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Conserved domains on  [gi|495011856|ref|WP_007737868|]
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dodecin [Halococcus thailandensis]

Protein Classification

dodecin family protein( domain architecture ID 10538147)

dodecin family protein is a small flavin-binding protein that may function as a storage protein that sequesters various flavins and other cofactors, thereby protecting the cell against undesirable reactions mediated by the free cofactors

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
dodecin_Halo NF041389
dodecin;
1-64 3.77e-28

dodecin;


:

Pssm-ID: 469280  Cd Length: 65  Bit Score: 95.41  E-value: 3.77e-28
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 495011856  1 MVFKKIRLIGRSNESFENAVDDAVDRAEETLDNLMWVSVENQSVELARA-EREYQVEIEVAFELD 64
Cdd:NF041389  1 MVFKKITLIGTSEESFEAAVDDAIDRAEETLDNVHWAEVEELGVEIASVdGREYQAEVEVAFELE 65
 
Name Accession Description Interval E-value
dodecin_Halo NF041389
dodecin;
1-64 3.77e-28

dodecin;


Pssm-ID: 469280  Cd Length: 65  Bit Score: 95.41  E-value: 3.77e-28
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 495011856  1 MVFKKIRLIGRSNESFENAVDDAVDRAEETLDNLMWVSVENQSVELARA-EREYQVEIEVAFELD 64
Cdd:NF041389  1 MVFKKITLIGTSEESFEAAVDDAIDRAEETLDNVHWAEVEELGVEIASVdGREYQAEVEVAFELE 65
COG3360 COG3360
Flavin-binding protein dodecin [General function prediction only];
1-65 4.30e-19

Flavin-binding protein dodecin [General function prediction only];


Pssm-ID: 442588  Cd Length: 68  Bit Score: 72.42  E-value: 4.30e-19
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 495011856  1 MVFKKIRLIGRSNESFENAVDDAVDRAEETLDNLMWVSVENQSVELARAE-REYQVEIEVAFELDE 65
Cdd:COG3360   3 HVYKVIELVGSSPKSWEDAVQNAIARASKTLRNIRWFEVVEQRGHVEDGKiAEYQVNLKVGFRLED 68
Dodecin pfam07311
Dodecin; Dodecin is a flavin-binding protein,found in several bacteria and few archaea and ...
 2-62 3.01e-15

Dodecin; Dodecin is a flavin-binding protein,found in several bacteria and few archaea and represents a stand-alone version of the SHS2 domain. It most closely resembles the SHS2 domains of FtsA and Rpb7p, and represents a single domain small-molecule binding form.


Pssm-ID: 462142  Cd Length: 62  Bit Score: 62.77  E-value: 3.01e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 495011856   2 VFKKIRLIGRSNESFENAVDDAVDRAEETLDNLMWVSVENQSVELARAE-REYQVEIEVAFE 62
Cdd:pfam07311  1 VYKVIELVGSSPKSWEDAIQNAIARASKTLRNIRWFEVVEQRGHVEDGKiAHYQVTLKVGFR 62
 
Name Accession Description Interval E-value
dodecin_Halo NF041389
dodecin;
1-64 3.77e-28

dodecin;


Pssm-ID: 469280  Cd Length: 65  Bit Score: 95.41  E-value: 3.77e-28
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 495011856  1 MVFKKIRLIGRSNESFENAVDDAVDRAEETLDNLMWVSVENQSVELARA-EREYQVEIEVAFELD 64
Cdd:NF041389  1 MVFKKITLIGTSEESFEAAVDDAIDRAEETLDNVHWAEVEELGVEIASVdGREYQAEVEVAFELE 65
COG3360 COG3360
Flavin-binding protein dodecin [General function prediction only];
1-65 4.30e-19

Flavin-binding protein dodecin [General function prediction only];


Pssm-ID: 442588  Cd Length: 68  Bit Score: 72.42  E-value: 4.30e-19
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 495011856  1 MVFKKIRLIGRSNESFENAVDDAVDRAEETLDNLMWVSVENQSVELARAE-REYQVEIEVAFELDE 65
Cdd:COG3360   3 HVYKVIELVGSSPKSWEDAVQNAIARASKTLRNIRWFEVVEQRGHVEDGKiAEYQVNLKVGFRLED 68
Dodecin pfam07311
Dodecin; Dodecin is a flavin-binding protein,found in several bacteria and few archaea and ...
 2-62 3.01e-15

Dodecin; Dodecin is a flavin-binding protein,found in several bacteria and few archaea and represents a stand-alone version of the SHS2 domain. It most closely resembles the SHS2 domains of FtsA and Rpb7p, and represents a single domain small-molecule binding form.


Pssm-ID: 462142  Cd Length: 62  Bit Score: 62.77  E-value: 3.01e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 495011856   2 VFKKIRLIGRSNESFENAVDDAVDRAEETLDNLMWVSVENQSVELARAE-REYQVEIEVAFE 62
Cdd:pfam07311  1 VYKVIELVGSSPKSWEDAIQNAIARASKTLRNIRWFEVVEQRGHVEDGKiAHYQVTLKVGFR 62
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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