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Conserved domains on  [gi|494834834|ref|WP_007560934|]
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MULTISPECIES: L-rhamnose mutarotase [Bacteroidaceae]

Protein Classification

L-rhamnose mutarotase( domain architecture ID 10007127)

L-rhamnose mutarotase, a glycosyl hydrolase that converts the monosaccharide L-rhamnopyranose from the alpha to the beta stereoisomer

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
RhaM COG3254
L-rhamnose mutarotase [Cell wall/membrane/envelope biogenesis];
16-125 1.13e-36

L-rhamnose mutarotase [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442485  Cd Length: 104  Bit Score: 120.65  E-value: 1.13e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494834834  16 KRYCQTLSLRdnPELIEAYRKAHSkeESWPEIRAGIREVGILEMEIYILGSKLFMIVETPlnfDWDKAMAKLATLPRQAE 95
Cdd:COG3254    1 KRYAFVMDLK--PGLIAEYKRRHA--AIWPELLAALKEAGIRNYSIFLDGNLLFGYMEVD---DFEAAMAALAADPVNQR 73
                         90       100       110
                 ....*....|....*....|....*....|
gi 494834834  96 WEEYVAKFQQCAEGATSDEKWQMMERMFYL 125
Cdd:COG3254   74 WWALMADIQETLPDAKPSEKWVPLEEVFHL 103
 
Name Accession Description Interval E-value
RhaM COG3254
L-rhamnose mutarotase [Cell wall/membrane/envelope biogenesis];
16-125 1.13e-36

L-rhamnose mutarotase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442485  Cd Length: 104  Bit Score: 120.65  E-value: 1.13e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494834834  16 KRYCQTLSLRdnPELIEAYRKAHSkeESWPEIRAGIREVGILEMEIYILGSKLFMIVETPlnfDWDKAMAKLATLPRQAE 95
Cdd:COG3254    1 KRYAFVMDLK--PGLIAEYKRRHA--AIWPELLAALKEAGIRNYSIFLDGNLLFGYMEVD---DFEAAMAALAADPVNQR 73
                         90       100       110
                 ....*....|....*....|....*....|
gi 494834834  96 WEEYVAKFQQCAEGATSDEKWQMMERMFYL 125
Cdd:COG3254   74 WWALMADIQETLPDAKPSEKWVPLEEVFHL 103
rhaM pfam05336
L-rhamnose mutarotase; This family contains L-rhamnose mutarotase which is a glycosyl ...
17-124 1.35e-34

L-rhamnose mutarotase; This family contains L-rhamnose mutarotase which is a glycosyl hydrolase that converts the monosaccharide L-rhamnopyranose from the alpha to the beta stereoisomer. In Escherichia coli this enzyme is the product of the rhaM gene (also known as yiiL). The tertiary structure has been solved, in complex with L-rhamnose, and the catalytic mechanism determined. His22 is the proton donor. The enzyme naturally exists as a dimer.


Pssm-ID: 428428  Cd Length: 100  Bit Score: 115.29  E-value: 1.35e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494834834   17 RYCQTLSLRdnPELIEAYRKAHskEESWPEIRAGIREVGILEMEIY-ILGSKLFMIVETPlnfDWDKAMAKLATLPRQAE 95
Cdd:pfam05336   1 RYAFTLDLK--PELIEEYKRRH--AEVWPEVLAALREAGIRNYSIFlREGNRLFMYMETG---DDAADAALAAANPVVQE 73
                          90       100
                  ....*....|....*....|....*....
gi 494834834   96 WEEYVAKFQQCAEGATSDEKwqMMERMFY 124
Cdd:pfam05336  74 WWALMADFQEANPDASPGEK--PLEEVFH 100
 
Name Accession Description Interval E-value
RhaM COG3254
L-rhamnose mutarotase [Cell wall/membrane/envelope biogenesis];
16-125 1.13e-36

L-rhamnose mutarotase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442485  Cd Length: 104  Bit Score: 120.65  E-value: 1.13e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494834834  16 KRYCQTLSLRdnPELIEAYRKAHSkeESWPEIRAGIREVGILEMEIYILGSKLFMIVETPlnfDWDKAMAKLATLPRQAE 95
Cdd:COG3254    1 KRYAFVMDLK--PGLIAEYKRRHA--AIWPELLAALKEAGIRNYSIFLDGNLLFGYMEVD---DFEAAMAALAADPVNQR 73
                         90       100       110
                 ....*....|....*....|....*....|
gi 494834834  96 WEEYVAKFQQCAEGATSDEKWQMMERMFYL 125
Cdd:COG3254   74 WWALMADIQETLPDAKPSEKWVPLEEVFHL 103
rhaM pfam05336
L-rhamnose mutarotase; This family contains L-rhamnose mutarotase which is a glycosyl ...
17-124 1.35e-34

L-rhamnose mutarotase; This family contains L-rhamnose mutarotase which is a glycosyl hydrolase that converts the monosaccharide L-rhamnopyranose from the alpha to the beta stereoisomer. In Escherichia coli this enzyme is the product of the rhaM gene (also known as yiiL). The tertiary structure has been solved, in complex with L-rhamnose, and the catalytic mechanism determined. His22 is the proton donor. The enzyme naturally exists as a dimer.


Pssm-ID: 428428  Cd Length: 100  Bit Score: 115.29  E-value: 1.35e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494834834   17 RYCQTLSLRdnPELIEAYRKAHskEESWPEIRAGIREVGILEMEIY-ILGSKLFMIVETPlnfDWDKAMAKLATLPRQAE 95
Cdd:pfam05336   1 RYAFTLDLK--PELIEEYKRRH--AEVWPEVLAALREAGIRNYSIFlREGNRLFMYMETG---DDAADAALAAANPVVQE 73
                          90       100
                  ....*....|....*....|....*....
gi 494834834   96 WEEYVAKFQQCAEGATSDEKwqMMERMFY 124
Cdd:pfam05336  74 WWALMADFQEANPDASPGEK--PLEEVFH 100
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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