGGFFRDSIILVSGATGTGKTLMVTEFMAGGVVNDERCLIFAFEESREQLFRNATGWGVDFEEMEKQ 334
Cdd:PRK04328 4 RVKTGIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRRNMRQFGWDVRKYEEE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 335 GKLKVVCRYpeTTGL----------------ENHLI-NMKETIETFKPNRVAVDSLS-------ALERvSTLKGFREFII 390
Cdd:PRK04328 84 GKFAIVDAF--TGGIgsaakrekyvvkdpddVRELIdVLRQAIKDIGAKRVVIDSVStlyltkpAMAR-SIVMQLKRVLS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 391 GL--TSFIKQQeigglfTSTTPTLLGGSSITEAhistiTDSIILLRYVEMYGEMRRGITVLKMRGSMHDKDIREFAIDNK 468
Cdd:PRK04328 161 GLgcTAIFVSQ------VSVGERGFGGPGVEHA-----VDGIIRLDLDEIDGELKRSLIVWKMRGTKHSMRRHPFEITDK 229
|
....
gi 495552294 469 GMHI 472
Cdd:PRK04328 230 GIVV 233
|
|
| KaiC-like_C |
cd19487 |
C-terminal domain of KaiC family protein; uncharacterized subfamily; KaiC is a circadian clock ... |
17-224 |
8.34e-19 |
|
C-terminal domain of KaiC family protein; uncharacterized subfamily; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410895 [Multi-domain] Cd Length: 219 Bit Score: 85.04 E-value: 8.34e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 17 IPGFDFLSEGGLPKGRATLVAGTAGSSKTVFACQFLAEGIKRGENGVFVTFEEPPKALRRNMRGFGWNIAQWELERKWAF 96
Cdd:cd19487 5 VPELDELLGGGLERGTSTLLIGPAGVGKSTLALQFAKAAAARGERSVLFSFDESIGTLFERSEALGIDLRAMVEKGLLSI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 97 VDASPqpgepimvtGDYDLGALIARIEFAIRKYNAQRVSMDSLGAIFSHLSDSAQVRSDLFRLASALRELGVTAIMTAER 176
Cdd:cd19487 85 EQIDP---------AELSPGEFAQRVRTSVEQEDARVVVIDSLNGYLNAMPDERFLILQMHELLSYLNNQGVTTLLIVAQ 155
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 495552294 177 TQEYGDISRFGVE-EFVADNVVILRNVLADEKRRRTIEILKYRGTDHQK 224
Cdd:cd19487 156 HGLLGGDMGTPVDiSYLADTVVLLRYFEAEGEVRKAISVLKKRTGDHER 204
|
|
| KaiC_arch |
cd19486 |
KaiC family protein; uncharacterized subfamily similar to Pyrococcus horikoshii PH0284; KaiC ... |
256-472 |
2.89e-17 |
|
KaiC family protein; uncharacterized subfamily similar to Pyrococcus horikoshii PH0284; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410894 Cd Length: 230 Bit Score: 80.98 E-value: 2.89e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 256 ITSGSHELDRMCGGGFFRDSIILVSGATGTGKTLMVTEFMAGGVVNDERCLIFAFEESREQLFRNATGWGVDFEEMEKQG 335
Cdd:cd19486 1 VKTGIPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLKEGEPGVFVALEEHPVQVRRNMEQFGWDVREYEREG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 336 KLKVVCRYpeTTGL------ENHLIN-----------MKETIETFKPNRVAVDSLS-------ALERvSTLKGFREFIIG 391
Cdd:cd19486 81 KFAIVDAF--TGGIgeaaerEKYVVKdpddvrelidvLRQAIRDIGAKRVVIDSVTtlyitkpAMAR-RIVMQLKRVLSG 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 392 L--TSFIKQQeigglfTSTTPTLLGGSSITEAhistiTDSIILLRYVEMYGEMRRGITVLKMRGSMHDKDIREFAIDNKG 469
Cdd:cd19486 158 LgcTSIFVSQ------VSVGERGFGGPGVEHA-----VDGIIRLDLDEVDGELKRSLIVWKMRGTKHSMRRHPFEITDKG 226
|
...
gi 495552294 470 MHI 472
Cdd:cd19486 227 IIV 229
|
|
| FlaH |
COG2874 |
Archaellum biogenesis ATPase ArlH/FlaH [Cell motility]; |
254-455 |
4.35e-08 |
|
Archaellum biogenesis ATPase ArlH/FlaH [Cell motility];
Pssm-ID: 442121 Cd Length: 230 Bit Score: 53.68 E-value: 4.35e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 254 IRITSGSHELDRMCGGGFFRDSIILVSGATGTGKTLMVTEFMAGGVVNDERCLIFAFEESREQLFRNATGWGVDFEEMEK 333
Cdd:COG2874 1 EIISTGNDELDKRLGGGIPLGSLVLIEGENGTGKSVLSQQFAYGALENGLSVTYISTELTTKEFIKQMKSLSYDISDYLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 334 QGKLKVVCRYPETTGLEN-------HLINMKETIETFKPNRVAVDSLSALERVSTLKGFREFIigltSFIKQQEIGG--L 404
Cdd:COG2874 81 RGRLLFLPVHPLGFEWNSkqrkdllKRLMKYIASNLWEADVIIIDSLSALLRNAEESAILDFI----TFFKNLVDLGktI 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 495552294 405 FTSTTPTLLGGSSITeaHISTITDSIILLRYVEMYGEMRRGITVLKMRGSM 455
Cdd:COG2874 157 ILTVHPSALDEDILT--RLRSIADVYLKLSLASVGGRVVKVLEVVKFRGAR 205
|
|
| Sms |
COG1066 |
DNA repair protein RadA/Sms, contains AAA+ ATPase domain [Replication, recombination and ... |
234-316 |
2.29e-07 |
|
DNA repair protein RadA/Sms, contains AAA+ ATPase domain [Replication, recombination and repair];
Pssm-ID: 440685 [Multi-domain] Cd Length: 453 Bit Score: 53.13 E-value: 2.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 234 GRGVVIIPLSAIVLEQKSsniRITSGSHELDRMCGGGFFRDSIILVSGATGTGK-TLM--VTEFMAGgvvNDERCLIFAF 310
Cdd:COG1066 52 GRASKPVPLSEVEAEEEP---RISTGIGELDRVLGGGLVPGSVVLIGGEPGIGKsTLLlqVAARLAK---KGGKVLYVSG 125
|
....*.
gi 495552294 311 EESREQ 316
Cdd:COG1066 126 EESASQ 131
|
|
| RadA_SMS_N |
cd01121 |
bacterial RadA DNA repair protein; Sms or bacterial RadA is a DNA repair protein that plays a ... |
240-372 |
3.04e-07 |
|
bacterial RadA DNA repair protein; Sms or bacterial RadA is a DNA repair protein that plays a role in recombination and recombinational repair of DNA damaged by UV radiation, X-rays, and chemical agent and is responsible for the stabilization or processing of branched DNA molecules.
Pssm-ID: 410866 [Multi-domain] Cd Length: 268 Bit Score: 51.76 E-value: 3.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 240 IPLSAIVLEQKSsniRITSGSHELDRMCGGGFFRDSIILVSGATGTGK-TLM--VTEFMAGgvvNDERCLIFAFEESREQ 316
Cdd:cd01121 51 LPLSDVEAEEEE---RISTGIGELDRVLGGGLVPGSVVLIGGDPGIGKsTLLlqVAARLAQ---RGGKVLYVSGEESLSQ 124
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 495552294 317 LFRNATGWGVDFEEmekqgkLKVVCrypettglENHLINMKETIETFKPNRVAVDS 372
Cdd:cd01121 125 IKLRAERLGLGSDN------LYLLA--------ETNLEAILAEIEELKPSLVVIDS 166
|
|
| PRK06067 |
PRK06067 |
flagellar accessory protein FlaH; Validated |
256-454 |
8.80e-07 |
|
flagellar accessory protein FlaH; Validated
Pssm-ID: 180381 Cd Length: 234 Bit Score: 49.97 E-value: 8.80e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 256 ITSGSHELDRMCGGGFFRDSIILVSGATGTGKTLMVTEFMAGGVVNDERCLIFAFEESREQLFRNATGWGVDFEEMEKQG 335
Cdd:PRK06067 7 ISTGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWG 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 336 KLKV----VCRYPETTGLENHLIN-MKETIETFKPNRVAVDSLSALERVSTLKGFREFIIGLTSFIKQ-QEIggLFTSTT 409
Cdd:PRK06067 87 YLRIfplnTEGFEWNSTLANKLLElIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLgKTI--LITLHP 164
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 495552294 410 PTLlggSSITEAHISTITDSIILLRYVEMYGEMRRGITVLKMRGS 454
Cdd:PRK06067 165 YAF---SEELLSRIRSICDVYLKLRAEQIGGRYVKVLEVVKLRGA 206
|
|
| AAA_25 |
pfam13481 |
AAA domain; This AAA domain is found in a wide variety of presumed DNA repair proteins. |
10-173 |
7.24e-06 |
|
AAA domain; This AAA domain is found in a wide variety of presumed DNA repair proteins.
Pssm-ID: 463892 [Multi-domain] Cd Length: 193 Bit Score: 46.61 E-value: 7.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 10 IEKLETAIPGFDFLSEGGLPKGRATLVAGTAGSSKTVFACQ---FLAEGIK--------RGENGVFVTFEEPPKALRRNM 78
Cdd:pfam13481 12 ADGLAAPPPPRRWLIKGLLPAGGLGLLAGAPGTGKTTLALDlaaAVATGKPwlggprvpEQGKVLYVSAEGPADELRRRL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 79 RGFGwniAQWELERKWAFVDASPQPGEPIMVTGDYDLGALIARIEFAIRK-YNAQRVSMDSLGAIFSH-LSDSAQVRSDL 156
Cdd:pfam13481 92 RAAG---ADLDLPARLLFLSLVESLPLFFLDRGGPLLDADVDALEAALEEvEDPDLVVIDPLARALGGdENSNSDVGRLV 168
|
170
....*....|....*..
gi 495552294 157 FRLASALRELGVTAIMT 173
Cdd:pfam13481 169 KALDRLARRTGATVLLV 185
|
|
| PRK06067 |
PRK06067 |
flagellar accessory protein FlaH; Validated |
25-243 |
2.11e-05 |
|
flagellar accessory protein FlaH; Validated
Pssm-ID: 180381 Cd Length: 234 Bit Score: 45.73 E-value: 2.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 25 EGGLPKGRATLVAGTAGSSKTVFACQFLAEGIKRGENGVFVTFEEPPKALRRNMRGFGWNIAQWELerkWAFVDASPQPG 104
Cdd:PRK06067 19 GGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFL---WGYLRIFPLNT 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 105 EPIMVTGDYDLGALIARIEFaIRKYNAQRVSMDSLgAIFSHLSDSAQVrSDLFRLASALRELGVTAIMTaerTQEYGdis 184
Cdd:PRK06067 96 EGFEWNSTLANKLLELIIEF-IKSKREDVIIIDSL-TIFATYAEEDDI-LNFLTEAKNLVDLGKTILIT---LHPYA--- 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 495552294 185 rFgVEEF------VADNVVILRNVLADEKRRRTIEILKYRGTDHQKGE-YPFTIVPGRGVVIIPLS 243
Cdd:PRK06067 167 -F-SEELlsrirsICDVYLKLRAEQIGGRYVKVLEVVKLRGARKTTGNiISFDVDPAFGIKIIPLS 230
|
|
| Rad51 |
pfam08423 |
Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ... |
246-288 |
6.88e-05 |
|
Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ATPase RecA protein.
Pssm-ID: 462471 [Multi-domain] Cd Length: 255 Bit Score: 44.60 E-value: 6.88e-05
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 495552294 246 VLEQKSSNIRITSGSHELDRMCGGGFFRDSIILVSGATGTGKT 288
Cdd:pfam08423 9 LHQRRSELIQITTGSKELDKLLGGGIETGSITEIFGEFRTGKT 51
|
|
| PTZ00035 |
PTZ00035 |
Rad51 protein; Provisional |
246-288 |
5.55e-04 |
|
Rad51 protein; Provisional
Pssm-ID: 185407 [Multi-domain] Cd Length: 337 Bit Score: 42.29 E-value: 5.55e-04
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 495552294 246 VLEQKSSNIRITSGSHELDRMCGGGFFRDSIILVSGATGTGKT 288
Cdd:PTZ00035 90 YLEARKNIIRITTGSTQLDKLLGGGIETGSITELFGEFRTGKT 132
|
|
| RecA-like_superfamily |
cd01120 |
RecA-like_NTPases; RecA-like NTPases. This superfamily includes the NTP binding domain of F1 ... |
34-183 |
7.53e-04 |
|
RecA-like_NTPases; RecA-like NTPases. This superfamily includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410865 [Multi-domain] Cd Length: 119 Bit Score: 39.41 E-value: 7.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 34 TLVAGTAGSSKTVFACQFLAEGIKRGENGVFVTFeeppkalrrnmrgfgwniaqwelerkwafvdaspqpgepimvtgdy 113
Cdd:cd01120 1 ILITGPPGSGKTTLLLQFAEQALLSDEPVIFISF---------------------------------------------- 34
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 495552294 114 dLGALIARIEFAIRKYNAQRVSMDSLGAIFSHLSD--SAQVRSDLFRLASALRELGVTAIMTAERTQEYGDI 183
Cdd:cd01120 35 -LDTILEAIEDLIEEKKLDIIIIDSLSSLARASQGdrSSELLEDLAKLLRAARNTGITVIATIHSDKFDIDR 105
|
|
| FlaH |
cd19475 |
flagellar accessory protein FlaH; Flagellar accessory protein FlaH is part of the motor of the ... |
256-376 |
7.59e-04 |
|
flagellar accessory protein FlaH; Flagellar accessory protein FlaH is part of the motor of the archaellum membrane-anchored archaeal motility structure, together with FlaX and FlaI. FlaH forms a hexameric ring, and binds ATP which is essential for its interaction with FlaI and for archaellum assembly.
Pssm-ID: 410883 Cd Length: 220 Bit Score: 41.05 E-value: 7.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495552294 256 ITSGSHELDRMCGGGFFRDSIILVSGATGTGKTLMVTEFMAGGVVNDERCLIFAFEESREQLFRNATGWGVDFEEMEKQG 335
Cdd:cd19475 1 ISLGRDDLDKRLGGGIPYPSSIMIEGEESTGKSVLSQRLVYGFLQNDYSGYYISTQQTTKEFLKQMKSLKYDINKKLLRG 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 495552294 336 KLKVVCRYP---ETTGLENHLINMKETIETFKPNRVAVDSLSAL 376
Cdd:cd19475 81 KLLYIPVYPlifDNSLKDKFLKKIVNTRAFYEKDFIIFDSLSIL 124
|
|
| recomb_radA |
TIGR02236 |
DNA repair and recombination protein RadA; This family consists exclusively of archaeal RadA ... |
246-288 |
1.59e-03 |
|
DNA repair and recombination protein RadA; This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 131290 [Multi-domain] Cd Length: 310 Bit Score: 40.50 E-value: 1.59e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 495552294 246 VLEQKSSNIRITSGSHELDRMCGGGFFRDSIILVSGATGTGKT 288
Cdd:TIGR02236 67 VLERRKTIGKITTGSKELDELLGGGIETQAITEVFGEFGSGKT 109
|
|
| PLN03186 |
PLN03186 |
DNA repair protein RAD51 homolog; Provisional |
239-288 |
2.15e-03 |
|
DNA repair protein RAD51 homolog; Provisional
Pssm-ID: 178728 [Multi-domain] Cd Length: 342 Bit Score: 40.10 E-value: 2.15e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 495552294 239 IIPL----SAIVLEQKSSNIRITSGSHELDRMCGGGFFRDSIILVSGATGTGKT 288
Cdd:PLN03186 84 LVPLgfttASQLHAQRQEIIQITTGSRELDKILEGGIETGSITEIYGEFRTGKT 137
|
|
| RecA |
cd00983 |
recombinase A; RecA is a bacterial enzyme which has roles in homologous recombination, DNA ... |
10-65 |
9.58e-03 |
|
recombinase A; RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Pssm-ID: 410863 [Multi-domain] Cd Length: 235 Bit Score: 37.92 E-value: 9.58e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 495552294 10 IEKLETAIPGFDF-LSEGGLPKGRATLVAGTAGSSKTVFACQFLAEGIKRGENGVFV 65
Cdd:cd00983 2 VEVIPTGSLSLDIaLGIGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKLGGTAAFI 58
|
|
| |
