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Conserved domains on  [gi|494914211|ref|WP_007640249|]
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glycine zipper 2TM domain-containing protein [Paraglaciecola psychrophila]

Protein Classification

SlyB family protein( domain architecture ID 10006953)

SlyB family protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
SlyB COG3133
Outer membrane lipoprotein SlyB [Cell wall/membrane/envelope biogenesis];
3-154 1.79e-37

Outer membrane lipoprotein SlyB [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442367  Cd Length: 152  Bit Score: 125.32  E-value: 1.79e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494914211   3 ALLVCFILMAG--HISQATADYNRNQAVPVDKVLFGKVTSARQITetelTQDRNQGWKTFGGALIGGSIGNQFGSGSGRA 80
Cdd:COG3133    8 AALLAALLLAGcaNSSYSGDVYSRGQARQVQTVEYGTVVSVRPVT----IQGSNSGLGTVGGAVLGGVAGSQVGGGRGRA 83
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 494914211  81 LSTILGAMLGSSIANDSHARVKHVtiQLVELMISIDNDGEYMVVQDFDPSmlFHTQDKIRMIYlSNGSVRIDKQ 154
Cdd:COG3133   84 LATVAGAVAGGVAGNAIEKGVTRT--QGVEITVRLDNGETIAVVQEADPQ--FRVGQRVRVVG-GGGTTRVSPR 152
 
Name Accession Description Interval E-value
SlyB COG3133
Outer membrane lipoprotein SlyB [Cell wall/membrane/envelope biogenesis];
3-154 1.79e-37

Outer membrane lipoprotein SlyB [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442367  Cd Length: 152  Bit Score: 125.32  E-value: 1.79e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494914211   3 ALLVCFILMAG--HISQATADYNRNQAVPVDKVLFGKVTSARQITetelTQDRNQGWKTFGGALIGGSIGNQFGSGSGRA 80
Cdd:COG3133    8 AALLAALLLAGcaNSSYSGDVYSRGQARQVQTVEYGTVVSVRPVT----IQGSNSGLGTVGGAVLGGVAGSQVGGGRGRA 83
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 494914211  81 LSTILGAMLGSSIANDSHARVKHVtiQLVELMISIDNDGEYMVVQDFDPSmlFHTQDKIRMIYlSNGSVRIDKQ 154
Cdd:COG3133   84 LATVAGAVAGGVAGNAIEKGVTRT--QGVEITVRLDNGETIAVVQEADPQ--FRVGQRVRVVG-GGGTTRVSPR 152
PRK11280 PRK11280
hypothetical protein; Provisional
35-90 7.62e-09

hypothetical protein; Provisional


Pssm-ID: 183072 [Multi-domain]  Cd Length: 170  Bit Score: 51.55  E-value: 7.62e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 494914211  35 FGKVTSARQITETELT----------------QDRNQGWKTFGGALIGGSIGNQFGSGSGRALSTILGAMLG 90
Cdd:PRK11280  28 YAQVLSATPIKETVKTprqecrdvtvthrrpvQDENRIAGSVLGAVAGGVLGHQFGGGRGKDVATVAGALGG 99
Rick_17kDa_Anti pfam05433
Glycine zipper 2TM domain; This family includes a putative two transmembrane alpha-helical ...
59-95 1.38e-03

Glycine zipper 2TM domain; This family includes a putative two transmembrane alpha-helical region that contains glycine zipper motifs. This family includes several Rickettsia genus specific 17 kDa surface antigen proteins.


Pssm-ID: 428470 [Multi-domain]  Cd Length: 43  Bit Score: 34.74  E-value: 1.38e-03
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 494914211   59 TFGGALIGGSIGNQFGSGS-GRALSTILGAMLGSSIAN 95
Cdd:pfam05433   3 ALVGAAAGGVAGAAIGGGGnGRVLGAVIGAAAGAVAGN 40
 
Name Accession Description Interval E-value
SlyB COG3133
Outer membrane lipoprotein SlyB [Cell wall/membrane/envelope biogenesis];
3-154 1.79e-37

Outer membrane lipoprotein SlyB [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442367  Cd Length: 152  Bit Score: 125.32  E-value: 1.79e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494914211   3 ALLVCFILMAG--HISQATADYNRNQAVPVDKVLFGKVTSARQITetelTQDRNQGWKTFGGALIGGSIGNQFGSGSGRA 80
Cdd:COG3133    8 AALLAALLLAGcaNSSYSGDVYSRGQARQVQTVEYGTVVSVRPVT----IQGSNSGLGTVGGAVLGGVAGSQVGGGRGRA 83
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 494914211  81 LSTILGAMLGSSIANDSHARVKHVtiQLVELMISIDNDGEYMVVQDFDPSmlFHTQDKIRMIYlSNGSVRIDKQ 154
Cdd:COG3133   84 LATVAGAVAGGVAGNAIEKGVTRT--QGVEITVRLDNGETIAVVQEADPQ--FRVGQRVRVVG-GGGTTRVSPR 152
YcfJ COG3134
Uncharacterized conserved protein YcfJ, contains glycine zipper 2TM domain [Function unknown];
1-96 7.65e-15

Uncharacterized conserved protein YcfJ, contains glycine zipper 2TM domain [Function unknown];


Pssm-ID: 442368 [Multi-domain]  Cd Length: 176  Bit Score: 67.62  E-value: 7.65e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494914211   1 MKALLVCFILMAGHISQATADYNRNQAVPvDKVLFGKVTSARQITETELT----------------QDRNQGWKTFGGAL 64
Cdd:COG3134    1 MKKSLLVGAVLAALAAAGAAAAAGYAAAD-SFPDYARVVSVTPIYETVRTprqecwdetvterapvQDGNSIAGTVIGAI 79
                         90       100       110
                 ....*....|....*....|....*....|..
gi 494914211  65 IGGSIGNQFGSGSGRALSTILGAMLGSSIAND 96
Cdd:COG3134   80 AGGVLGNQVGGGSGRKAATAAGAVAGGYAGNQ 111
PRK11280 PRK11280
hypothetical protein; Provisional
35-90 7.62e-09

hypothetical protein; Provisional


Pssm-ID: 183072 [Multi-domain]  Cd Length: 170  Bit Score: 51.55  E-value: 7.62e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 494914211  35 FGKVTSARQITETELT----------------QDRNQGWKTFGGALIGGSIGNQFGSGSGRALSTILGAMLG 90
Cdd:PRK11280  28 YAQVLSATPIKETVKTprqecrdvtvthrrpvQDENRIAGSVLGAVAGGVLGHQFGGGRGKDVATVAGALGG 99
Rick_17kDa_Anti pfam05433
Glycine zipper 2TM domain; This family includes a putative two transmembrane alpha-helical ...
59-95 1.38e-03

Glycine zipper 2TM domain; This family includes a putative two transmembrane alpha-helical region that contains glycine zipper motifs. This family includes several Rickettsia genus specific 17 kDa surface antigen proteins.


Pssm-ID: 428470 [Multi-domain]  Cd Length: 43  Bit Score: 34.74  E-value: 1.38e-03
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 494914211   59 TFGGALIGGSIGNQFGSGS-GRALSTILGAMLGSSIAN 95
Cdd:pfam05433   3 ALVGAAAGGVAGAAIGGGGnGRVLGAVIGAAAGAVAGN 40
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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