NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|493416484|ref|WP_006372366|]
View 

nitroreductase family deazaflavin-dependent oxidoreductase [Gordonia polyisoprenivorans]

Protein Classification

nitroreductase family deazaflavin-dependent oxidoreductase( domain architecture ID 10513519)

nitroreductase family deazaflavin-dependent oxidoreductase similar to Mycobacterium tuberculosis deazaflavin-dependent nitroreductase and F420H(2)-dependent quinone reductase

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
F420H2_quin_red pfam04075
F420H(2)-dependent quinone reductase; This family of proteins is found in the genera ...
 12-143 4.60e-40

F420H(2)-dependent quinone reductase; This family of proteins is found in the genera Mycobacterium and Streptomyces. Member protein Rv3547 has been characterized as a deazaflavin-dependent nitroreductase. Rv1558 is an F420H(2)-dependent quinone reductase involved in oxidative stress protection.


:

Pssm-ID: 281995  Cd Length: 129  Bit Score: 131.03  E-value: 4.60e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493416484   12 LKAHQWIYQHSHGLIGRRLlMGNPTLLLHMTGRKSGQPRTTALTYARDDETYLVVASNGGSPRPPAWLANLKAIPDVEIQ 91
Cdd:pfam04075   2 YREHVARYRRTGGTVGRRL-PGVPVLLLTTTGRKTGQPRTTPLGGVRDGDSYLVVASKGGAPRHPGWYYNLKANPRVRVQ 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 493416484   92 VGRRHVPVTARaTYPDDPdYARRWDLVDDVNNGrYAQYQSKTTRPIAIVELT 143
Cdd:pfam04075  81 IGGRWLDGTAR-LAPDDE-RARLWQLPVLNSPG-YAVYQSGTDRPIPVVVLT 129
 
Name Accession Description Interval E-value
F420H2_quin_red pfam04075
F420H(2)-dependent quinone reductase; This family of proteins is found in the genera ...
 12-143 4.60e-40

F420H(2)-dependent quinone reductase; This family of proteins is found in the genera Mycobacterium and Streptomyces. Member protein Rv3547 has been characterized as a deazaflavin-dependent nitroreductase. Rv1558 is an F420H(2)-dependent quinone reductase involved in oxidative stress protection.


Pssm-ID: 281995  Cd Length: 129  Bit Score: 131.03  E-value: 4.60e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493416484   12 LKAHQWIYQHSHGLIGRRLlMGNPTLLLHMTGRKSGQPRTTALTYARDDETYLVVASNGGSPRPPAWLANLKAIPDVEIQ 91
Cdd:pfam04075   2 YREHVARYRRTGGTVGRRL-PGVPVLLLTTTGRKTGQPRTTPLGGVRDGDSYLVVASKGGAPRHPGWYYNLKANPRVRVQ 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 493416484   92 VGRRHVPVTARaTYPDDPdYARRWDLVDDVNNGrYAQYQSKTTRPIAIVELT 143
Cdd:pfam04075  81 IGGRWLDGTAR-LAPDDE-RARLWQLPVLNSPG-YAVYQSGTDRPIPVVVLT 129
hi_GC_TIGR00026 TIGR00026
deazaflavin-dependent oxidoreductase, nitroreductase family; This model represents a family of ...
 33-143 3.98e-31

deazaflavin-dependent oxidoreductase, nitroreductase family; This model represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces. Seven members are in Mycobacterium tuberculosis. Member protein Rv3547 has been characterized as a deazaflavin-dependent nitroreductase. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 211538  Cd Length: 113  Bit Score: 107.49  E-value: 3.98e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493416484   33 GNPTLLLHMTGRKSGQPRTTALTYARDDETYLVVASNGGSPRPPAWLANLKAIPDVEIQVGRRHVPVTARATYPDDPDya 112
Cdd:TIGR00026   6 GLPVLLLTTTGRKTGKPRTTPVYYVRHDPGVLVVASNGGAPRHPDWYKNLKANPRVRVRVGGKVFVATARLVSGDERA-- 83

                          90       100       110
                  ....*....|....*....|....*....|.
gi 493416484  113 RRWDLVDDVnNGRYAQYQSKTTRPIAIVELT 143
Cdd:TIGR00026  84 QLWAGVVRL-YPRYQRYQSRTDRPIPVVVLT 113
 
Name Accession Description Interval E-value
F420H2_quin_red pfam04075
F420H(2)-dependent quinone reductase; This family of proteins is found in the genera ...
 12-143 4.60e-40

F420H(2)-dependent quinone reductase; This family of proteins is found in the genera Mycobacterium and Streptomyces. Member protein Rv3547 has been characterized as a deazaflavin-dependent nitroreductase. Rv1558 is an F420H(2)-dependent quinone reductase involved in oxidative stress protection.


Pssm-ID: 281995  Cd Length: 129  Bit Score: 131.03  E-value: 4.60e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493416484   12 LKAHQWIYQHSHGLIGRRLlMGNPTLLLHMTGRKSGQPRTTALTYARDDETYLVVASNGGSPRPPAWLANLKAIPDVEIQ 91
Cdd:pfam04075   2 YREHVARYRRTGGTVGRRL-PGVPVLLLTTTGRKTGQPRTTPLGGVRDGDSYLVVASKGGAPRHPGWYYNLKANPRVRVQ 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 493416484   92 VGRRHVPVTARaTYPDDPdYARRWDLVDDVNNGrYAQYQSKTTRPIAIVELT 143
Cdd:pfam04075  81 IGGRWLDGTAR-LAPDDE-RARLWQLPVLNSPG-YAVYQSGTDRPIPVVVLT 129
hi_GC_TIGR00026 TIGR00026
deazaflavin-dependent oxidoreductase, nitroreductase family; This model represents a family of ...
 33-143 3.98e-31

deazaflavin-dependent oxidoreductase, nitroreductase family; This model represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces. Seven members are in Mycobacterium tuberculosis. Member protein Rv3547 has been characterized as a deazaflavin-dependent nitroreductase. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 211538  Cd Length: 113  Bit Score: 107.49  E-value: 3.98e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493416484   33 GNPTLLLHMTGRKSGQPRTTALTYARDDETYLVVASNGGSPRPPAWLANLKAIPDVEIQVGRRHVPVTARATYPDDPDya 112
Cdd:TIGR00026   6 GLPVLLLTTTGRKTGKPRTTPVYYVRHDPGVLVVASNGGAPRHPDWYKNLKANPRVRVRVGGKVFVATARLVSGDERA-- 83

                          90       100       110
                  ....*....|....*....|....*....|.
gi 493416484  113 RRWDLVDDVnNGRYAQYQSKTTRPIAIVELT 143
Cdd:TIGR00026  84 QLWAGVVRL-YPRYQRYQSRTDRPIPVVVLT 113
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH