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Conserved domains on  [gi|495256396|ref|WP_007981151|]
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MULTISPECIES: YbdD/YjiX family protein [Pseudomonas]

Protein Classification

YbdD/YjiX family protein( domain architecture ID 10006762)

YbdD/YjiX family protein might be an uncharacterized selenoprotein, similar to Escherichia coli YbdD and YijX

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YbdD COG2879
Uncharacterized short protein YbdD, DUF466 family [Function unknown];
1-66 4.42e-23

Uncharacterized short protein YbdD, DUF466 family [Function unknown];


:

Pssm-ID: 442126  Cd Length: 64  Bit Score: 82.25  E-value: 4.42e-23
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 495256396  1 MFRKLQQVARMFSQSARLMVGVPEYDNYVAQMARNRPGEPVMSYEMFFRERQEARFGRGkcNTRCC 66
Cdd:COG2879   1 MLARLRRALRRLRQTARLMVGVPDYDRYVAHMRRHHPDQPPMTEREFFRERQDARYGGP--GGRCC 64
 
Name Accession Description Interval E-value
YbdD COG2879
Uncharacterized short protein YbdD, DUF466 family [Function unknown];
1-66 4.42e-23

Uncharacterized short protein YbdD, DUF466 family [Function unknown];


Pssm-ID: 442126  Cd Length: 64  Bit Score: 82.25  E-value: 4.42e-23
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 495256396  1 MFRKLQQVARMFSQSARLMVGVPEYDNYVAQMARNRPGEPVMSYEMFFRERQEARFGRGkcNTRCC 66
Cdd:COG2879   1 MLARLRRALRRLRQTARLMVGVPDYDRYVAHMRRHHPDQPPMTEREFFRERQDARYGGP--GGRCC 64
Sel_put pfam04328
Selenoprotein, putative; This entry includes a group of putative selenoproteins from ...
 7-66 2.76e-20

Selenoprotein, putative; This entry includes a group of putative selenoproteins from Proteobacteria, Actinobacteria and Firmicutes. The invariant cysteine at the C terminus is encoded by a TGA Sec codon in some Epsilonproteobacteria, suggesting a redox activity for the protein. Some members of this family have been suggested to be required for pyruvate transport in diverse bacteria, along with a CstA-like transporter found adjacent in the genome (see Supplementary note 5 in.)


Pssm-ID: 427871  Cd Length: 58  Bit Score: 75.31  E-value: 2.76e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 495256396   7 QVARMFSQSARLMVGVPEYDNYVAQMARNRPGEPVMSYEMFFRERQEARFGRGkcNTRCC 66
Cdd:pfam04328  1 RALRRVRQYARLMVGVPDYDRYVAHMRRHHPDKPPMSEREFFRERQDARYGGP--GGRCC 58
 
Name Accession Description Interval E-value
YbdD COG2879
Uncharacterized short protein YbdD, DUF466 family [Function unknown];
1-66 4.42e-23

Uncharacterized short protein YbdD, DUF466 family [Function unknown];


Pssm-ID: 442126  Cd Length: 64  Bit Score: 82.25  E-value: 4.42e-23
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 495256396  1 MFRKLQQVARMFSQSARLMVGVPEYDNYVAQMARNRPGEPVMSYEMFFRERQEARFGRGkcNTRCC 66
Cdd:COG2879   1 MLARLRRALRRLRQTARLMVGVPDYDRYVAHMRRHHPDQPPMTEREFFRERQDARYGGP--GGRCC 64
Sel_put pfam04328
Selenoprotein, putative; This entry includes a group of putative selenoproteins from ...
 7-66 2.76e-20

Selenoprotein, putative; This entry includes a group of putative selenoproteins from Proteobacteria, Actinobacteria and Firmicutes. The invariant cysteine at the C terminus is encoded by a TGA Sec codon in some Epsilonproteobacteria, suggesting a redox activity for the protein. Some members of this family have been suggested to be required for pyruvate transport in diverse bacteria, along with a CstA-like transporter found adjacent in the genome (see Supplementary note 5 in.)


Pssm-ID: 427871  Cd Length: 58  Bit Score: 75.31  E-value: 2.76e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 495256396   7 QVARMFSQSARLMVGVPEYDNYVAQMARNRPGEPVMSYEMFFRERQEARFGRGkcNTRCC 66
Cdd:pfam04328  1 RALRRVRQYARLMVGVPDYDRYVAHMRRHHPDKPPMSEREFFRERQDARYGGP--GGRCC 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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