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Conserved domains on  [gi|493800803|ref|WP_006748716|]
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hypothetical protein [Thioalkalivibrio paradoxus]

Protein Classification

StbC1 family protein( domain architecture ID 10008716)

StbC1 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
StbC1 COG4691
Plasmid stability protein StbC1, contains ribbon-helix-helix domain [Defense mechanisms];
3-80 2.43e-18

Plasmid stability protein StbC1, contains ribbon-helix-helix domain [Defense mechanisms];


:

Pssm-ID: 443726  Cd Length: 79  Bit Score: 71.47  E-value: 2.43e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493800803  3 QVIVRNLENDLKDALKRRAQRHGCSMEEEVRQILRRAVNENSEAlPNLGSRIAKRFAGIGL-ETPLPELHGQEI-DPVAF 80
Cdd:COG4691   1 TLTIRNLDDEVKRRLKVRAAQHGRSMEAEVRAILRAALSPPPRS-PGLGEALRARFAEAGGtDLELPPGRDEAPrEPPSF 79
 
Name Accession Description Interval E-value
StbC1 COG4691
Plasmid stability protein StbC1, contains ribbon-helix-helix domain [Defense mechanisms];
3-80 2.43e-18

Plasmid stability protein StbC1, contains ribbon-helix-helix domain [Defense mechanisms];


Pssm-ID: 443726  Cd Length: 79  Bit Score: 71.47  E-value: 2.43e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493800803  3 QVIVRNLENDLKDALKRRAQRHGCSMEEEVRQILRRAVNENSEAlPNLGSRIAKRFAGIGL-ETPLPELHGQEI-DPVAF 80
Cdd:COG4691   1 TLTIRNLDDEVKRRLKVRAAQHGRSMEAEVRAILRAALSPPPRS-PGLGEALRARFAEAGGtDLELPPGRDEAPrEPPSF 79
PRK13982 PRK13982
bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; ...
 1-48 3.05e-10

bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional


Pssm-ID: 172484 [Multi-domain]  Cd Length: 475  Bit Score: 54.37  E-value: 3.05e-10
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 493800803   1 MAQVIVRNLENDLKDALKRRAQRHGCSMEEEVRQILRRAVNENSEALP 48
Cdd:PRK13982   1 MASLTIRKLDDAIKAELRQRAAQNGRSMEEEVRVILRDATTPRHGPAA 48
 
Name Accession Description Interval E-value
StbC1 COG4691
Plasmid stability protein StbC1, contains ribbon-helix-helix domain [Defense mechanisms];
3-80 2.43e-18

Plasmid stability protein StbC1, contains ribbon-helix-helix domain [Defense mechanisms];


Pssm-ID: 443726  Cd Length: 79  Bit Score: 71.47  E-value: 2.43e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493800803  3 QVIVRNLENDLKDALKRRAQRHGCSMEEEVRQILRRAVNENSEAlPNLGSRIAKRFAGIGL-ETPLPELHGQEI-DPVAF 80
Cdd:COG4691   1 TLTIRNLDDEVKRRLKVRAAQHGRSMEAEVRAILRAALSPPPRS-PGLGEALRARFAEAGGtDLELPPGRDEAPrEPPSF 79
PRK13982 PRK13982
bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; ...
 1-48 3.05e-10

bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional


Pssm-ID: 172484 [Multi-domain]  Cd Length: 475  Bit Score: 54.37  E-value: 3.05e-10
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 493800803   1 MAQVIVRNLENDLKDALKRRAQRHGCSMEEEVRQILRRAVNENSEALP 48
Cdd:PRK13982   1 MASLTIRKLDDAIKAELRQRAAQNGRSMEEEVRVILRDATTPRHGPAA 48
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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