|
Name |
Accession |
Description |
Interval |
E-value |
| COG4637 |
COG4637 |
Predicted ATPase [General function prediction only]; |
1-419 |
2.21e-78 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443675 [Multi-domain] Cd Length: 371 Bit Score: 247.15 E-value: 2.21e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493800175 1 MFTRIQALRFRCLRSIDQELGRFTVLVGPNASGKTTFLDVVALLGDLMRNGgkvADTVLERSRDFQRLLWRGEGS---SF 77
Cdd:COG4637 1 MITRIRIKNFKSLRDLELPLGPLTVLIGANGSGKSNLLDALRFLSDAARGG---LQDALARRGGLEELLWRGPRTitePI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493800175 78 QLAVEARLPEHvrkgmaepyrhfTRGRYEIAIGLDAESNLLGLDHEVLWllngsestrlgqaelfpsppappasiFLRSG 157
Cdd:COG4637 78 RLELEFAEEDE------------RDLRYELELGLPEPGGRPEVKEERLW--------------------------LKRGS 119
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493800175 158 KGRKLIVSNKRGGNANyvpdgkktyQPSFRLGRETAAMANIpADRDSFRAAPWFRDLLvNGIQSLTLNSQAIRQPSPPGL 237
Cdd:COG4637 120 GGRPFLDFRPKGRAVG---------GEPERLDSPESLLSQL-GDPERFPELRALREAL-RSWRFYDFHPAPLRQPQPAGR 188
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493800175 238 GRRFQPNGSNLPWVVAELHK-DPDRFGQWLEHVRTALPDIEDIQSIERPEDRhRYLVIHYEGG-AEVPSWLASDGTLRLL 315
Cdd:COG4637 189 TPVLAPDGSNLAAVLATLREtHPERFERILEALRDAFPGFEDIEVEPDEDGR-VLLEFREKGLdRPFPARELSDGTLRFL 267
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493800175 316 ALTILPYLRDFDGVILVEEPENGIHPRAIETVLQSLASIY-DGQVLLATHSPVALNMLEPKDVLCFAKDASGATDIVAGH 394
Cdd:COG4637 268 ALLAALLSPRPPPLLCIEEPENGLHPDLLPALAELLREASeRTQVIVTTHSPALLDALEPEEVLVLEREDDGETRIRRLS 347
|
410 420
....*....|....*....|....*
gi 493800175 395 RHPaLRDWkTGEPDFGVLFAAGILS 419
Cdd:COG4637 348 DLE-LPEW-LEGYSLGELWARGLLG 370
|
|
| AAA_21 |
pfam13304 |
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ... |
23-370 |
1.18e-25 |
|
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.
Pssm-ID: 433102 [Multi-domain] Cd Length: 303 Bit Score: 105.93 E-value: 1.18e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493800175 23 FTVLVGPNASGKTTFLDVVALLGDLMRNGGKVADTvLERSRDFQRLLWRGEGSSFQLAVEARLPEHVRKGMaepyrhftR 102
Cdd:pfam13304 1 INVLIGPNGSGKSNLLEALRFLADFDALVIGLTDE-RSRNGGIGGIPSLLNGIDPKEPIEFEISEFLEDGV--------R 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493800175 103 GRYEIAIGLDAESNLLGLDHEVL---WLLNGSESTRLGQAELFPSPPAPPASIFLRSGKGRKLIVSNKRGGNANYVPDGK 179
Cdd:pfam13304 72 YRYGLDLEREDVEEKLSSKPTLLekrLLLREDSEEREPKFPPEAEELRLGLDVEERIELSLSELSDLISGLLLLSIISPL 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493800175 180 KTY-QPSFRLGRETAAMANIPADRDSFRAAPWFRDLLVNGIQSLTLNSQAIRQpsppglgrrfqpngsnlpwvvaelhkd 258
Cdd:pfam13304 152 SFLlLLDEGLLLEDWAVLDLAADLALFPDLKELLQRLVRGLKLADLNLSDLGE--------------------------- 204
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493800175 259 pdrfgqwlehvrtalpDIEDIQSIERPEDRHRYLVIHYEGGAEVPSWLASDGTLRLLAL-TILPYLRDFDGVILVEEPEN 337
Cdd:pfam13304 205 ----------------GIEKSLLVDDRLRERGLILLENGGGGELPAFELSDGTKRLLALlAALLSALPKGGLLLIDEPES 268
|
330 340 350
....*....|....*....|....*....|....*
gi 493800175 338 GIHPRAIETVLQSL--ASIYDGQVLLATHSPVALN 370
Cdd:pfam13304 269 GLHPKLLRRLLELLkeLSRNGAQLILTTHSPLLLD 303
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
4-44 |
1.59e-04 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 41.96 E-value: 1.59e-04
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 493800175 4 RIQALRFRCLR---SIDQELGRFTVLVGPNASGKTTFLDVVALL 44
Cdd:cd03227 1 KIVLGRFPSYFvpnDVTFGEGSLTIITGPNGSGKSTILDAIGLA 44
|
|
| recF |
PRK00064 |
recombination protein F; Reviewed |
1-45 |
1.13e-03 |
|
recombination protein F; Reviewed
Pssm-ID: 234608 [Multi-domain] Cd Length: 361 Bit Score: 40.91 E-value: 1.13e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 493800175 1 MF-TRIQALRFRCLRSIDQEL-GRFTVLVGPNASGKTTFLDVVALLG 45
Cdd:PRK00064 1 MYlTRLSLTDFRNYEELDLELsPGVNVLVGENGQGKTNLLEAIYLLA 47
|
|
| recf |
TIGR00611 |
recF protein; All proteins in this family for which functions are known are DNA binding ... |
3-45 |
1.47e-03 |
|
recF protein; All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273173 [Multi-domain] Cd Length: 365 Bit Score: 40.42 E-value: 1.47e-03
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 493800175 3 TRIQALRFRCLRSIDQELG-RFTVLVGPNASGKTTFLDVVALLG 45
Cdd:TIGR00611 4 SRLELTDFRNYDAVDLELSpGVNVIVGPNGQGKTNLLEAIYYLA 47
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| COG4637 |
COG4637 |
Predicted ATPase [General function prediction only]; |
1-419 |
2.21e-78 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443675 [Multi-domain] Cd Length: 371 Bit Score: 247.15 E-value: 2.21e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493800175 1 MFTRIQALRFRCLRSIDQELGRFTVLVGPNASGKTTFLDVVALLGDLMRNGgkvADTVLERSRDFQRLLWRGEGS---SF 77
Cdd:COG4637 1 MITRIRIKNFKSLRDLELPLGPLTVLIGANGSGKSNLLDALRFLSDAARGG---LQDALARRGGLEELLWRGPRTitePI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493800175 78 QLAVEARLPEHvrkgmaepyrhfTRGRYEIAIGLDAESNLLGLDHEVLWllngsestrlgqaelfpsppappasiFLRSG 157
Cdd:COG4637 78 RLELEFAEEDE------------RDLRYELELGLPEPGGRPEVKEERLW--------------------------LKRGS 119
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493800175 158 KGRKLIVSNKRGGNANyvpdgkktyQPSFRLGRETAAMANIpADRDSFRAAPWFRDLLvNGIQSLTLNSQAIRQPSPPGL 237
Cdd:COG4637 120 GGRPFLDFRPKGRAVG---------GEPERLDSPESLLSQL-GDPERFPELRALREAL-RSWRFYDFHPAPLRQPQPAGR 188
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493800175 238 GRRFQPNGSNLPWVVAELHK-DPDRFGQWLEHVRTALPDIEDIQSIERPEDRhRYLVIHYEGG-AEVPSWLASDGTLRLL 315
Cdd:COG4637 189 TPVLAPDGSNLAAVLATLREtHPERFERILEALRDAFPGFEDIEVEPDEDGR-VLLEFREKGLdRPFPARELSDGTLRFL 267
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493800175 316 ALTILPYLRDFDGVILVEEPENGIHPRAIETVLQSLASIY-DGQVLLATHSPVALNMLEPKDVLCFAKDASGATDIVAGH 394
Cdd:COG4637 268 ALLAALLSPRPPPLLCIEEPENGLHPDLLPALAELLREASeRTQVIVTTHSPALLDALEPEEVLVLEREDDGETRIRRLS 347
|
410 420
....*....|....*....|....*
gi 493800175 395 RHPaLRDWkTGEPDFGVLFAAGILS 419
Cdd:COG4637 348 DLE-LPEW-LEGYSLGELWARGLLG 370
|
|
| AAA_21 |
pfam13304 |
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ... |
23-370 |
1.18e-25 |
|
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.
Pssm-ID: 433102 [Multi-domain] Cd Length: 303 Bit Score: 105.93 E-value: 1.18e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493800175 23 FTVLVGPNASGKTTFLDVVALLGDLMRNGGKVADTvLERSRDFQRLLWRGEGSSFQLAVEARLPEHVRKGMaepyrhftR 102
Cdd:pfam13304 1 INVLIGPNGSGKSNLLEALRFLADFDALVIGLTDE-RSRNGGIGGIPSLLNGIDPKEPIEFEISEFLEDGV--------R 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493800175 103 GRYEIAIGLDAESNLLGLDHEVL---WLLNGSESTRLGQAELFPSPPAPPASIFLRSGKGRKLIVSNKRGGNANYVPDGK 179
Cdd:pfam13304 72 YRYGLDLEREDVEEKLSSKPTLLekrLLLREDSEEREPKFPPEAEELRLGLDVEERIELSLSELSDLISGLLLLSIISPL 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493800175 180 KTY-QPSFRLGRETAAMANIPADRDSFRAAPWFRDLLVNGIQSLTLNSQAIRQpsppglgrrfqpngsnlpwvvaelhkd 258
Cdd:pfam13304 152 SFLlLLDEGLLLEDWAVLDLAADLALFPDLKELLQRLVRGLKLADLNLSDLGE--------------------------- 204
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493800175 259 pdrfgqwlehvrtalpDIEDIQSIERPEDRHRYLVIHYEGGAEVPSWLASDGTLRLLAL-TILPYLRDFDGVILVEEPEN 337
Cdd:pfam13304 205 ----------------GIEKSLLVDDRLRERGLILLENGGGGELPAFELSDGTKRLLALlAALLSALPKGGLLLIDEPES 268
|
330 340 350
....*....|....*....|....*....|....*
gi 493800175 338 GIHPRAIETVLQSL--ASIYDGQVLLATHSPVALN 370
Cdd:pfam13304 269 GLHPKLLRRLLELLkeLSRNGAQLILTTHSPLLLD 303
|
|
| COG1106 |
COG1106 |
ATPase/GTPase, AAA15 family [General function prediction only]; |
1-390 |
6.27e-19 |
|
ATPase/GTPase, AAA15 family [General function prediction only];
Pssm-ID: 440723 [Multi-domain] Cd Length: 330 Bit Score: 87.02 E-value: 6.27e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493800175 1 MFTRIQALRFRCLR--------SIDQELGRFTVLVGPNASGKTTFLDVVALLGDLMRNGGKVADTVLERSRDFQRllWRG 72
Cdd:COG1106 1 MLISFSIENFRSFKdeltlsmvASGLRLLRVNLIYGANASGKSNLLEALYFLRNLVLNSSQPGDKLVEPFLLDSE--SKN 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493800175 73 EGSSFqlavearlpEHVrkgmaepyrhFTRG--RYEIAIGLDAESNLlgldHEVLWLLNgsestrlgqaelfpsppappa 150
Cdd:COG1106 79 EPSEF---------EIL----------FLLDgvRYEYGFELDKERII----SEWLYFLS--------------------- 114
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493800175 151 siflrsgkgrklivsnkrggnanyvpdgkktyqpsfrlgreTAAMANIPADRDSFRaapWFRdllvngiqsltlnSQAIR 230
Cdd:COG1106 115 -----------------------------------------TAAQLNVPLLSPLYD---WFD-------------NNISL 137
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493800175 231 QPSPPGLGRRFQPNGSNLPWVVAELhkdpdrfgqwlehvRTALPDIEDIQSIERPEDR---HRYLVIHYEGGAEVPSWLA 307
Cdd:COG1106 138 DTSSDGLTLLLKEDESLKEELLELL--------------KIADPGIEDIEVEEEEIEDlveRKLIFKHKGGNVPLPLSEE 203
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493800175 308 SDGTLRLLAL--TILPYLRDfDGVILVEEPENGIHPRAIETVLQSLASIY---DGQVLLATHSPVALNMLEP---KDVLC 379
Cdd:COG1106 204 SDGTKRLLALagALLDALAK-GGVLLIDEIEASLHPSLLRKLLKLFLDLAnknNAQLIFTTHSTELLDAFLEllrRDQIW 282
|
410
....*....|..
gi 493800175 380 FA-KDASGATDI 390
Cdd:COG1106 283 FVeKDKDGASEL 294
|
|
| YbjD |
COG3593 |
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM ... |
260-418 |
4.94e-17 |
|
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair];
Pssm-ID: 442812 [Multi-domain] Cd Length: 359 Bit Score: 81.97 E-value: 4.94e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493800175 260 DRFGQWLEHVRTALPDIEDIQSIE------RPEDRHRYLVIHYEGGAEVPSWLASDGTLRLLALTILPYLRDFDG----- 328
Cdd:COG3593 110 EALKALNELLSEYLKELLDGLDLElelsldELEDLLKSLSLRIEDGKELPLDRLGSGFQRLILLALLSALAELKRapanp 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493800175 329 VILVEEPENGIHPRAIETVLQSLASI--YDGQVLLATHSPVALNMLEPKDVLCFAKDASGAT-----DIVAGHRHPALRD 401
Cdd:COG3593 190 ILLIEEPEAHLHPQAQRRLLKLLKELseKPNQVIITTHSPHLLSEVPLENIRRLRRDSGGTTstkliDLDDEDLRKLLRY 269
|
170
....*....|....*..
gi 493800175 402 WKTGEPDFgvLFAAGIL 418
Cdd:COG3593 270 LGVTRSEL--LFARKVI 284
|
|
| COG3950 |
COG3950 |
Predicted ATP-binding protein involved in virulence [General function prediction only]; |
1-383 |
3.15e-08 |
|
Predicted ATP-binding protein involved in virulence [General function prediction only];
Pssm-ID: 443150 [Multi-domain] Cd Length: 276 Bit Score: 54.62 E-value: 3.15e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493800175 1 MFTRIQALRFRCLRSID---QELGRFTVLVGPNASGKTTFLDVVAllgdlmrnggkvadtvlersrdfqrllwrgegssf 77
Cdd:COG3950 2 RIKSLTIENFRGFEDLEidfDNPPRLTVLVGENGSGKTTLLEAIA----------------------------------- 46
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493800175 78 qlavearlpehvrkgmaepyrhftrgryeiaigldaesnllgldhevlWLLNGSEStrlgqaelfpsppappasiFLRSG 157
Cdd:COG3950 47 ------------------------------------------------LALSGLLS-------------------RLDDV 59
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493800175 158 KGRKLIVSNKRGGNANYVpdgkKTYQPSFRLGRETAAMANIPADRDSFRAAPWFRDLLvNGIQSLTLNSQAIRqpsppgl 237
Cdd:COG3950 60 KFRKLLIRNGEFGDSAKL----ILYYGTSRLLLDGPLKKLERLKEEYFSRLDGYDSLL-DEDSNLREFLEWLR------- 127
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493800175 238 grrfqpngsnlpWVVAELHKDPDR-FGQWLEHVRTA----LPDIEDIQsIERpeDRHRYLVIHyEGGAEVP-SWLaSDGT 311
Cdd:COG3950 128 ------------EYLEDLENKLSDeLDEKLEAVREAlnklLPDFKDIR-IDR--DPGRLVILD-KNGEELPlNQL-SDGE 190
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493800175 312 LRLLALTI------------LPYLRDFDGVILVEEPENGIHPRAIETVLQSLASIYDG-QVLLATHSPVALNMLEPKDVL 378
Cdd:COG3950 191 RSLLALVGdlarrlaelnpaLENPLEGEGIVLIDEIDLHLHPKWQRRILPDLRKIFPNiQFIVTTHSPLILSSLEDEEVI 270
|
....*
gi 493800175 379 CFAKD 383
Cdd:COG3950 271 VLERD 275
|
|
| COG4938 |
COG4938 |
Predicted ATPase [General function prediction only]; |
198-377 |
1.04e-05 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443965 [Multi-domain] Cd Length: 277 Bit Score: 46.89 E-value: 1.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493800175 198 IPADRDSFRaapwfrdllvngiqslTLNSQAIRQPSPPGlgrrfqPNGSNLPWVVAELHKDPDRFGQ---WLEHVRTALP 274
Cdd:COG4938 51 LPAERSGPA----------------RLYPSLVRELSDLG------SRGEYTADFLAELENLEILDDKskeLLEQVEEWLE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493800175 275 DIEDIQ-SIERPEDRHRYLVIHYEGGAEVPSWLASDGTLRLL-ALTILPYLRDFDGVILVEEPENGIHPRAIETVLQSLA 352
Cdd:COG4938 109 KIFPGKvEVDASSDLVRLVFRPSGNGKRIPLSNVGSGVSELLpILLALLSAAKPGSLLIIEEPEAHLHPKAQSALAELLA 188
|
170 180 190
....*....|....*....|....*....|....*..
gi 493800175 353 SI--YDGQVLLATHSP---------VALN-MLEPKDV 377
Cdd:COG4938 189 ELanSGVQVIIETHSDyilnglrnlIKEGkLLDPDDV 225
|
|
| AAA_15 |
pfam13175 |
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ... |
10-366 |
2.92e-05 |
|
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 433011 [Multi-domain] Cd Length: 392 Bit Score: 46.05 E-value: 2.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493800175 10 FRCLRSIDQELG-RFTVLVGPNASGKTTFLDvvALlgdlmrnggkvaDTVLERSRDFQRLLWRGEGSSFQLAVEArlpeh 88
Cdd:pfam13175 11 FRCLKDTEIDLDeDLTVLIGKNNSGKSSILE--AL------------DIFLNNKEKFFEDDFLVLYLKDVIKIDK----- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493800175 89 vrkgmaEPYRHFTRGRYEIAIGLDAESNLLGLDHEVLW--LLNGSESTRLGQAELFPSPPAPPASIFLRSGKGRKL---- 162
Cdd:pfam13175 72 ------EDLNIFENISFSIDIEIDVEFLLILFGYLEIKkkYLCLASKGKAKEYEKTLHPKGANKADLLLELKISDLkkyl 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493800175 163 ------IVSNKRGGNANYVPDGKKTYQ-PSFRLGRETAAMANIPADRDSFRAAPWFRDLLVNGIQSLTLNS-------QA 228
Cdd:pfam13175 146 kqfkiyIYNNYYLDEKKNVFDKKSKYElPSLKEEFLNSEKEEIKVDKEDLKKLINELEKSINYHENVLENLqikklliSA 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493800175 229 IR-------QPSPPGLGRRFQpngsnlpWVVAELHKDPDRFGQWLEHVRTALPDIED----------------IQSIERP 285
Cdd:pfam13175 226 DRnasdedsEKINSLLGALKQ-------RIFEEALQEELELTEKLKETQNKLKEIDKtlaeelknilfkkidkLKDFGYP 298
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493800175 286 EDRHRYLVIHYEGgAEVPSWLASDGTLRLLALTILPYL--RDFDG------VILVEEPENGIHPRA----IETvLQSLAS 353
Cdd:pfam13175 299 PFLNPEIEIKKDD-EDLPLNKNGSGVQRLILLIFFIAEaeRKEDEieeknvILAIEEPEAHLHPQAqrvlIKL-LKELAN 376
|
410
....*....|...
gi 493800175 354 IYDGQVLLATHSP 366
Cdd:pfam13175 377 DNKTQVIITTHSP 389
|
|
| COG4938 |
COG4938 |
Predicted ATPase [General function prediction only]; |
10-127 |
3.20e-05 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443965 [Multi-domain] Cd Length: 277 Bit Score: 45.34 E-value: 3.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493800175 10 FRCLRSIDQELGRFTVLVGPNASGKTTFLDVVALLGDLM-------RNGgkVADTVLERSRDFQRLLWRGEGSSFQLA-- 80
Cdd:COG4938 9 FGPFKEAELELKPLTLLIGPNGSGKSTLIQALLLLLQSNfiylpaeRSG--PARLYPSLVRELSDLGSRGEYTADFLAel 86
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 493800175 81 ----VEARLPEHVRKGMAEPYRHFTRGRYEIAIGLDAESNLLGLDHEVLWL 127
Cdd:COG4938 87 enleILDDKSKELLEQVEEWLEKIFPGKVEVDASSDLVRLVFRPSGNGKRI 137
|
|
| RecF |
COG1195 |
Recombinational DNA repair ATPase RecF [Replication, recombination and repair]; |
3-45 |
6.10e-05 |
|
Recombinational DNA repair ATPase RecF [Replication, recombination and repair];
Pssm-ID: 440808 [Multi-domain] Cd Length: 352 Bit Score: 44.76 E-value: 6.10e-05
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 493800175 3 TRIQALRFRCLRSIDQELG-RFTVLVGPNASGKTTFLDVVALLG 45
Cdd:COG1195 3 KRLSLTNFRNYESLELEFSpGINVLVGPNGQGKTNLLEAIYLLA 46
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
4-44 |
1.59e-04 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 41.96 E-value: 1.59e-04
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 493800175 4 RIQALRFRCLR---SIDQELGRFTVLVGPNASGKTTFLDVVALL 44
Cdd:cd03227 1 KIVLGRFPSYFvpnDVTFGEGSLTIITGPNGSGKSTILDAIGLA 44
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
21-64 |
3.34e-04 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 41.08 E-value: 3.34e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 493800175 21 GRFTVLVGPNASGKTTFLDVVALL-----GDLMRNGGKVADTVLERSRD 64
Cdd:cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLlkptsGEILIDGKDIAKLPLEELRR 73
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
13-54 |
4.79e-04 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 41.57 E-value: 4.79e-04
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 493800175 13 LRSIDQEL--GRFTVLVGPNASGKTTFLDvvALLGDLMRNGGKV 54
Cdd:COG1120 17 LDDVSLSLppGEVTALLGPNGSGKSTLLR--ALAGLLKPSSGEV 58
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
9-54 |
7.23e-04 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 40.53 E-value: 7.23e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 493800175 9 RFRCLRSIDQEL--GRFTVLVGPNASGKTTFLdvVALLGDLMRNGGKV 54
Cdd:cd03250 17 TSFTLKDINLEVpkGELVAIVGPVGSGKSSLL--SALLGELEKLSGSV 62
|
|
| recF |
PRK00064 |
recombination protein F; Reviewed |
1-45 |
1.13e-03 |
|
recombination protein F; Reviewed
Pssm-ID: 234608 [Multi-domain] Cd Length: 361 Bit Score: 40.91 E-value: 1.13e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 493800175 1 MF-TRIQALRFRCLRSIDQEL-GRFTVLVGPNASGKTTFLDVVALLG 45
Cdd:PRK00064 1 MYlTRLSLTDFRNYEELDLELsPGVNVLVGENGQGKTNLLEAIYLLA 47
|
|
| recf |
TIGR00611 |
recF protein; All proteins in this family for which functions are known are DNA binding ... |
3-45 |
1.47e-03 |
|
recF protein; All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273173 [Multi-domain] Cd Length: 365 Bit Score: 40.42 E-value: 1.47e-03
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 493800175 3 TRIQALRFRCLRSIDQELG-RFTVLVGPNASGKTTFLDVVALLG 45
Cdd:TIGR00611 4 SRLELTDFRNYDAVDLELSpGVNVIVGPNGQGKTNLLEAIYYLA 47
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
22-80 |
2.66e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 40.34 E-value: 2.66e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 493800175 22 RFTVLVGPNASGKTTFLDVVA-LLGDlmRNGGKVadtvleRSRDFQRLLWRGEGSSFQLA 80
Cdd:pfam02463 24 GFTAIVGPNGSGKSNILDAILfVLGE--RSAKSL------RSERLSDLIHSKSGAFVNSA 75
|
|
| AAA_23 |
pfam13476 |
AAA domain; |
10-39 |
4.30e-03 |
|
AAA domain;
Pssm-ID: 463890 [Multi-domain] Cd Length: 190 Bit Score: 38.25 E-value: 4.30e-03
10 20 30
....*....|....*....|....*....|.
gi 493800175 10 FRCLRSIDQELGR-FTVLVGPNASGKTTFLD 39
Cdd:pfam13476 6 FRSFRDQTIDFSKgLTLITGPNGSGKTTILD 36
|
|
| ABC_MutS_homologs |
cd03243 |
ATP-binding cassette domain of MutS homologs; The MutS protein initiates DNA mismatch repair ... |
15-44 |
6.11e-03 |
|
ATP-binding cassette domain of MutS homologs; The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange.
Pssm-ID: 213210 [Multi-domain] Cd Length: 202 Bit Score: 37.61 E-value: 6.11e-03
10 20 30
....*....|....*....|....*....|
gi 493800175 15 SIDQELGRFTVLVGPNASGKTTFLDVVALL 44
Cdd:cd03243 23 DINLGSGRLLLITGPNMGGKSTYLRSIGLA 52
|
|
| |
