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Conserved domains on  [gi|493203783|ref|WP_006191946|]
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methionine ABC transporter ATP-binding protein [Staphylococcus aureus]

Protein Classification

methionine ABC transporter ATP-binding protein( domain architecture ID 11438975)

methionine ABC transporter ATP-binding protein similar to the ATPase domain of MetN, an ABC-type transporter that is involved in methionine transport

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
AbcC COG1135
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
1-340 0e+00

ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];


:

Pssm-ID: 440750 [Multi-domain]  Cd Length: 339  Bit Score: 513.09  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRDI 80
Cdd:COG1135    1 MIELENLSKTFPTKGGPVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTALSERELRAA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 KKDIGMIFQHFNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPK 160
Cdd:COG1135   81 RRKIGMIFQHFNLLSSRTVAENVALPLEIAGVPKAEIRKRVAELLELVGLSDKADAYPSQLSGGQKQRVGIARALANNPK 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 161 ILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPKTTIAQNF 240
Cdd:COG1135  161 VLLCDEATSALDPETTRSILDLLKDINRELGLTIVLITHEMDVVRRICDRVAVLENGRIVEQGPVLDVFANPQSELTRRF 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 241 VSTVIQTEPSTSLIRRLNDEQVGDfKDYKIFVEETQVTQPIINDLIQICGREVKILFSSMSEIQGNTVCYMWLRFNIDQQ 320
Cdd:COG1135  241 LPTVLNDELPEELLARLREAAGGG-RLVRLTFVGESADEPLLSELARRFGVDVNILSGGIEEIQGTPVGRLIVELEGDDA 319
                        330       340
                 ....*....|....*....|
gi 493203783 321 FDDTAInQYFKEKNIQFEEV 340
Cdd:COG1135  320 AIDAAL-AYLREQGVVVEVL 338
 
Name Accession Description Interval E-value
AbcC COG1135
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
1-340 0e+00

ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];


Pssm-ID: 440750 [Multi-domain]  Cd Length: 339  Bit Score: 513.09  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRDI 80
Cdd:COG1135    1 MIELENLSKTFPTKGGPVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTALSERELRAA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 KKDIGMIFQHFNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPK 160
Cdd:COG1135   81 RRKIGMIFQHFNLLSSRTVAENVALPLEIAGVPKAEIRKRVAELLELVGLSDKADAYPSQLSGGQKQRVGIARALANNPK 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 161 ILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPKTTIAQNF 240
Cdd:COG1135  161 VLLCDEATSALDPETTRSILDLLKDINRELGLTIVLITHEMDVVRRICDRVAVLENGRIVEQGPVLDVFANPQSELTRRF 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 241 VSTVIQTEPSTSLIRRLNDEQVGDfKDYKIFVEETQVTQPIINDLIQICGREVKILFSSMSEIQGNTVCYMWLRFNIDQQ 320
Cdd:COG1135  241 LPTVLNDELPEELLARLREAAGGG-RLVRLTFVGESADEPLLSELARRFGVDVNILSGGIEEIQGTPVGRLIVELEGDDA 319
                        330       340
                 ....*....|....*....|
gi 493203783 321 FDDTAInQYFKEKNIQFEEV 340
Cdd:COG1135  320 AIDAAL-AYLREQGVVVEVL 338
metN PRK11153
DL-methionine transporter ATP-binding subunit; Provisional
1-340 1.17e-158

DL-methionine transporter ATP-binding subunit; Provisional


Pssm-ID: 236863 [Multi-domain]  Cd Length: 343  Bit Score: 447.33  E-value: 1.17e-158
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRDI 80
Cdd:PRK11153   1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 KKDIGMIFQHFNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPK 160
Cdd:PRK11153  81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPK 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 161 ILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPKTTIAQNF 240
Cdd:PRK11153 161 VLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHPKHPLTREF 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 241 VSTVIQTEPSTSLIRRLNDEQVGDFKD-YKIFVEETQVTQPIINDLIQICGREVKILFSSMSEIQGNTVCYMWLRFNIDQ 319
Cdd:PRK11153 241 IQSTLHLDLPEDYLARLQAEPTTGSGPlLRLEFTGESVDAPLLSETARRFGVDFNILSGQIDYIGGVKFGSLLVELTGDP 320
                        330       340
                 ....*....|....*....|.
gi 493203783 320 QFDDTAInQYFKEKNIQFEEV 340
Cdd:PRK11153 321 GDIQAAI-AYLQEHGVKVEVL 340
ABC_MetN_methionine_transporter cd03258
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ...
1-233 1.41e-136

ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213225 [Multi-domain]  Cd Length: 233  Bit Score: 387.32  E-value: 1.41e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRDI 80
Cdd:cd03258    1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 KKDIGMIFQHFNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPK 160
Cdd:cd03258   81 RRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPK 160
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 493203783 161 ILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPK 233
Cdd:cd03258  161 VLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFANPQ 233
ABC_MetN TIGR02314
D-methionine ABC transporter, ATP-binding protein; Members of this family are the ATP-binding ...
1-338 1.70e-115

D-methionine ABC transporter, ATP-binding protein; Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.


Pssm-ID: 131367 [Multi-domain]  Cd Length: 343  Bit Score: 338.01  E-value: 1.70e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783    1 MIEFRQVSKSFHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRDI 80
Cdd:TIGR02314   1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   81 KKDIGMIFQHFNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPK 160
Cdd:TIGR02314  81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  161 ILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPKTTIAQNF 240
Cdd:TIGR02314 161 VLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLAQKF 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  241 VSTVIQTEPSTSLIRRLNDEQVGD-FKDYKIFVEETQVTQPIINDLIQICGREVKILFSSMSEIQGNTVCYMWLRFNIDQ 319
Cdd:TIGR02314 241 IRSTLHLSIPEDYQERLQATPFADsVPMVRLEFTGQTVDAPLLSQTARRFNVDNSILSSQMDYAGGVKFGIMLAEMHGTQ 320
                         330
                  ....*....|....*....
gi 493203783  320 QfDDTAINQYFKEKNIQFE 338
Cdd:TIGR02314 321 Q-DTQAAIAYLQEHNVKVE 338
ABC_tran pfam00005
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ...
21-169 4.33e-49

ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.


Pssm-ID: 394964 [Multi-domain]  Cd Length: 150  Bit Score: 161.28  E-value: 4.33e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   21 LKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDImnySDKMMRDIKKDIGMIFQHFNLLNSATVF 100
Cdd:pfam00005   1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDL---TDDERKSLRKEIGYVFQDPQLFPRLTVR 77
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 493203783  101 KNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPD----ELSGGQKQRVAIARALVTNPKILLCDEATS 169
Cdd:pfam00005  78 ENLRLGLLLKGLSKREKDARAEEALEKLGLGDLADRPVGerpgTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
ABC2_perm_RbbA NF033858
ribosome-associated ATPase/putative transporter RbbA;
20-224 1.76e-22

ribosome-associated ATPase/putative transporter RbbA;


Pssm-ID: 468210 [Multi-domain]  Cd Length: 907  Bit Score: 98.66  E-value: 1.76e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  20 ALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQV-----IVDGHDImnysdkmmrDIKKDIGMIFQHFNLL 94
Cdd:NF033858 281 AVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAwlfgqPVDAGDI---------ATRRRVGYMSQAFSLY 351
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  95 NSATVFKNvampLILSKK----SKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEATSA 170
Cdd:NF033858 352 GELTVRQN----LELHARlfhlPAAEIAARVAEMLERFDLADVADALPDSLPLGIRQRLSLAVAVIHKPELLILDEPTSG 427
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 493203783 171 LDPATTASILTLLKNVNQTFGITIMMITHEM----RvikdiCNRVAVMEKGQVVETGT 224
Cdd:NF033858 428 VDPVARDMFWRLLIELSREDGVTIFISTHFMneaeR-----CDRISLMHAGRVLASDT 480
GguA NF040905
sugar ABC transporter ATP-binding protein;
1-222 1.13e-15

sugar ABC transporter ATP-binding protein;


Pssm-ID: 468840 [Multi-domain]  Cd Length: 500  Bit Score: 77.52  E-value: 1.13e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKKqtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVN--HLEAASNGQVIVDGhDIMNYSDkmMR 78
Cdd:NF040905   1 ILEMRGITKTFPGVK----ALDDVNLSVREGEIHALCGENGAGKSTLMKVLSgvYPHGSYEGEILFDG-EVCRFKD--IR 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  79 DI-KKDIGMIFQHFNLLNSATVFKNVAMPLILSKK---SKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARA 154
Cdd:NF040905  74 DSeALGIVIIHQELALIPYLSIAENIFLGNERAKRgviDWNETNRRARELLAKVGLDESPDTLVTDIGVGKQQLVEIAKA 153
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 493203783 155 LVTNPKILLCDEATSALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQVVET 222
Cdd:NF040905 154 LSKDVKLLILDEPTAALNEEDSAALLDLLLELKAQ-GITSIIISHKLNEIRRVADSITVLRDGRTIET 220
NIL smart00930
This domain is found at the C-terminus of ABC transporter proteins involved in D-methionine ...
264-340 3.01e-11

This domain is found at the C-terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins; This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family.


Pssm-ID: 197998 [Multi-domain]  Cd Length: 76  Bit Score: 58.68  E-value: 3.01e-11
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 493203783   264 DFKDYKIFVEETQVTQPIINDLIQICGREVKILFSSMSEIQGNTVCYMWLRFNIDQQFDDTAInQYFKEKNIQFEEV 340
Cdd:smart00930   1 DGRLVRLTFTGESADEPLISQLAREFGVDVNILHGNIERIQGGPFGSLVVELTGDEEDIEAAL-AYLREQGVEVEVL 76
40850658_otr NF000106
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
113-228 6.71e-11

oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;


Pssm-ID: 411078 [Multi-domain]  Cd Length: 351  Bit Score: 62.83  E-value: 6.71e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 113 SKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEATSALDPATTASILTLLKNVNQTfGI 192
Cdd:NF000106 117 SRKDARARADELLERFSLTEAAGRAAAKYSGGMRRRLDLAASMIGRPAVLYLDEPTTGLDPRTRNEVWDEVRSMVRD-GA 195
                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 493203783 193 TIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEV 228
Cdd:NF000106 196 TVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDEL 231
ABC2_perm_RbbA NF033858
ribosome-associated ATPase/putative transporter RbbA;
20-173 1.31e-09

ribosome-associated ATPase/putative transporter RbbA;


Pssm-ID: 468210 [Multi-domain]  Cd Length: 907  Bit Score: 59.37  E-value: 1.31e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  20 ALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDImnySDKMMRD-IKKDIGMIFQHF--NLLNS 96
Cdd:NF033858  16 ALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRVEVLGGDM---ADARHRRaVCPRIAYMPQGLgkNLYPT 92
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  97 ATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLsdkkDQFPD----ELSGGQKQRVAIARALVTNPKILLCDEATSALD 172
Cdd:NF033858  93 LSVFENLDFFGRLFGQDAAERRRRIDELLRATGL----APFADrpagKLSGGMKQKLGLCCALIHDPDLLILDEPTTGVD 168

                 .
gi 493203783 173 P 173
Cdd:NF033858 169 P 169
GguA NF040905
sugar ABC transporter ATP-binding protein;
141-220 2.38e-05

sugar ABC transporter ATP-binding protein;


Pssm-ID: 468840 [Multi-domain]  Cd Length: 500  Bit Score: 45.94  E-value: 2.38e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 141 LSGGQKQRVAIARALVTNPKILLCDEATSALDPATTASILTLlknVNQ--TFGITIMMITHEMRVIKDICNRVAVMEKGQ 218
Cdd:NF040905 405 LSGGNQQKVVLSKWLFTDPDVLILDEPTRGIDVGAKYEIYTI---INElaAEGKGVIVISSELPELLGMCDRIYVMNEGR 481

                 ..
gi 493203783 219 VV 220
Cdd:NF040905 482 IT 483
 
Name Accession Description Interval E-value
AbcC COG1135
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
1-340 0e+00

ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];


Pssm-ID: 440750 [Multi-domain]  Cd Length: 339  Bit Score: 513.09  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRDI 80
Cdd:COG1135    1 MIELENLSKTFPTKGGPVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTALSERELRAA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 KKDIGMIFQHFNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPK 160
Cdd:COG1135   81 RRKIGMIFQHFNLLSSRTVAENVALPLEIAGVPKAEIRKRVAELLELVGLSDKADAYPSQLSGGQKQRVGIARALANNPK 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 161 ILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPKTTIAQNF 240
Cdd:COG1135  161 VLLCDEATSALDPETTRSILDLLKDINRELGLTIVLITHEMDVVRRICDRVAVLENGRIVEQGPVLDVFANPQSELTRRF 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 241 VSTVIQTEPSTSLIRRLNDEQVGDfKDYKIFVEETQVTQPIINDLIQICGREVKILFSSMSEIQGNTVCYMWLRFNIDQQ 320
Cdd:COG1135  241 LPTVLNDELPEELLARLREAAGGG-RLVRLTFVGESADEPLLSELARRFGVDVNILSGGIEEIQGTPVGRLIVELEGDDA 319
                        330       340
                 ....*....|....*....|
gi 493203783 321 FDDTAInQYFKEKNIQFEEV 340
Cdd:COG1135  320 AIDAAL-AYLREQGVVVEVL 338
metN PRK11153
DL-methionine transporter ATP-binding subunit; Provisional
1-340 1.17e-158

DL-methionine transporter ATP-binding subunit; Provisional


Pssm-ID: 236863 [Multi-domain]  Cd Length: 343  Bit Score: 447.33  E-value: 1.17e-158
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRDI 80
Cdd:PRK11153   1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 KKDIGMIFQHFNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPK 160
Cdd:PRK11153  81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPK 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 161 ILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPKTTIAQNF 240
Cdd:PRK11153 161 VLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHPKHPLTREF 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 241 VSTVIQTEPSTSLIRRLNDEQVGDFKD-YKIFVEETQVTQPIINDLIQICGREVKILFSSMSEIQGNTVCYMWLRFNIDQ 319
Cdd:PRK11153 241 IQSTLHLDLPEDYLARLQAEPTTGSGPlLRLEFTGESVDAPLLSETARRFGVDFNILSGQIDYIGGVKFGSLLVELTGDP 320
                        330       340
                 ....*....|....*....|.
gi 493203783 320 QFDDTAInQYFKEKNIQFEEV 340
Cdd:PRK11153 321 GDIQAAI-AYLQEHGVKVEVL 340
ABC_MetN_methionine_transporter cd03258
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ...
1-233 1.41e-136

ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213225 [Multi-domain]  Cd Length: 233  Bit Score: 387.32  E-value: 1.41e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRDI 80
Cdd:cd03258    1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 KKDIGMIFQHFNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPK 160
Cdd:cd03258   81 RRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPK 160
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 493203783 161 ILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPK 233
Cdd:cd03258  161 VLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFANPQ 233
ABC_MetN TIGR02314
D-methionine ABC transporter, ATP-binding protein; Members of this family are the ATP-binding ...
1-338 1.70e-115

D-methionine ABC transporter, ATP-binding protein; Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.


Pssm-ID: 131367 [Multi-domain]  Cd Length: 343  Bit Score: 338.01  E-value: 1.70e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783    1 MIEFRQVSKSFHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRDI 80
Cdd:TIGR02314   1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   81 KKDIGMIFQHFNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPK 160
Cdd:TIGR02314  81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  161 ILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPKTTIAQNF 240
Cdd:TIGR02314 161 VLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLAQKF 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  241 VSTVIQTEPSTSLIRRLNDEQVGD-FKDYKIFVEETQVTQPIINDLIQICGREVKILFSSMSEIQGNTVCYMWLRFNIDQ 319
Cdd:TIGR02314 241 IRSTLHLSIPEDYQERLQATPFADsVPMVRLEFTGQTVDAPLLSQTARRFNVDNSILSSQMDYAGGVKFGIMLAEMHGTQ 320
                         330
                  ....*....|....*....
gi 493203783  320 QfDDTAINQYFKEKNIQFE 338
Cdd:TIGR02314 321 Q-DTQAAIAYLQEHNVKVE 338
GlnQ COG1126
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ...
1-244 1.88e-96

ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];


Pssm-ID: 440743 [Multi-domain]  Cd Length: 239  Bit Score: 285.73  E-value: 1.88e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKKqtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDImNYSDKMMRDI 80
Cdd:COG1126    1 MIEIENLHKSFGDLE----VLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDL-TDSKKDINKL 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 KKDIGMIFQHFNLLNSATVFKNVAMPLILSKK-SKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNP 159
Cdd:COG1126   76 RRKVGMVFQQFNLFPHLTVLENVTLAPIKVKKmSKAEAEERAMELLERVGLADKADAYPAQLSGGQQQRVAIARALAMEP 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 160 KILLCDEATSALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPKTTIAQN 239
Cdd:COG1126  156 KVMLFDEPTSALDPELVGEVLDVMRDLAKE-GMTMVVVTHEMGFAREVADRVVFMDGGRIVEEGPPEEFFENPQHERTRA 234

                 ....*
gi 493203783 240 FVSTV 244
Cdd:COG1126  235 FLSKV 239
GsiA COG1123
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ...
1-233 6.27e-96

ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440740 [Multi-domain]  Cd Length: 514  Bit Score: 293.73  E-value: 6.27e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFH-KKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRD 79
Cdd:COG1123  260 LLEVRNLSKRYPvRGKGGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLTKLSRRSLRE 339
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  80 IKKDIGMIFQH-FNLLNSA-TVFKNVAMPL-ILSKKSKTEIKQRVTEMLEFVGLS-DKKDQFPDELSGGQKQRVAIARAL 155
Cdd:COG1123  340 LRRRVQMVFQDpYSSLNPRmTVGDIIAEPLrLHGLLSRAERRERVAELLERVGLPpDLADRYPHELSGGQRQRVAIARAL 419
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 493203783 156 VTNPKILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPK 233
Cdd:COG1123  420 ALEPKLLILDEPTSALDVSVQAQILNLLRDLQRELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEDGPTEEVFANPQ 497
LolD COG1136
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
1-221 3.10e-94

ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440751 [Multi-domain]  Cd Length: 227  Bit Score: 279.62  E-value: 3.10e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRDI 80
Cdd:COG1136    4 LLELRNLTKSYGTGEGEVTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDISSLSERELARL 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 -KKDIGMIFQHFNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNP 159
Cdd:COG1136   84 rRRHIGFVFQFFNLLPELTALENVALPLLLAGVSRKERRERARELLERVGLGDRLDHRPSQLSGGQQQRVAIARALVNRP 163
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 493203783 160 KILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRvIKDICNRVAVMEKGQVVE 221
Cdd:COG1136  164 KLILADEPTGNLDSKTGEEVLELLRELNRELGTTIVMVTHDPE-LAARADRVIRLRDGRIVS 224
MlaF COG1127
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ...
1-232 1.50e-86

ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440744 [Multi-domain]  Cd Length: 241  Bit Score: 260.68  E-value: 1.50e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKKqtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRDI 80
Cdd:COG1127    5 MIEVRNLTKSFGDRV----VLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITGLSEKELYEL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 KKDIGMIFQHFNLLNSATVFKNVAMPLI-LSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNP 159
Cdd:COG1127   81 RRRIGMLFQGGALFDSLTVFENVAFPLReHTDLSEAEIRELVLEKLELVGLPGAADKMPSELSGGMRKRVALARALALDP 160
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 493203783 160 KILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHP 232
Cdd:COG1127  161 EILLYDEPTAGLDPITSAVIDELIRELRDELGLTSVVVTHDLDSAFAIADRVAVLADGKIIAEGTPEELLASD 233
DppD COG0444
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ...
1-233 2.75e-86

ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440213 [Multi-domain]  Cd Length: 320  Bit Score: 262.68  E-value: 2.75e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLE---AASNGQVIVDGHDIMNYSDKMM 77
Cdd:COG0444    1 LLEVRNLKVYFPTRRGVVKAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLpppGITSGEILFDGEDLLKLSEKEL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  78 RDIK-KDIGMIFQH-FNLLN-SATVFKNVAMPLILSKK-SKTEIKQRVTEMLEFVGLSDKK---DQFPDELSGGQKQRVA 150
Cdd:COG0444   81 RKIRgREIQMIFQDpMTSLNpVMTVGDQIAEPLRIHGGlSKAEARERAIELLERVGLPDPErrlDRYPHELSGGMRQRVM 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 151 IARALVTNPKILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFS 230
Cdd:COG0444  161 IARALALEPKLLIADEPTTALDVTIQAQILNLLKDLQRELGLAILFITHDLGVVAEIADRVAVMYAGRIVEEGPVEELFE 240

                 ...
gi 493203783 231 HPK 233
Cdd:COG0444  241 NPR 243
FtsE COG2884
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
1-221 4.38e-86

Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442130 [Multi-domain]  Cd Length: 223  Bit Score: 258.83  E-value: 4.38e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKKQtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRDI 80
Cdd:COG2884    1 MIRFENVSKRYPGGRE---ALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRLKRREIPYL 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 KKDIGMIFQHFNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPK 160
Cdd:COG2884   78 RRRIGVVFQDFRLLPDRTVYENVALPLRVTGKSRKEIRRRVREVLDLVGLSDKAKALPHELSGGEQQRVAIARALVNRPE 157
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 493203783 161 ILLCDEATSALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQVVE 221
Cdd:COG2884  158 LLLADEPTGNLDPETSWEIMELLEEINRR-GTTVLIATHDLELVDRMPKRVLELEDGRLVR 217
ABC_MJ0796_LolCDE_FtsE cd03255
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ...
2-219 5.23e-86

ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.


Pssm-ID: 213222 [Multi-domain]  Cd Length: 218  Bit Score: 258.19  E-value: 5.23e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRDIK 81
Cdd:cd03255    1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 KD-IGMIFQHFNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPK 160
Cdd:cd03255   81 RRhIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPK 160
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 493203783 161 ILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKdICNRVAVMEKGQV 219
Cdd:cd03255  161 IILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218
ABC_NikE_OppD_transporters cd03257
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ...
1-223 1.24e-83

ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.


Pssm-ID: 213224 [Multi-domain]  Cd Length: 228  Bit Score: 252.81  E-value: 1.24e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRDI 80
Cdd:cd03257    1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 KKDIGMIFQH-FNLLN-SATVFKNVAMPLILSKK--SKTEIKQRVTEMLEFVGLSDK-KDQFPDELSGGQKQRVAIARAL 155
Cdd:cd03257   81 RKEIQMVFQDpMSSLNpRMTIGEQIAEPLRIHGKlsKKEARKEAVLLLLVGVGLPEEvLNRYPHELSGGQRQRVAIARAL 160
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 493203783 156 VTNPKILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETG 223
Cdd:cd03257  161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
DppF COG1124
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ...
1-241 2.45e-80

ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440741 [Multi-domain]  Cd Length: 248  Bit Score: 245.10  E-value: 2.45e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDImnySDKMMRDI 80
Cdd:COG1124    1 MLEVRNLSVSYGQGGRRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPV---TRRRRKAF 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 KKDIGMIFQH-FNLLNSA-TVFKNVAMPLILSKKskTEIKQRVTEMLEFVGLSDK-KDQFPDELSGGQKQRVAIARALVT 157
Cdd:COG1124   78 RRRVQMVFQDpYASLHPRhTVDRILAEPLRIHGL--PDREERIAELLEQVGLPPSfLDRYPHQLSGGQRQRVAIARALIL 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 158 NPKILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPKTTIA 237
Cdd:COG1124  156 EPELLLLDEPTSALDVSVQAEILNLLKDLREERGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELTVADLLAGPKHPYT 235

                 ....
gi 493203783 238 QNFV 241
Cdd:COG1124  236 RELL 239
EcfA2 COG1122
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ...
2-234 2.65e-80

Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];


Pssm-ID: 440739 [Multi-domain]  Cd Length: 230  Bit Score: 244.16  E-value: 2.65e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHKKKQtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDImnySDKMMRDIK 81
Cdd:COG1122    1 IELENLSFSYPGGTP---ALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDI---TKKNLRELR 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 KDIGMIFQH-FNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPK 160
Cdd:COG1122   75 RKVGLVFQNpDDQLFAPTVEEDVAFGPENLGLPREEIRERVEEALELVGLEHLADRPPHELSGGQKQRVAIAGVLAMEPE 154
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 493203783 161 ILLCDEATSALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPKT 234
Cdd:COG1122  155 VLVLDEPTAGLDPRGRRELLELLKRLNKE-GKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPREVFSDYEL 227
PhnC COG3638
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ...
1-220 1.16e-79

ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];


Pssm-ID: 442855 [Multi-domain]  Cd Length: 249  Bit Score: 243.43  E-value: 1.16e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKKQtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRDI 80
Cdd:COG3638    2 MLELRNLSKRYPGGTP---ALDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPTSGEILVDGQDVTALRGRALRRL 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 KKDIGMIFQHFNLLNSATVFKNV------AMPL---ILSKKSKTEiKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAI 151
Cdd:COG3638   79 RRRIGMIFQQFNLVPRLSVLTNVlagrlgRTSTwrsLLGLFPPED-RERALEALERVGLADKAYQRADQLSGGQQQRVAI 157
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 493203783 152 ARALVTNPKILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVV 220
Cdd:COG3638  158 ARALVQEPKLILADEPVASLDPKTARQVMDLLRRIAREDGITVVVNLHQVDLARRYADRIIGLRDGRVV 226
ABC_Org_Solvent_Resistant cd03261
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ...
2-232 6.26e-77

ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213228 [Multi-domain]  Cd Length: 235  Bit Score: 235.86  E-value: 6.26e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHKKkqTIdaLKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRDIK 81
Cdd:cd03261    1 IELRGLTKSFGGR--TV--LKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLR 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 KDIGMIFQHFNLLNSATVFKNVAMPLI-LSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPK 160
Cdd:cd03261   77 RRMGMLFQSGALFDSLTVFENVAFPLReHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPE 156
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 493203783 161 ILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHP 232
Cdd:cd03261  157 LLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRASD 228
GsiA COG1123
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ...
1-233 4.82e-74

ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440740 [Multi-domain]  Cd Length: 514  Bit Score: 237.49  E-value: 4.82e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKkkQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHL---EAASNGQVIVDGHDIMNYSDKMM 77
Cdd:COG1123    4 LLEVRDLSVRYPG--GDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLlphGGRISGEVLLDGRDLLELSEALR 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  78 RdikKDIGMIFQHF-NLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALV 156
Cdd:COG1123   82 G---RRIGMVFQDPmTQLNPVTVGDQIAEALENLGLSRAEARARVLELLEAVGLERRLDRYPHQLSGGQRQRVAIAMALA 158
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 493203783 157 TNPKILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPK 233
Cdd:COG1123  159 LDPDLLIADEPTTALDVTTQAEILDLLRELQRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEEILAAPQ 235
ABC_HisP_GlnQ cd03262
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ...
2-219 6.24e-74

ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.


Pssm-ID: 213229 [Multi-domain]  Cd Length: 213  Bit Score: 227.41  E-value: 6.24e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHKKKqtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDImNYSDKMMRDIK 81
Cdd:cd03262    1 IEIKNLHKSFGDFH----VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKL-TDDKKNINELR 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 KDIGMIFQHFNLLNSATVFKNVAMPLILSKK-SKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPK 160
Cdd:cd03262   76 QKVGMVFQQFNLFPHLTVLENITLAPIKVKGmSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPK 155
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 493203783 161 ILLCDEATSALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQV 219
Cdd:cd03262  156 VMLFDEPTSALDPELVGEVLDVMKDLAEE-GMTMVVVTHEMGFAREVADRVIFMDDGRI 213
TauB COG1116
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ...
1-229 2.10e-73

ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];


Pssm-ID: 440733 [Multi-domain]  Cd Length: 260  Bit Score: 227.67  E-value: 2.10e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDImnysdkmmRDI 80
Cdd:COG1116    7 ALELRGVSKRFPTGGGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPV--------TGP 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 KKDIGMIFQHFNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPK 160
Cdd:COG1116   79 GPDRGVVFQEPALLPWLTVLDNVALGLELRGVPKAERRERARELLELVGLAGFEDAYPHQLSGGMRQRVAIARALANDPE 158
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 493203783 161 ILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHemrvikDI------CNRVAVMEKGqvveTGTVKEVF 229
Cdd:COG1116  159 VLLMDEPFGALDALTRERLQDELLRLWQETGKTVLFVTH------DVdeavflADRVVVLSAR----PGRIVEEI 223
ABC_PhnC_transporter cd03256
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ...
2-228 2.67e-73

ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213223 [Multi-domain]  Cd Length: 241  Bit Score: 226.68  E-value: 2.67e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHKKKQtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRDIK 81
Cdd:cd03256    1 IEVENLSKTYPNGKK---ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLR 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 KDIGMIFQHFNLLNSATVFKNV------AMPL---ILSKKSKTEiKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIA 152
Cdd:cd03256   78 RQIGMIFQQFNLIERLSVLENVlsgrlgRRSTwrsLFGLFPKEE-KQRALAALERVGLLDKAYQRADQLSGGQQQRVAIA 156
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 493203783 153 RALVTNPKILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEV 228
Cdd:cd03256  157 RALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAEL 232
PotA COG3842
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ...
1-234 1.41e-72

ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];


Pssm-ID: 443052 [Multi-domain]  Cd Length: 353  Bit Score: 228.83  E-value: 1.41e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKKqtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGhdimnysdkmmRDI 80
Cdd:COG3842    5 ALELENVSKRYGDVT----ALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDG-----------RDV 69
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 ------KKDIGMIFQHFNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARA 154
Cdd:COG3842   70 tglppeKRNVGMVFQDYALFPHLTVAENVAFGLRMRGVPKAEIRARVAELLELVGLEGLADRYPHQLSGGQQQRVALARA 149
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 155 LVTNPKILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHemrvikD------ICNRVAVMEKGQVVETGTVKEV 228
Cdd:COG3842  150 LAPEPRVLLLDEPLSALDAKLREEMREELRRLQRELGITFIYVTH------DqeealaLADRIAVMNDGRIEQVGTPEEI 223

                 ....*.
gi 493203783 229 FSHPKT 234
Cdd:COG3842  224 YERPAT 229
ECF_ATPase_2 TIGR04521
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ...
2-233 1.53e-70

energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]


Pssm-ID: 275314 [Multi-domain]  Cd Length: 277  Bit Score: 220.79  E-value: 1.53e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783    2 IEFRQVSKSFHKKkqT---IDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMR 78
Cdd:TIGR04521   1 IKLKNVSYIYQPG--TpfeKKALDDVSLTIEDGEFVAIIGHTGSGKSTLIQHLNGLLKPTSGTVTIDGRDITAKKKKKLK 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   79 DIKKDIGMIFQhF--NLLNSATVFKNVAM-PLILsKKSKTEIKQRVTEMLEFVGLSDK-KDQFPDELSGGQKQRVAIARA 154
Cdd:TIGR04521  79 DLRKKVGLVFQ-FpeHQLFEETVYKDIAFgPKNL-GLSEEEAEERVKEALELVGLDEEyLERSPFELSGGQMRRVAIAGV 156
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 493203783  155 LVTNPKILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPK 233
Cdd:TIGR04521 157 LAMEPEVLILDEPTAGLDPKGRKEILDLFKRLHKEKGLTVILVTHSMEDVAEYADRVIVMHKGKIVLDGTPREVFSDVD 235
CcmA COG1131
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
2-228 2.07e-70

ABC-type multidrug transport system, ATPase component [Defense mechanisms];


Pssm-ID: 440746 [Multi-domain]  Cd Length: 236  Bit Score: 219.16  E-value: 2.07e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHKKKqtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSdkmmRDIK 81
Cdd:COG1131    1 IEVRGLTKRYGDKT----ALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVARDP----AEVR 72
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 KDIGMIFQHFNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKI 161
Cdd:COG1131   73 RRIGYVPQEPALYPDLTVRENLRFFARLYGLPRKEARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPEL 152
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 493203783 162 LLCDEATSALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEV 228
Cdd:COG1131  153 LILDEPTSGLDPEARRELWELLRELAAE-GKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDEL 218
AppF COG4608
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ...
11-233 4.20e-70

ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];


Pssm-ID: 443658 [Multi-domain]  Cd Length: 329  Bit Score: 221.53  E-value: 4.20e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  11 FHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRDIKKDIGMIFQH 90
Cdd:COG4608   24 FGRTVGVVKAVDGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEILFDGQDITGLSGRELRPLRRRMQMVFQD 103
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  91 -FNLLNS-ATVFKNVAMPLILSK-KSKTEIKQRVTEMLEFVGLS-DKKDQFPDELSGGQKQRVAIARALVTNPKILLCDE 166
Cdd:COG4608  104 pYASLNPrMTVGDIIAEPLRIHGlASKAERRERVAELLELVGLRpEHADRYPHEFSGGQRQRIGIARALALNPKLIVCDE 183
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 493203783 167 ATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPK 233
Cdd:COG4608  184 PVSALDVSIQAQVLNLLEDLQDELGLTYLFISHDLSVVRHISDRVAVMYLGKIVEIAPRDELYARPL 250
ABC_Carb_Solutes_like cd03259
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ...
2-223 2.96e-69

ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213226 [Multi-domain]  Cd Length: 213  Bit Score: 215.46  E-value: 2.96e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHKKkqtiDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNysdkmMRDIK 81
Cdd:cd03259    1 LELKGLSKTYGSV----RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTG-----VPPER 71
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 KDIGMIFQHFNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKI 161
Cdd:cd03259   72 RNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSL 151
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 493203783 162 LLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETG 223
Cdd:cd03259  152 LLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
ProV COG4175
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and ...
1-244 6.22e-69

ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism];


Pssm-ID: 443334 [Multi-domain]  Cd Length: 389  Bit Score: 220.36  E-value: 6.22e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSF-HKKKQTIDALK-------------------DVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNG 60
Cdd:COG4175    3 KIEVRNLYKIFgKRPERALKLLDqgkskdeilektgqtvgvnDASFDVEEGEIFVIMGLSGSGKSTLVRCLNRLIEPTAG 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  61 QVIVDGHDIMNYSDKMMRDI-KKDIGMIFQHFNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPD 139
Cdd:COG4175   83 EVLIDGEDITKLSKKELRELrRKKMSMVFQHFALLPHRTVLENVAFGLEIQGVPKAERRERAREALELVGLAGWEDSYPD 162
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 140 ELSGGQKQRVAIARALVTNPKILLCDEATSALDPAttasI--------LTLLKNVNQtfgiTIMMITHE----MRvikdI 207
Cdd:COG4175  163 ELSGGMQQRVGLARALATDPDILLMDEAFSALDPL----IrremqdelLELQAKLKK----TIVFITHDldeaLR----L 230
                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 493203783 208 CNRVAVMEKGQVVETGTVKEVFSHPKTTIAQNFVSTV 244
Cdd:COG4175  231 GDRIAIMKDGRIVQIGTPEEILTNPANDYVADFVEDV 267
ABC_Pro_Gly_Betaine cd03294
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ...
11-246 7.00e-69

ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213261 [Multi-domain]  Cd Length: 269  Bit Score: 216.36  E-value: 7.00e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  11 FHKKKQTIdALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRDI-KKDIGMIFQ 89
Cdd:cd03294   31 LKKTGQTV-GVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELrRKKISMVFQ 109
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  90 HFNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEATS 169
Cdd:cd03294  110 SFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFS 189
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 493203783 170 ALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPkttiAQNFVSTVIQ 246
Cdd:cd03294  190 ALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNP----ANDYVREFFR 262
ABC_phnC TIGR02315
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ...
1-231 8.45e-69

phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]


Pssm-ID: 131368 [Multi-domain]  Cd Length: 243  Bit Score: 215.24  E-value: 8.45e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783    1 MIEFRQVSKSFHKKKQtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRDI 80
Cdd:TIGR02315   1 MLEVENLSKVYPNGKQ---ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKL 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   81 KKDIGMIFQHFNLLNSATVFKNVAMPLILSKKS--------KTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIA 152
Cdd:TIGR02315  78 RRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTwrsllgrfSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIA 157
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 493203783  153 RALVTNPKILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSH 231
Cdd:TIGR02315 158 RALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSELDDE 236
ABC_PotA_N cd03300
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ...
2-241 1.06e-67

ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213267 [Multi-domain]  Cd Length: 232  Bit Score: 212.10  E-value: 1.06e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHKKKqtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKmmrdiK 81
Cdd:cd03300    1 IELENVSKFYGGFV----ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPH-----K 71
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 KDIGMIFQHFNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKI 161
Cdd:cd03300   72 RPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKV 151
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 162 LLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPKTTIAQNFV 241
Cdd:cd03300  152 LLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEPANRFVADFI 231
ABC_cobalt_CbiO_domain1 cd03225
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ...
3-218 6.48e-67

First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.


Pssm-ID: 213192 [Multi-domain]  Cd Length: 211  Bit Score: 209.25  E-value: 6.48e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   3 EFRQVSKSFHKKKQTidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDImnySDKMMRDIKK 82
Cdd:cd03225    1 ELKNLSFSYPDGARP--ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDL---TKLSLKELRR 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  83 DIGMIFQHFN--LLNSaTVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPK 160
Cdd:cd03225   76 KVGLVFQNPDdqFFGP-TVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPD 154
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 493203783 161 ILLCDEATSALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQ 218
Cdd:cd03225  155 ILLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDLDLLLELADRVIVLEDGK 211
ABC_Class3 cd03229
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ...
2-218 8.29e-67

ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213196 [Multi-domain]  Cd Length: 178  Bit Score: 207.81  E-value: 8.29e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHKKKqtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMmRDIK 81
Cdd:cd03229    1 LELKNVSKRYGQKT----VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDEL-PPLR 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 KDIGMIFQHFNLLNSATVFKNVAMPLilskkskteikqrvtemlefvglsdkkdqfpdelSGGQKQRVAIARALVTNPKI 161
Cdd:cd03229   76 RRIGMVFQDFALFPHLTVLENIALGL----------------------------------SGGQQQRVALARALAMDPDV 121
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 493203783 162 LLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQ 218
Cdd:cd03229  122 LLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
ABC_NrtD_SsuB_transporters cd03293
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ...
2-232 5.19e-66

ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213260 [Multi-domain]  Cd Length: 220  Bit Score: 207.32  E-value: 5.19e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGhdimnysdKMMRDIK 81
Cdd:cd03293    1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDG--------EPVTGPG 72
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 KDIGMIFQHFNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKI 161
Cdd:cd03293   73 PDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDV 152
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 493203783 162 LLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHemrvikDI------CNRVAVMEKGQvvetGTVKEVFSHP 232
Cdd:cd03293  153 LLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTH------DIdeavflADRVVVLSARP----GRIVAEVEVD 219
YejF COG4172
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ...
2-234 1.12e-65

ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 443332 [Multi-domain]  Cd Length: 533  Bit Score: 216.09  E-value: 1.12e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHKKK-------QTIDALKDVSFTVNHNDIFGVIGYSGAGKSTL----VRLVnhleaASNGQVIVDGHDIM 70
Cdd:COG4172  276 LEARDLKVWFPIKRglfrrtvGHVKAVDGVSLTLRRGETLGLVGESGSGKSTLglalLRLI-----PSEGEIRFDGQDLD 350
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  71 NYSDKMMRDIKKDIGMIFQH-FNLLNS-ATVFKNVAMPLIL--SKKSKTEIKQRVTEMLEFVGLS-DKKDQFPDELSGGQ 145
Cdd:COG4172  351 GLSRRALRPLRRRMQVVFQDpFGSLSPrMTVGQIIAEGLRVhgPGLSAAERRARVAEALEEVGLDpAARHRYPHEFSGGQ 430
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 146 KQRVAIARALVTNPKILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTV 225
Cdd:COG4172  431 RQRIAIARALILEPKLLVLDEPTSALDVSVQAQILDLLRDLQREHGLAYLFISHDLAVVRALAHRVMVMKDGKVVEQGPT 510

                 ....*....
gi 493203783 226 KEVFSHPKT 234
Cdd:COG4172  511 EQVFDAPQH 519
glnQ PRK09493
glutamine ABC transporter ATP-binding protein GlnQ;
1-244 2.81e-65

glutamine ABC transporter ATP-binding protein GlnQ;


Pssm-ID: 181906 [Multi-domain]  Cd Length: 240  Bit Score: 206.10  E-value: 2.81e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKkkqtIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDImNYSDKMMRDI 80
Cdd:PRK09493   1 MIEFKNVSKHFGP----TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKV-NDPKVDERLI 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 KKDIGMIFQHFNLLNSATVFKNVAM-PLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNP 159
Cdd:PRK09493  76 RQEAGMVFQQFYLFPHLTALENVMFgPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKP 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 160 KILLCDEATSALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPKTTIAQN 239
Cdd:PRK09493 156 KLMLFDEPTSALDPELRHEVLKVMQDLAEE-GMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNPPSQRLQE 234

                 ....*
gi 493203783 240 FVSTV 244
Cdd:PRK09493 235 FLQHV 239
CysA COG1118
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ...
2-234 3.89e-65

ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];


Pssm-ID: 440735 [Multi-domain]  Cd Length: 348  Bit Score: 209.23  E-value: 3.89e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHKKKqtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDImnYSDKMMRDik 81
Cdd:COG1118    3 IEVRNISKRFGSFT----LLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGRDL--FTNLPPRE-- 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 KDIGMIFQHFNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKI 161
Cdd:COG1118   75 RRVGFVFQHYALFPHMTVAENIAFGLRVRPPSKAEIRARVEELLELVQLEGLADRYPSQLSGGQRQRVALARALAVEPEV 154
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 493203783 162 LLCDEATSALDPATTASILTLLKNVNQTFGITIMMITH---E-MRVikdiCNRVAVMEKGQVVETGTVKEVFSHPKT 234
Cdd:COG1118  155 LLLDEPFGALDAKVRKELRRWLRRLHDELGGTTVFVTHdqeEaLEL----ADRVVVMNQGRIEQVGTPDEVYDRPAT 227
YejF COG4172
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ...
1-233 4.09e-65

ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 443332 [Multi-domain]  Cd Length: 533  Bit Score: 214.55  E-value: 4.09e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKS----TLVRLVNHLEAASNGQVIVDGHDIMNYSDKM 76
Cdd:COG4172    6 LLSVEDLSVAFGQGGGTVEAVKGVSFDIAAGETLALVGESGSGKSvtalSILRLLPDPAAHPSGSILFDGQDLLGLSERE 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  77 MRDIK-KDIGMIFQ---------HfnllnsaTVFKNVAMPLILSKK-SKTEIKQRVTEMLEFVGLSDKK---DQFPDELS 142
Cdd:COG4172   86 LRRIRgNRIAMIFQepmtslnplH-------TIGKQIAEVLRLHRGlSGAAARARALELLERVGIPDPErrlDAYPHQLS 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 143 GGQKQRVAIARALVTNPKILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVET 222
Cdd:COG4172  159 GGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKDLQRELGMALLLITHDLGVVRRFADRVAVMRQGEIVEQ 238
                        250
                 ....*....|.
gi 493203783 223 GTVKEVFSHPK 233
Cdd:COG4172  239 GPTAELFAAPQ 249
ABC_FtsE cd03292
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ...
2-219 6.81e-65

Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages


Pssm-ID: 213259 [Multi-domain]  Cd Length: 214  Bit Score: 204.18  E-value: 6.81e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFhkkKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRDIK 81
Cdd:cd03292    1 IEFINVTKTY---PNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLR 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 KDIGMIFQHFNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKI 161
Cdd:cd03292   78 RKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTI 157
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 493203783 162 LLCDEATSALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQV 219
Cdd:cd03292  158 LIADEPTGNLDPDTTWEIMNLLKKINKA-GTTVVVATHAKELVDTTRHRVIALERGKL 214
MalK COG3839
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ...
1-245 1.27e-64

ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];


Pssm-ID: 443050 [Multi-domain]  Cd Length: 352  Bit Score: 208.00  E-value: 1.27e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKKqtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDImnySDKMMRDi 80
Cdd:COG3839    3 SLELENVSKSYGGVE----ALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDV---TDLPPKD- 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 kKDIGMIFQHFNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPK 160
Cdd:COG3839   75 -RNIAMVFQSYALYPHMTVYENIAFPLKLRKVPKAEIDRRVREAAELLGLEDLLDRKPKQLSGGQRQRVALGRALVREPK 153
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 161 ILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHE----MRvikdICNRVAVMEKGQVVETGTVKEVFSHPKTTi 236
Cdd:COG3839  154 VFLLDEPLSNLDAKLRVEMRAEIKRLHRRLGTTTIYVTHDqveaMT----LADRIAVMNDGRIQQVGTPEELYDRPANL- 228

                 ....*....
gi 493203783 237 aqnFVSTVI 245
Cdd:COG3839  229 ---FVAGFI 234
ArtP COG4161
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
2-242 5.48e-64

ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];


Pssm-ID: 443326 [Multi-domain]  Cd Length: 242  Bit Score: 202.94  E-value: 5.48e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHkkkqTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDI---MNYSDKMMR 78
Cdd:COG4161    3 IQLKNINCFYG----SHQALFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGHQFdfsQKPSEKAIR 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  79 DIKKDIGMIFQHFNLLNSATVFKN-VAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVT 157
Cdd:COG4161   79 LLRQKVGMVFQQYNLWPHLTVMENlIEAPCKVLGLSKEQAREKAMKLLARLRLTDKADRFPLHLSGGQQQRVAIARALMM 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 158 NPKILLCDEATSALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTvKEVFSHPKTTIA 237
Cdd:COG4161  159 EPQVLLFDEPTAALDPEITAQVVEIIRELSQT-GITQVIVTHEVEFARKVASQVVYMEKGRIIEQGD-ASHFTQPQTEAF 236

                 ....*
gi 493203783 238 QNFVS 242
Cdd:COG4161  237 AHYLS 241
artP PRK11124
arginine transporter ATP-binding subunit; Provisional
20-242 3.79e-63

arginine transporter ATP-binding subunit; Provisional


Pssm-ID: 182980 [Multi-domain]  Cd Length: 242  Bit Score: 201.01  E-value: 3.79e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  20 ALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDI---MNYSDKMMRDIKKDIGMIFQHFNLLNS 96
Cdd:PRK11124  17 ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFdfsKTPSDKAIRELRRNVGMVFQQYNLWPH 96
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  97 ATVFKN-VAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEATSALDPAT 175
Cdd:PRK11124  97 LTVQQNlIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEI 176
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 493203783 176 TASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTvKEVFSHPKTTIAQNFVS 242
Cdd:PRK11124 177 TAQIVSIIRELAET-GITQVIVTHEVEVARKTASRVVYMENGHIVEQGD-ASCFTQPQTEAFKNYLS 241
ECF_ATPase_1 TIGR04520
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ...
2-231 1.07e-61

energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]


Pssm-ID: 275313 [Multi-domain]  Cd Length: 268  Bit Score: 198.04  E-value: 1.07e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783    2 IEFRQVSKSFHKkkQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNysDKMMRDIK 81
Cdd:TIGR04520   1 IEVENVSFSYPE--SEKPALKNVSLSIEKGEFVAIIGHNGSGKSTLAKLLNGLLLPTSGKVTVDGLDTLD--EENLWEIR 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   82 KDIGMIFQH-FNLLNSATVFKNVA-------MPLIlskksktEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIAR 153
Cdd:TIGR04520  77 KKVGMVFQNpDNQFVGATVEDDVAfglenlgVPRE-------EMRKRVDEALKLVGMEDFRDREPHLLSGGQKQRVAIAG 149
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 493203783  154 ALVTNPKILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEM-RVIKdiCNRVAVMEKGQVVETGTVKEVFSH 231
Cdd:TIGR04520 150 VLAMRPDIIILDEATSMLDPKGRKEVLETIRKLNKEEGITVISITHDMeEAVL--ADRVIVMNKGKIVAEGTPREIFSQ 226
ABC_PstB_phosphate_transporter cd03260
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ...
2-228 2.58e-61

ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).


Pssm-ID: 213227 [Multi-domain]  Cd Length: 227  Bit Score: 195.48  E-value: 2.58e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHKKKqtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHL-----EAASNGQVIVDGHDIMNYSDKM 76
Cdd:cd03260    1 IELRDLNVYYGDKH----ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLndlipGAPDEGEVLLDGKDIYDLDVDV 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  77 MRdIKKDIGMIFQHFNLLNsATVFKNVAMPL-ILSKKSKTEIKQRVTEMLEFVGLSD--KKDQFPDELSGGQKQRVAIAR 153
Cdd:cd03260   77 LE-LRRRVGMVFQKPNPFP-GSIYDNVAYGLrLHGIKLKEELDERVEEALRKAALWDevKDRLHALGLSGGQQQRLCLAR 154
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 493203783 154 ALVTNPKILLCDEATSALDPATTASILTLLKNVNQTfgITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEV 228
Cdd:cd03260  155 ALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
HisP COG4598
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism];
12-246 3.33e-61

ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism];


Pssm-ID: 443652 [Multi-domain]  Cd Length: 259  Bit Score: 196.17  E-value: 3.33e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  12 HKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDI---------MNYSD-KMMRDIK 81
Cdd:COG4598   15 HKSFGDLEVLKGVSLTARKGDVISIIGSSGSGKSTFLRCINLLETPDSGEIRVGGEEIrlkpdrdgeLVPADrRQLQRIR 94
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 KDIGMIFQHFNLLNSATVFKNV-AMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPK 160
Cdd:COG4598   95 TRLGMVFQSFNLWSHMTVLENViEAPVHVLGRPKAEAIERAEALLAKVGLADKRDAYPAHLSGGQQQRAAIARALAMEPE 174
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 161 ILLCDEATSALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPKTTIAQNF 240
Cdd:COG4598  175 VMLFDEPTSALDPELVGEVLKVMRDLAEE-GRTMLVVTHEMGFARDVSSHVVFLHQGRIEEQGPPAEVFGNPKSERLRQF 253

                 ....*.
gi 493203783 241 VSTVIQ 246
Cdd:COG4598  254 LSSSLK 259
LivG COG0411
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ...
1-233 4.03e-61

ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];


Pssm-ID: 440180 [Multi-domain]  Cd Length: 257  Bit Score: 196.03  E-value: 4.03e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFhkkkQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDImnySDKMMRDI 80
Cdd:COG0411    4 LLEVRGLTKRF----GGLVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDI---TGLPPHRI 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 -KKDIGMIFQHFNLLNSATVFKNVAM---------------PLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGG 144
Cdd:COG0411   77 aRLGIARTFQNPRLFPELTVLENVLVaaharlgrgllaallRLPRARREEREARERAEELLERVGLADRADEPAGNLSYG 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 145 QKQRVAIARALVTNPKILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGT 224
Cdd:COG0411  157 QQRRLEIARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRDERGITILLIEHDMDLVMGLADRIVVLDFGRVIAEGT 236

                 ....*....
gi 493203783 225 VKEVFSHPK 233
Cdd:COG0411  237 PAEVRADPR 245
ABC_Mj1267_LivG_branched cd03219
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ...
2-233 5.80e-61

ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).


Pssm-ID: 213186 [Multi-domain]  Cd Length: 236  Bit Score: 194.96  E-value: 5.80e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSF--HKkkqtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDImnySDKMMRD 79
Cdd:cd03219    1 LEVRGLTKRFggLV------ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDI---TGLPPHE 71
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  80 I-KKDIGMIFQHFNLLNSATVFKNVAMPLILSK----------KSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQR 148
Cdd:cd03219   72 IaRLGIGRTFQIPRLFPELTVLENVMVAAQARTgsglllararREEREARERAEELLERVGLADLADRPAGELSYGQQRR 151
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 149 VAIARALVTNPKILLCDEATSALDPATTASILTLLKNVNQtFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEV 228
Cdd:cd03219  152 LEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEV 230

                 ....*
gi 493203783 229 FSHPK 233
Cdd:cd03219  231 RNNPR 235
YbbA COG4181
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ...
1-224 2.98e-60

Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 443338 [Multi-domain]  Cd Length: 233  Bit Score: 193.03  E-value: 2.98e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYS-DKMMRD 79
Cdd:COG4181    8 IIELRGLTKTVGTGAGELTILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDLFALDeDARARL 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  80 IKKDIGMIFQHFNLLNSATVFKNVAMPLILskKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNP 159
Cdd:COG4181   88 RARHVGFVFQSFQLLPTLTALENVMLPLEL--AGRRDARARARALLERVGLGHRLDHYPAQLSGGEQQRVALARAFATEP 165
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 493203783 160 KILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDiCNRVAVMEKGQVVETGT 224
Cdd:COG4181  166 AILFADEPTGNLDAATGEQIIDLLFELNRERGTTLVLVTHDPALAAR-CDRVLRLRAGRLVEDTA 229
ABC_OpuCA_Osmoprotection cd03295
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ...
2-246 4.66e-60

ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213262 [Multi-domain]  Cd Length: 242  Bit Score: 192.90  E-value: 4.66e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHKKKQtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRdik 81
Cdd:cd03295    1 IEFENVTKRYGGGKK---AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELR--- 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 KDIGMIFQHFNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKK--DQFPDELSGGQKQRVAIARALVTNP 159
Cdd:cd03295   75 RKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEfaDRYPHELSGGQQQRVGVARALAADP 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 160 KILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPkttiAQN 239
Cdd:cd03295  155 PLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSP----AND 230

                 ....*..
gi 493203783 240 FVSTVIQ 246
Cdd:cd03295  231 FVAEFVG 237
ABC_ModC_like cd03299
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ...
21-245 5.28e-58

ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213266 [Multi-domain]  Cd Length: 235  Bit Score: 187.54  E-value: 5.28e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  21 LKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNysdkmMRDIKKDIGMIFQHFNLLNSATVF 100
Cdd:cd03299   15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITN-----LPPEKRDISYVPQNYALFPHMTVY 89
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 101 KNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEATSALDPATTASIL 180
Cdd:cd03299   90 KNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLR 169
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 493203783 181 TLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPKTTIAQNFVSTVI 245
Cdd:cd03299  170 EELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKPKNEFVAEFLGFNN 234
PRK15079 PRK15079
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
11-244 9.29e-58

oligopeptide ABC transporter ATP-binding protein OppF; Provisional


Pssm-ID: 185037 [Multi-domain]  Cd Length: 331  Bit Score: 189.92  E-value: 9.29e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  11 FHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRDIKKDIGMIFQH 90
Cdd:PRK15079  27 FWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQD 106
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  91 -FNLLN-SATVFKNVAMPLIL--SKKSKTEIKQRVTEMLEFVGL-SDKKDQFPDELSGGQKQRVAIARALVTNPKILLCD 165
Cdd:PRK15079 107 pLASLNpRMTIGEIIAEPLRTyhPKLSRQEVKDRVKAMMLKVGLlPNLINRYPHEFSGGQCQRIGIARALILEPKLIICD 186
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 493203783 166 EATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPKTTIAQNFVSTV 244
Cdd:PRK15079 187 EPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPYTKALMSAV 265
ABC_CysA_sulfate_importer cd03296
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ...
2-241 1.21e-57

ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213263 [Multi-domain]  Cd Length: 239  Bit Score: 186.39  E-value: 1.21e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHKKKqtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDImnySDKMMRDik 81
Cdd:cd03296    3 IEVRNVSKRFGDFV----ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDA---TDVPVQE-- 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 KDIGMIFQHFNLLNSATVFKNVAMPL----ILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVT 157
Cdd:cd03296   74 RNVGFVFQHYALFRHMTVFDNVAFGLrvkpRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAV 153
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 158 NPKILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPKTTIA 237
Cdd:cd03296  154 EPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPASPFV 233

                 ....
gi 493203783 238 QNFV 241
Cdd:cd03296  234 YSFL 237
ZnuC COG1121
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ...
1-232 1.55e-57

ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];


Pssm-ID: 440738 [Multi-domain]  Cd Length: 245  Bit Score: 186.45  E-value: 1.55e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKKqtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDImnysdkmmRDI 80
Cdd:COG1121    6 AIELENLTVSYGGRP----VLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPP--------RRA 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 KKDIGMIFQHFNLLNS--ATVFKNVAMPLI----LSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARA 154
Cdd:COG1121   74 RRRIGYVPQRAEVDWDfpITVRDVVLMGRYgrrgLFRRPSRADREAVDEALERVGLEDLADRPIGELSGGQQQRVLLARA 153
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 493203783 155 LVTNPKILLCDEATSALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQVVEtGTVKEVFSHP 232
Cdd:COG1121  154 LAQDPDLLLLDEPFAGVDAATEEALYELLRELRRE-GKTILVVTHDLGAVREYFDRVLLLNRGLVAH-GPPEEVLTPE 229
PRK11264 PRK11264
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
1-242 1.04e-56

putative amino-acid ABC transporter ATP-binding protein YecC; Provisional


Pssm-ID: 183063 [Multi-domain]  Cd Length: 250  Bit Score: 184.57  E-value: 1.04e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKkkQTIdaLKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIV-----DGHDIMNYSDK 75
Cdd:PRK11264   3 AIEVKNLVKKFHG--QTV--LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVgditiDTARSLSQQKG 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  76 MMRDIKKDIGMIFQHFNLLNSATVFKNVAM-PLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARA 154
Cdd:PRK11264  79 LIRQLRQHVGFVFQNFNLFPHRTVLENIIEgPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARA 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 155 LVTNPKILLCDEATSALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPKT 234
Cdd:PRK11264 159 LAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQE-KRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADPQQ 237

                 ....*...
gi 493203783 235 TIAQNFVS 242
Cdd:PRK11264 238 PRTRQFLE 245
ThiQ COG3840
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
1-232 6.11e-56

ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];


Pssm-ID: 443051 [Multi-domain]  Cd Length: 232  Bit Score: 181.88  E-value: 6.11e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHkkkqtiDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKmmrdi 80
Cdd:COG3840    1 MLRLDDLTYRYG------DFPLRFDLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLTALPPA----- 69
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 KKDIGMIFQHFNLLNSATVFKNVAmpLILS---KKSKTEiKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVT 157
Cdd:COG3840   70 ERPVSMLFQENNLFPHLTVAQNIG--LGLRpglKLTAEQ-RAQVEQALERVGLAGLLDRLPGQLSGGQRQRVALARCLVR 146
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 493203783 158 NPKILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHP 232
Cdd:COG3840  147 KRPILLLDEPFSALDPALRQEMLDLVDELCRERGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPTAALLDGE 221
PRK10908 PRK10908
cell division ATP-binding protein FtsE;
1-220 6.39e-56

cell division ATP-binding protein FtsE;


Pssm-ID: 182829 [Multi-domain]  Cd Length: 222  Bit Score: 181.61  E-value: 6.39e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKKQtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRDI 80
Cdd:PRK10908   1 MIRFEHVSKAYLGGRQ---ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 KKDIGMIFQHFNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPK 160
Cdd:PRK10908  78 RRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPA 157
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 161 ILLCDEATSALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQVV 220
Cdd:PRK10908 158 VLLADEPTGNLDDALSEGILRLFEEFNRV-GVTVLMATHDIGLISRRSYRMLTLSDGHLH 216
SapF COG4167
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms];
2-241 6.90e-55

ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms];


Pssm-ID: 443328 [Multi-domain]  Cd Length: 265  Bit Score: 180.42  E-value: 6.90e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHK-----KKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDImNYSDKM 76
Cdd:COG4167    5 LEVRNLSKTFKYrtglfRRQQFEAVKPVSFTLEAGQTLAIIGENGSGKSTLAKMLAGIIEPTSGEILINGHKL-EYGDYK 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  77 MRdiKKDIGMIFQHFNL-LN-SATVFKNVAMPLIL-SKKSKTEIKQRVTEMLEFVGLS-DKKDQFPDELSGGQKQRVAIA 152
Cdd:COG4167   84 YR--CKHIRMIFQDPNTsLNpRLNIGQILEEPLRLnTDLTAEEREERIFATLRLVGLLpEHANFYPHMLSSGQKQRVALA 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 153 RALVTNPKILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHP 232
Cdd:COG4167  162 RALILQPKIIIADEALAALDMSVRSQIINLMLELQEKLGISYIYVSQHLGIVKHISDKVLVMHQGEVVEYGKTAEVFANP 241

                 ....*....
gi 493203783 233 KTTIAQNFV 241
Cdd:COG4167  242 QHEVTKRLI 250
FepC COG1120
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ...
1-251 1.71e-54

ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];


Pssm-ID: 440737 [Multi-domain]  Cd Length: 254  Bit Score: 178.70  E-value: 1.71e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKKqtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDkmmRDI 80
Cdd:COG1120    1 MLEAENLSVGYGGRP----VLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASLSR---REL 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 KKDIGMIFQHFNLLNSATVFKNVAM---PLI--LSKKSKTEiKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARAL 155
Cdd:COG1120   74 ARRIAYVPQEPPAPFGLTVRELVALgryPHLglFGRPSAED-REAVEEALERTGLEHLADRPVDELSGGERQRVLIARAL 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 156 VTNPKILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPktT 235
Cdd:COG1120  153 AQEPPLLLLDEPTSHLDLAHQLEVLELLRRLARERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPPEEVLTPE--L 230
                        250
                 ....*....|....*..
gi 493203783 236 IAQNF-VSTVIQTEPST 251
Cdd:COG1120  231 LEEVYgVEARVIEDPVT 247
potG PRK11607
putrescine ABC transporter ATP-binding subunit PotG;
1-244 1.40e-52

putrescine ABC transporter ATP-binding subunit PotG;


Pssm-ID: 183226 [Multi-domain]  Cd Length: 377  Bit Score: 177.72  E-value: 1.40e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFhkkkQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDImnysdKMMRDI 80
Cdd:PRK11607  19 LLEIRNLTKSF----DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDL-----SHVPPY 89
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 KKDIGMIFQHFNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPK 160
Cdd:PRK11607  90 QRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPK 169
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 161 ILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPKTTIAQNF 240
Cdd:PRK11607 170 LLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSAEF 249

                 ....
gi 493203783 241 VSTV 244
Cdd:PRK11607 250 IGSV 253
SunT COG2274
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ...
2-228 1.41e-52

ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];


Pssm-ID: 441875 [Multi-domain]  Cd Length: 711  Bit Score: 184.27  E-value: 1.41e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSksFHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSdkmMRDIK 81
Cdd:COG2274  474 IELENVS--FRYPGDSPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDLRQID---PASLR 548
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 KDIGMIFQHfNLLNSATVFKNVAMplilskkSKTEI-KQRVTEMLEFVGLSDKKDQFPD-----------ELSGGQKQRV 149
Cdd:COG2274  549 RQIGVVLQD-VFLFSGTIRENITL-------GDPDAtDEEIIEAARLAGLHDFIEALPMgydtvvgeggsNLSGGQRQRL 620
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 493203783 150 AIARALVTNPKILLCDEATSALDPATTASILTLLKNVNQtfGITIMMITHEMRVIKDiCNRVAVMEKGQVVETGTVKEV 228
Cdd:COG2274  621 AIARALLRNPRILILDEATSALDAETEAIILENLRRLLK--GRTVIIIAHRLSTIRL-ADRIIVLDKGRIVEDGTHEEL 696
NatA COG4555
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ...
1-228 1.57e-52

ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 443618 [Multi-domain]  Cd Length: 243  Bit Score: 173.51  E-value: 1.57e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKKqtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKmmrdI 80
Cdd:COG4555    1 MIEVENLSKKYGKVP----ALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEPRE----A 72
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 KKDIGMIFQHFNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPK 160
Cdd:COG4555   73 RRQIGVLPDERGLYDRLTVRENIRYFAELYGLFDEELKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARALVHDPK 152
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 493203783 161 ILLCDEATSALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEV 228
Cdd:COG4555  153 VLLLDEPTNGLDVMARRLLREILRALKKE-GKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDEL 219
cbiO PRK13650
energy-coupling factor transporter ATPase;
1-230 2.09e-52

energy-coupling factor transporter ATPase;


Pssm-ID: 184209 [Multi-domain]  Cd Length: 279  Bit Score: 174.53  E-value: 2.09e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKkQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDImnySDKMMRDI 80
Cdd:PRK13650   4 IIEVKNLTFKYKED-QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLL---TEENVWDI 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 KKDIGMIFQH-FNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNP 159
Cdd:PRK13650  80 RHKIGMVFQNpDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRP 159
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 493203783 160 KILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKdICNRVAVMEKGQVVETGTVKEVFS 230
Cdd:PRK13650 160 KIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQVESTSTPRELFS 229
PstB COG1117
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ...
20-242 2.60e-52

ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];


Pssm-ID: 440734 [Multi-domain]  Cd Length: 258  Bit Score: 173.30  E-value: 2.60e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  20 ALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHL-----EAASNGQVIVDGHDImnYSDKM-MRDIKKDIGMIFQHFNL 93
Cdd:COG1117   26 ALKDINLDIPENKVTALIGPSGCGKSTLLRCLNRMndlipGARVEGEILLDGEDI--YDPDVdVVELRRRVGMVFQKPNP 103
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  94 LnSATVFKNVAMPL-ILSKKSKTEIKQRVTEMLEFVGL----SDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEAT 168
Cdd:COG1117  104 F-PKSIYDNVAYGLrLHGIKSKSELDEIVEESLRKAALwdevKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPT 182
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 493203783 169 SALDPATTASILTLLKNVNQTFgiTIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPKTTIAQNFVS 242
Cdd:COG1117  183 SALDPISTAKIEELILELKKDY--TIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTEQIFTNPKDKRTEDYIT 254
cbiO PRK13637
energy-coupling factor transporter ATPase;
20-229 6.95e-52

energy-coupling factor transporter ATPase;


Pssm-ID: 237455 [Multi-domain]  Cd Length: 287  Bit Score: 173.31  E-value: 6.95e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  20 ALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMmRDIKKDIGMIFQH--FNLLNSa 97
Cdd:PRK13637  22 ALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKL-SDIRKKVGLVFQYpeYQLFEE- 99
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  98 TVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLS--DKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEATSALDPAT 175
Cdd:PRK13637 100 TIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDyeDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG 179
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 493203783 176 TASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVF 229
Cdd:PRK13637 180 RDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233
ABC_MalK_N cd03301
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ...
2-223 8.05e-52

The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.


Pssm-ID: 213268 [Multi-domain]  Cd Length: 213  Bit Score: 170.51  E-value: 8.05e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHKKKqtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKmmrdiK 81
Cdd:cd03301    1 VELENVTKRFGNVT----ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK-----D 71
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 KDIGMIFQHFNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKI 161
Cdd:cd03301   72 RDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKV 151
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 493203783 162 LLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETG 223
Cdd:cd03301  152 FLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
ABC_Metallic_Cations cd03235
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ...
20-217 8.13e-52

ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.


Pssm-ID: 213202 [Multi-domain]  Cd Length: 213  Bit Score: 170.79  E-value: 8.13e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  20 ALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDImnysdkmmRDIKKDIGMIFQHFNLLNS--A 97
Cdd:cd03235   14 VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPL--------EKERKRIGYVPQRRSIDRDfpI 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  98 TVFKNVAMPLI----LSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEATSALDP 173
Cdd:cd03235   86 SVRDVVLMGLYghkgLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDP 165
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 493203783 174 ATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKG 217
Cdd:cd03235  166 KTQEDIYELLRELRRE-GMTILVVTHDLGLVLEYFDRVLLLNRT 208
ABC_DR_subfamily_A cd03230
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ...
2-219 8.71e-52

ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213197 [Multi-domain]  Cd Length: 173  Bit Score: 169.12  E-value: 8.71e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHKKKqtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDImnysDKMMRDIK 81
Cdd:cd03230    1 IEVRNLSKRYGKKT----ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDI----KKEPEEVK 72
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 KDIGMIFQHFNLLNSATVFKNVamplilskkskteikqrvtemlefvglsdkkdqfpdELSGGQKQRVAIARALVTNPKI 161
Cdd:cd03230   73 RRIGYLPEEPSLYENLTVRENL------------------------------------KLSGGMKQRLALAQALLHDPEL 116
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 493203783 162 LLCDEATSALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQV 219
Cdd:cd03230  117 LILDEPTSGLDPESRREFWELLRELKKE-GKTILLSSHILEEAERLCDRVAILNNGRI 173
dppF PRK11308
dipeptide transporter ATP-binding subunit; Provisional
6-233 9.87e-52

dipeptide transporter ATP-binding subunit; Provisional


Pssm-ID: 236898 [Multi-domain]  Cd Length: 327  Bit Score: 174.00  E-value: 9.87e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   6 QVSKSFHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRDIKKDIG 85
Cdd:PRK11308  16 PVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQ 95
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  86 MIFQH-FNLLN-SATVFKNVAMPL-ILSKKSKTEIKQRVTEMLEFVGL-SDKKDQFPDELSGGQKQRVAIARALVTNPKI 161
Cdd:PRK11308  96 IVFQNpYGSLNpRKKVGQILEEPLlINTSLSAAERREKALAMMAKVGLrPEHYDRYPHMFSGGQRQRIAIARALMLDPDV 175
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 493203783 162 LLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPK 233
Cdd:PRK11308 176 VVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNNPR 247
potA PRK09452
spermidine/putrescine ABC transporter ATP-binding protein PotA;
2-241 1.57e-51

spermidine/putrescine ABC transporter ATP-binding protein PotA;


Pssm-ID: 236523 [Multi-domain]  Cd Length: 375  Bit Score: 174.75  E-value: 1.57e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHKKKqtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKmmrdiK 81
Cdd:PRK09452  15 VELRGISKSFDGKE----VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE-----N 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 KDIGMIFQHFNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKI 161
Cdd:PRK09452  86 RHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKV 165
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 162 LLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPKTTIAQNFV 241
Cdd:PRK09452 166 LLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKNLFVARFI 245
nikE PRK10419
nickel ABC transporter ATP-binding protein NikE;
10-241 4.81e-51

nickel ABC transporter ATP-binding protein NikE;


Pssm-ID: 236689 [Multi-domain]  Cd Length: 268  Bit Score: 170.64  E-value: 4.81e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  10 SFHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRDIKKDIGMIFQ 89
Cdd:PRK10419  17 GLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQ 96
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  90 H-FNLLNS-ATVFKNVAMPLI-LSKKSKTEIKQRVTEMLEFVGLSDK-KDQFPDELSGGQKQRVAIARALVTNPKILLCD 165
Cdd:PRK10419  97 DsISAVNPrKTVREIIREPLRhLLSLDKAERLARASEMLRAVDLDDSvLDKRPPQLSGGQLQRVCLARALAVEPKLLILD 176
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 493203783 166 EATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEV--FSHPKTTIAQNFV 241
Cdd:PRK10419 177 EAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKltFSSPAGRVLQNAV 254
PRK10619 PRK10619
histidine ABC transporter ATP-binding protein HisP;
11-242 4.95e-51

histidine ABC transporter ATP-binding protein HisP;


Pssm-ID: 182592 [Multi-domain]  Cd Length: 257  Bit Score: 170.15  E-value: 4.95e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  11 FHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSD----------KMMRDI 80
Cdd:PRK10619  11 LHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDkdgqlkvadkNQLRLL 90
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 KKDIGMIFQHFNLLNSATVFKNV-AMPLILSKKSKTEIKQRVTEMLEFVGLSDK-KDQFPDELSGGQKQRVAIARALVTN 158
Cdd:PRK10619  91 RTRLTMVFQHFNLWSHMTVLENVmEAPIQVLGLSKQEARERAVKYLAKVGIDERaQGKYPVHLSGGQQQRVSIARALAME 170
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 159 PKILLCDEATSALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPKTTIAQ 238
Cdd:PRK10619 171 PEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNPQSPRLQ 249

                 ....
gi 493203783 239 NFVS 242
Cdd:PRK10619 250 QFLK 253
ABC_DrrA cd03265
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ...
13-227 8.20e-51

Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213232 [Multi-domain]  Cd Length: 220  Bit Score: 168.32  E-value: 8.20e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  13 KKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMnysdKMMRDIKKDIGMIFQHFN 92
Cdd:cd03265    8 KKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVV----REPREVRRRIGIVFQDLS 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  93 LLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEATSALD 172
Cdd:cd03265   84 VDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLD 163
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 493203783 173 PATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKE 227
Cdd:cd03265  164 PQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEE 218
lolD PRK11629
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
5-219 8.46e-51

lipoprotein-releasing ABC transporter ATP-binding protein LolD;


Pssm-ID: 183244 [Multi-domain]  Cd Length: 233  Bit Score: 168.84  E-value: 8.46e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   5 RQVSKSFHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRDIK-KD 83
Cdd:PRK11629   9 DNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRnQK 88
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  84 IGMIFQHFNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKILL 163
Cdd:PRK11629  89 LGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVL 168
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 493203783 164 CDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDIcNRVAVMEKGQV 219
Cdd:PRK11629 169 ADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQLEMRDGRL 223
PRK10851 PRK10851
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
2-244 1.69e-49

sulfate/thiosulfate ABC transporter ATP-binding protein CysA;


Pssm-ID: 182778 [Multi-domain]  Cd Length: 353  Bit Score: 169.11  E-value: 1.69e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHKKKqtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDImnySDKMMRDik 81
Cdd:PRK10851   3 IEIANIKKSFGRTQ----VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDV---SRLHARD-- 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 KDIGMIFQHFNLLNSATVFKNVAMPLIL----SKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVT 157
Cdd:PRK10851  74 RKVGFVFQHYALFRHMTVFDNIAFGLTVlprrERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAV 153
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 158 NPKILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPKTTIA 237
Cdd:PRK10851 154 EPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATRFV 233

                 ....*..
gi 493203783 238 QNFVSTV 244
Cdd:PRK10851 234 LEFMGEV 240
ABC_subfamily_A cd03263
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ...
2-227 1.97e-49

ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.


Pssm-ID: 213230 [Multi-domain]  Cd Length: 220  Bit Score: 164.60  E-value: 1.97e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHKKKQTidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMnysdKMMRDIK 81
Cdd:cd03263    1 LQIRNLTKTYKKGTKP--AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIR----TDRKAAR 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 KDIGMIFQHFNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKI 161
Cdd:cd03263   75 QSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSV 154
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 493203783 162 LLCDEATSALDPATTASILTLLKNVNQtfGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKE 227
Cdd:cd03263  155 LLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQE 218
ABCC_MRP_Like cd03228
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ...
2-218 2.06e-49

ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213195 [Multi-domain]  Cd Length: 171  Bit Score: 162.94  E-value: 2.06e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHKKKQTIdaLKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRDIk 81
Cdd:cd03228    1 IEFKNVSFSYPGRPKPV--LKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKN- 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 kdIGMIFQHFNLLNsATVFKNVamplilskkskteikqrvtemlefvglsdkkdqfpdeLSGGQKQRVAIARALVTNPKI 161
Cdd:cd03228   78 --IAYVPQDPFLFS-GTIRENI-------------------------------------LSGGQRQRIAIARALLRDPPI 117
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 493203783 162 LLCDEATSALDPATTASILTLLKNVNQtfGITIMMITHEMRVIKDiCNRVAVMEKGQ 218
Cdd:cd03228  118 LILDEATSALDPETEALILEALRALAK--GKTVIVIAHRLSTIRD-ADRIIVLDDGR 171
MdlB COG1132
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
2-224 3.30e-49

ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];


Pssm-ID: 440747 [Multi-domain]  Cd Length: 579  Bit Score: 173.04  E-value: 3.30e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHKKKQtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDImnysdkmmRDIK 81
Cdd:COG1132  340 IEFENVSFSYPGDRP---VLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDI--------RDLT 408
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 KD-----IGMIFQHFNLLnSATVFKNVAmpliLSKKSKTEikQRVTEMLEFVGLSDKKDQFPD-----------ELSGGQ 145
Cdd:COG1132  409 LEslrrqIGVVPQDTFLF-SGTIRENIR----YGRPDATD--EEVEEAAKAAQAHEFIEALPDgydtvvgergvNLSGGQ 481
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 493203783 146 KQRVAIARALVTNPKILLCDEATSALDPATTASILTLLKNVNQtfGITIMMITHEMRVIKDiCNRVAVMEKGQVVETGT 224
Cdd:COG1132  482 RQRIAIARALLKDPPILILDEATSALDTETEALIQEALERLMK--GRTTIVIAHRLSTIRN-ADRILVLDDGRIVEQGT 557
ABC_tran pfam00005
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ...
21-169 4.33e-49

ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.


Pssm-ID: 394964 [Multi-domain]  Cd Length: 150  Bit Score: 161.28  E-value: 4.33e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   21 LKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDImnySDKMMRDIKKDIGMIFQHFNLLNSATVF 100
Cdd:pfam00005   1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDL---TDDERKSLRKEIGYVFQDPQLFPRLTVR 77
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 493203783  101 KNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPD----ELSGGQKQRVAIARALVTNPKILLCDEATS 169
Cdd:pfam00005  78 ENLRLGLLLKGLSKREKDARAEEALEKLGLGDLADRPVGerpgTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
cbiO PRK13635
energy-coupling factor ABC transporter ATP-binding protein;
10-231 4.83e-49

energy-coupling factor ABC transporter ATP-binding protein;


Pssm-ID: 184195 [Multi-domain]  Cd Length: 279  Bit Score: 165.57  E-value: 4.83e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  10 SFHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGhdiMNYSDKMMRDIKKDIGMIFQ 89
Cdd:PRK13635  12 SFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGG---MVLSEETVWDVRRQVGMVFQ 88
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  90 H-FNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEAT 168
Cdd:PRK13635  89 NpDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEAT 168
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 493203783 169 SALDPATTASILTLLKNVNQTFGITIMMITHemrvikDI-----CNRVAVMEKGQVVETGTVKEVFSH 231
Cdd:PRK13635 169 SMLDPRGRREVLETVRQLKEQKGITVLSITH------DLdeaaqADRVIVMNKGEILEEGTPEEIFKS 230
FetA COG4619
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
2-219 2.20e-48

ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];


Pssm-ID: 443661 [Multi-domain]  Cd Length: 209  Bit Score: 161.52  E-value: 2.20e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHKKKQtidaLKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSdkmMRDIK 81
Cdd:COG4619    1 LELEGLSFRVGGKPI----LSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAMP---PPEWR 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 KDIGMIFQHFNLLnSATVFKNVAMPLILSKKSKTEikQRVTEMLEFVGLSDK-KDQFPDELSGGQKQRVAIARALVTNPK 160
Cdd:COG4619   74 RQVAYVPQEPALW-GGTVRDNLPFPFQLRERKFDR--ERALELLERLGLPPDiLDKPVERLSGGERQRLALIRALLLQPD 150
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 493203783 161 ILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQV 219
Cdd:COG4619  151 VLLLDEPTSALDPENTRRVEELLREYLAEEGRAVLWVSHDPEQIERVADRVLTLEAGRL 209
fbpC PRK11432
ferric ABC transporter ATP-binding protein;
2-240 2.39e-48

ferric ABC transporter ATP-binding protein;


Pssm-ID: 183133 [Multi-domain]  Cd Length: 351  Bit Score: 166.05  E-value: 2.39e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFhKKKQTIDalkDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKmmrdiK 81
Cdd:PRK11432   7 VVLKNITKRF-GSNTVID---NLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ-----Q 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 KDIGMIFQHFNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKI 161
Cdd:PRK11432  78 RDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKV 157
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 493203783 162 LLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPKTTIAQNF 240
Cdd:PRK11432 158 LLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRFMASF 236
PRK10070 PRK10070
proline/glycine betaine ABC transporter ATP-binding protein ProV;
20-244 1.73e-47

proline/glycine betaine ABC transporter ATP-binding protein ProV;


Pssm-ID: 182221 [Multi-domain]  Cd Length: 400  Bit Score: 165.21  E-value: 1.73e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  20 ALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRDIK-KDIGMIFQHFNLLNSAT 98
Cdd:PRK10070  43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRrKKIAMVFQSFALMPHMT 122
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  99 VFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEATSALDPATTAS 178
Cdd:PRK10070 123 VLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTE 202
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 493203783 179 ILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPKTTIAQNFVSTV 244
Cdd:PRK10070 203 MQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFFRGV 268
ABC_drug_resistance_like cd03264
ABC-type multidrug transport system, ATPase component; The biological function of this family ...
2-223 4.87e-47

ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213231 [Multi-domain]  Cd Length: 211  Bit Score: 158.13  E-value: 4.87e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHKKKqtidALKDVSFTVNhNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMnysdKMMRDIK 81
Cdd:cd03264    1 LQLENLTKRYGKKR----ALDGVSLTLG-PGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVL----KQPQKLR 71
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 KDIGMIFQHFNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKI 161
Cdd:cd03264   72 RRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSI 151
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 493203783 162 LLCDEATSALDPATTASILTLLKNVNQTfgITIMMITHEMRVIKDICNRVAVMEKGQVVETG 223
Cdd:cd03264  152 LIVDEPTAGLDPEERIRFRNLLSELGED--RIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
PRK14247 PRK14247
phosphate ABC transporter ATP-binding protein; Provisional
2-242 5.15e-47

phosphate ABC transporter ATP-binding protein; Provisional


Pssm-ID: 172735 [Multi-domain]  Cd Length: 250  Bit Score: 159.69  E-value: 5.15e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFhkkkQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHL-----EAASNGQVIVDGHDIMnysdKM 76
Cdd:PRK14247   4 IEIRDLKVSF----GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLielypEARVSGEVYLDGQDIF----KM 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  77 -MRDIKKDIGMIFQHFNLLNSATVFKNVAMPLILSK--KSKTEIKQRVTEMLEFVGLSDK-KDQF---PDELSGGQKQRV 149
Cdd:PRK14247  76 dVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRlvKSKKELQERVRWALEKAQLWDEvKDRLdapAGKLSGGQQQRL 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 150 AIARALVTNPKILLCDEATSALDPATTASILTLLKNVNQTfgITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVF 229
Cdd:PRK14247 156 CIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKD--MTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF 233
                        250
                 ....*....|...
gi 493203783 230 SHPKTTIAQNFVS 242
Cdd:PRK14247 234 TNPRHELTEKYVT 246
cbiO PRK13639
cobalt transporter ATP-binding subunit; Provisional
1-267 5.84e-47

cobalt transporter ATP-binding subunit; Provisional


Pssm-ID: 184199 [Multi-domain]  Cd Length: 275  Bit Score: 160.24  E-value: 5.84e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKKQtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDImNYSDKMMRDI 80
Cdd:PRK13639   1 ILETRDLKYSYPDGTE---ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPI-KYDKKSLLEV 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 KKDIGMIFQHF-NLLNSATVFKNVAM-PLILsKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTN 158
Cdd:PRK13639  77 RKTVGIVFQNPdDQLFAPTVEEDVAFgPLNL-GLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMK 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 159 PKILLCDEATSALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPKTTIAQ 238
Cdd:PRK13639 156 PEIIVLDEPTSGLDPMGASQIMKLLYDLNKE-GITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDIETIRKA 234
                        250       260
                 ....*....|....*....|....*....
gi 493203783 239 NFVSTVIqtepsTSLIRRLNDEQVGDFKD 267
Cdd:PRK13639 235 NLRLPRV-----AHLIEILNKEDNLPIKM 258
PRK13633 PRK13633
energy-coupling factor transporter ATPase;
1-230 8.47e-47

energy-coupling factor transporter ATPase;


Pssm-ID: 237453 [Multi-domain]  Cd Length: 280  Bit Score: 159.87  E-value: 8.47e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKKQTID--ALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDkmMR 78
Cdd:PRK13633   4 MIKCKNVSYKYESNEESTEklALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEEN--LW 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  79 DIKKDIGMIFQH-FNLLNSATVFKNVAM-PLILSKKSKtEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALV 156
Cdd:PRK13633  82 DIRNKAGMVFQNpDNQIVATIVEEDVAFgPENLGIPPE-EIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILA 160
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 493203783 157 TNPKILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDiCNRVAVMEKGQVVETGTVKEVFS 230
Cdd:PRK13633 161 MRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEIFK 233
ABC_Iron-Siderophores_B12_Hemin cd03214
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ...
3-223 1.54e-46

ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.


Pssm-ID: 213181 [Multi-domain]  Cd Length: 180  Bit Score: 156.06  E-value: 1.54e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   3 EFRQVSKSFHKKKqtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSdkmMRDIKK 82
Cdd:cd03214    1 EVENLSVGYGGRT----VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLS---PKELAR 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  83 DIGMIFQhfnllnsatvfknvamplilskkskteikqrvteMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKIL 162
Cdd:cd03214   74 KIAYVPQ----------------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPIL 119
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 493203783 163 LCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETG 223
Cdd:cd03214  120 LLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
ABC_ATPase cd00267
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ...
3-218 4.95e-46

ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213179 [Multi-domain]  Cd Length: 157  Bit Score: 153.94  E-value: 4.95e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   3 EFRQVSKSFHKKKqtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDImnySDKMMRDIKK 82
Cdd:cd00267    1 EIENLSFRYGGRT----ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDI---AKLPLEELRR 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  83 DIGMIFQhfnllnsatvfknvamplilskkskteikqrvtemlefvglsdkkdqfpdeLSGGQKQRVAIARALVTNPKIL 162
Cdd:cd00267   74 RIGYVPQ---------------------------------------------------LSGGQRQRVALARALLLNPDLL 102
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 493203783 163 LCDEATSALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQ 218
Cdd:cd00267  103 LLDEPTSGLDPASRERLLELLRELAEE-GRTVIIVTHDPELAELAADRVIVLKDGK 157
ABC_ModC_molybdenum_transporter cd03297
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ...
23-223 1.55e-45

ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213264 [Multi-domain]  Cd Length: 214  Bit Score: 154.38  E-value: 1.55e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  23 DVSFTVNHNDIfGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKM-MRDIKKDIGMIFQHFNLLNSATVFK 101
Cdd:cd03297   16 KIDFDLNEEVT-GIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKInLPPQQRKIGLVFQQYALFPHLNVRE 94
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 102 NVAmpLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEATSALDPATTASILT 181
Cdd:cd03297   95 NLA--FGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLP 172
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 493203783 182 LLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETG 223
Cdd:cd03297  173 ELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
PRK15134 PRK15134
microcin C ABC transporter ATP-binding protein YejF; Provisional
1-233 5.35e-45

microcin C ABC transporter ATP-binding protein YejF; Provisional


Pssm-ID: 237917 [Multi-domain]  Cd Length: 529  Bit Score: 161.03  E-value: 5.35e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKK----KQTID---ALKDVSFTVNHNDIFGVIGYSGAGKST----LVRLVNhleaaSNGQVIVDGHDI 69
Cdd:PRK15134 275 LLDVEQLQVAFPIRkgilKRTVDhnvVVKNISFTLRPGETLGLVGESGSGKSTtglaLLRLIN-----SQGEIWFDGQPL 349
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  70 MNYSDKMMRDIKKDIGMIFQHFN-LLN-SATVFKNVAMPLILSKK--SKTEIKQRVTEMLEFVGLS-DKKDQFPDELSGG 144
Cdd:PRK15134 350 HNLNRRQLLPVRHRIQVVFQDPNsSLNpRLNVLQIIEEGLRVHQPtlSAAQREQQVIAVMEEVGLDpETRHRYPAEFSGG 429
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 145 QKQRVAIARALVTNPKILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGT 224
Cdd:PRK15134 430 QRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGD 509

                 ....*....
gi 493203783 225 VKEVFSHPK 233
Cdd:PRK15134 510 CERVFAAPQ 518
cbiO PRK13648
cobalt transporter ATP-binding subunit; Provisional
1-231 7.17e-45

cobalt transporter ATP-binding subunit; Provisional


Pssm-ID: 184207 [Multi-domain]  Cd Length: 269  Bit Score: 154.52  E-value: 7.17e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSksFHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDImnySDKMMRDI 80
Cdd:PRK13648   7 IIVFKNVS--FQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAI---TDDNFEKL 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 KKDIGMIFQH-FNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNP 159
Cdd:PRK13648  82 RKHIGIVFQNpDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNP 161
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 493203783 160 KILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDiCNRVAVMEKGQVVETGTVKEVFSH 231
Cdd:PRK13648 162 SVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEIFDH 232
ABC_TM1139_LivF_branched cd03224
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ...
18-228 3.14e-44

ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.


Pssm-ID: 213191 [Multi-domain]  Cd Length: 222  Bit Score: 151.43  E-value: 3.14e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  18 IDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNY-SDKMMRdikKDIGMIFQHFNLLNS 96
Cdd:cd03224   13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLpPHERAR---AGIGYVPEGRRIFPE 89
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  97 ATVFKNVAMPLILSKKSKteIKQRVTEMLE-FVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEATSALDPAT 175
Cdd:cd03224   90 LTVEENLLLGAYARRRAK--RKARLERVYElFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKI 167
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 493203783 176 TASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEV 228
Cdd:cd03224  168 VEEIFEAIRELRDE-GVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAEL 219
TauB COG4525
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
1-199 3.22e-44

ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];


Pssm-ID: 443596 [Multi-domain]  Cd Length: 262  Bit Score: 152.71  E-value: 3.22e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSdkmmrdi 80
Cdd:COG4525    3 MLTVRHVSVRYPGGGQPQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPVTGPG------- 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 kKDIGMIFQHFNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPK 160
Cdd:COG4525   76 -ADRGVVFQKDALLPWLNVLDNVAFGLRLRGVPKAERRARAEELLALVGLADFARRRIWQLSGGMRQRVGIARALAADPR 154
                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 493203783 161 ILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITH 199
Cdd:COG4525  155 FLLMDEPFGALDALTREQMQELLLDVWQRTGKGVFLITH 193
cbiO PRK13652
cobalt transporter ATP-binding subunit; Provisional
1-232 9.33e-44

cobalt transporter ATP-binding subunit; Provisional


Pssm-ID: 172200 [Multi-domain]  Cd Length: 277  Bit Score: 151.88  E-value: 9.33e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSksfHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDImnySDKMMRDI 80
Cdd:PRK13652   3 LIETRDLC---YSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPI---TKENIREV 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 KKDIGMIFQHFN-LLNSATVFKNVAM-PLILSKKSKTeIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTN 158
Cdd:PRK13652  77 RKFVGLVFQNPDdQIFSPTVEQDIAFgPINLGLDEET-VAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAME 155
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 493203783 159 PKILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHP 232
Cdd:PRK13652 156 PQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQP 229
ABC_ThiQ_thiamine_transporter cd03298
ATP-binding cassette domain of the thiamine transport system; Part of the ...
23-223 1.04e-43

ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213265 [Multi-domain]  Cd Length: 211  Bit Score: 149.57  E-value: 1.04e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  23 DVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDiMNYSDKMMRDIKkdigMIFQHFNLLNSATVFKN 102
Cdd:cd03298   16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVD-VTAAPPADRPVS----MLFQENNLFAHLTVEQN 90
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 103 VAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEATSALDPATTASILTL 182
Cdd:cd03298   91 VGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDL 170
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 493203783 183 LKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETG 223
Cdd:cd03298  171 VLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
ABCC_bacteriocin_exporters cd03245
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ...
2-223 1.58e-43

ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.


Pssm-ID: 213212 [Multi-domain]  Cd Length: 220  Bit Score: 149.28  E-value: 1.58e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSksFHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSdkmMRDIK 81
Cdd:cd03245    3 IEFRNVS--FSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLD---PADLR 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 KDIGMIFQHFNLLnSATVFKNVAMPLILSKKskteikQRVTEMLEFVGLSDKKDQFPD-----------ELSGGQKQRVA 150
Cdd:cd03245   78 RNIGYVPQDVTLF-YGTLRDNITLGAPLADD------ERILRAAELAGVTDFVNKHPNgldlqigergrGLSGGQRQAVA 150
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 493203783 151 IARALVTNPKILLCDEATSALDPATTASILTLLKNVnqTFGITIMMITHEMRVIkDICNRVAVMEKGQVVETG 223
Cdd:cd03245  151 LARALLNDPPILLLDEPTSAMDMNSEERLKERLRQL--LGDKTLIIITHRPSLL-DLVDRIIVMDSGRIVADG 220
ModC COG4148
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ...
23-232 1.41e-42

ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443319 [Multi-domain]  Cd Length: 358  Bit Score: 151.02  E-value: 1.41e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  23 DVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDImnYSDKMMRDI---KKDIGMIFQHFNLLNSATV 99
Cdd:COG4148   17 DVDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGEVL--QDSARGIFLpphRRRIGYVFQEARLFPHLSV 94
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 100 FKNV--AMPLILSKKSKTEIkQRVTEMLefvGLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEATSALDPATTA 177
Cdd:COG4148   95 RGNLlyGRKRAPRAERRISF-DEVVELL---GIGHLLDRRPATLSGGERQRVAIGRALLSSPRLLLMDEPLAALDLARKA 170
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 493203783 178 SILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHP 232
Cdd:COG4148  171 EILPYLERLRDELDIPILYVSHSLDEVARLADHVVLLEQGRVVASGPLAEVLSRP 225
PRK10261 PRK10261
glutathione transporter ATP-binding protein; Provisional
11-260 1.51e-42

glutathione transporter ATP-binding protein; Provisional


Pssm-ID: 182342 [Multi-domain]  Cd Length: 623  Bit Score: 155.78  E-value: 1.51e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  11 FHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRDIKKDIGMIFQ- 89
Cdd:PRK10261 330 LNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQd 409
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  90 -HFNLLNSATVFKNVAMPLILSKKSKTEIKQ-RVTEMLEFVGLSDKKD-QFPDELSGGQKQRVAIARALVTNPKILLCDE 166
Cdd:PRK10261 410 pYASLDPRQTVGDSIMEPLRVHGLLPGKAAAaRVAWLLERVGLLPEHAwRYPHEFSGGQRQRICIARALALNPKVIIADE 489
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 167 ATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPKTTIAQNFVSTVIQ 246
Cdd:PRK10261 490 AVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTRKLMAAVPV 569
                        250
                 ....*....|....*.
gi 493203783 247 TEPSTSLIRR--LNDE 260
Cdd:PRK10261 570 ADPSRQRPQRvlLSDD 585
cbiO PRK13636
cobalt transporter ATP-binding subunit; Provisional
20-230 1.66e-42

cobalt transporter ATP-binding subunit; Provisional


Pssm-ID: 184196 [Multi-domain]  Cd Length: 283  Bit Score: 148.84  E-value: 1.66e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  20 ALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDImNYSDKMMRDIKKDIGMIFQH-FNLLNSAT 98
Cdd:PRK13636  21 ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPI-DYSRKGLMKLRESVGMVFQDpDNQLFSAS 99
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  99 VFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEATSALDPATTAS 178
Cdd:PRK13636 100 VYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSE 179
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 493203783 179 ILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFS 230
Cdd:PRK13636 180 IMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231
ABCC_Hemolysin cd03252
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ...
2-230 2.61e-42

ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.


Pssm-ID: 213219 [Multi-domain]  Cd Length: 237  Bit Score: 146.86  E-value: 2.61e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSksFHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRdik 81
Cdd:cd03252    1 ITFEHVR--FRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLR--- 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 KDIGMIFQHfNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFV-GLSDKKDQFPDE----LSGGQKQRVAIARALV 156
Cdd:cd03252   76 RQVGVVLQE-NVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFIsELPEGYDTIVGEqgagLSGGQRQRIAIARALI 154
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 493203783 157 TNPKILLCDEATSALDPATTASILTLLKNVNQtfGITIMMITHEMRVIKDiCNRVAVMEKGQVVETGTVKEVFS 230
Cdd:cd03252  155 HNPRILIFDEATSALDYESEHAIMRNMHDICA--GRTVIIIAHRLSTVKN-ADRIIVMEKGRIVEQGSHDELLA 225
oppD PRK09473
oligopeptide transporter ATP-binding component; Provisional
20-232 2.64e-42

oligopeptide transporter ATP-binding component; Provisional


Pssm-ID: 181888 [Multi-domain]  Cd Length: 330  Bit Score: 149.49  E-value: 2.64e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  20 ALKDVSFTVNHNDIFGVIGYSGAGKS-TLVRLVNHLeaASNGQV----IVDGHDIMNYSDKMMRDIK-KDIGMIFQH-FN 92
Cdd:PRK09473  31 AVNDLNFSLRAGETLGIVGESGSGKSqTAFALMGLL--AANGRIggsaTFNGREILNLPEKELNKLRaEQISMIFQDpMT 108
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  93 LLNS-ATVFKNVAMPLILSKK-SKTEIKQRVTEMLEFVGLSDKKDQ---FPDELSGGQKQRVAIARALVTNPKILLCDEA 167
Cdd:PRK09473 109 SLNPyMRVGEQLMEVLMLHKGmSKAEAFEESVRMLDAVKMPEARKRmkmYPHEFSGGMRQRVMIAMALLCRPKLLIADEP 188
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 493203783 168 TSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHP 232
Cdd:PRK09473 189 TTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFYQP 253
cbiO PRK13632
cobalt transporter ATP-binding subunit; Provisional
1-229 3.19e-42

cobalt transporter ATP-binding subunit; Provisional


Pssm-ID: 237452 [Multi-domain]  Cd Length: 271  Bit Score: 147.44  E-value: 3.19e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKKQTidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDImnySDKMMRDI 80
Cdd:PRK13632   7 MIKVENVSFSYPNSENN--ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITI---SKENLKEI 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 KKDIGMIFQH-FNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNP 159
Cdd:PRK13632  82 RKKIGIIFQNpDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNP 161
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 493203783 160 KILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEM-RVIKdiCNRVAVMEKGQVVETGTVKEVF 229
Cdd:PRK13632 162 EIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMdEAIL--ADKVIVFSEGKLIAQGKPKEIL 230
cbiO PRK13634
cobalt transporter ATP-binding subunit; Provisional
2-232 3.37e-42

cobalt transporter ATP-binding subunit; Provisional


Pssm-ID: 237454 [Multi-domain]  Cd Length: 290  Bit Score: 148.24  E-value: 3.37e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHKKKQ-TIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSD-KMMRD 79
Cdd:PRK13634   3 ITFQKVEHRYQYKTPfERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKnKKLKP 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  80 IKKDIGMIFQhF--NLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDK-KDQFPDELSGGQKQRVAIARALV 156
Cdd:PRK13634  83 LRKKVGIVFQ-FpeHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEElLARSPFELSGGQMRRVAIAGVLA 161
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 493203783 157 TNPKILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHP 232
Cdd:PRK13634 162 MEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADP 237
ntrCD TIGR01184
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ...
21-233 5.62e-42

nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]


Pssm-ID: 130252 [Multi-domain]  Cd Length: 230  Bit Score: 145.69  E-value: 5.62e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   21 LKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYS-DKMMrdikkdigmIFQHFNLLNSATV 99
Cdd:TIGR01184   1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGpDRMV---------VFQNYSLLPWLTV 71
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  100 FKNVAMPL--ILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEATSALDPATTA 177
Cdd:TIGR01184  72 RENIALAVdrVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRG 151
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 493203783  178 SILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEV-FSHPK 233
Cdd:TIGR01184 152 NLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVpFPRPR 208
cbiO PRK13649
energy-coupling factor transporter ATPase;
20-231 2.33e-41

energy-coupling factor transporter ATPase;


Pssm-ID: 184208 [Multi-domain]  Cd Length: 280  Bit Score: 145.66  E-value: 2.33e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  20 ALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYS-DKMMRDIKKDIGMIFQhF--NLLNS 96
Cdd:PRK13649  22 ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSkNKDIKQIRKKVGLVFQ-FpeSQLFE 100
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  97 ATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDK-KDQFPDELSGGQKQRVAIARALVTNPKILLCDEATSALDPAT 175
Cdd:PRK13649 101 ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESlFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKG 180
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 493203783 176 TASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSH 231
Cdd:PRK13649 181 RKELMTLFKKLHQS-GMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235
PRK14239 PRK14239
phosphate transporter ATP-binding protein; Provisional
1-242 3.42e-41

phosphate transporter ATP-binding protein; Provisional


Pssm-ID: 184585 [Multi-domain]  Cd Length: 252  Bit Score: 144.53  E-value: 3.42e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKKqtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHL-----EAASNGQVIVDGHDImnYSDK 75
Cdd:PRK14239   5 ILQVSDLSVYYNKKK----ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMndlnpEVTITGSIVYNGHNI--YSPR 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  76 M-MRDIKKDIGMIFQHFNLLnSATVFKNVAMPL-ILSKKSKTEIKQRVTEMLEFVGLSDK-KDQFPDE---LSGGQKQRV 149
Cdd:PRK14239  79 TdTVDLRKEIGMVFQQPNPF-PMSIYENVVYGLrLKGIKDKQVLDEAVEKSLKGASIWDEvKDRLHDSalgLSGGQQQRV 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 150 AIARALVTNPKILLCDEATSALDPATTASILTLLKNVNQTFgiTIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVF 229
Cdd:PRK14239 158 CIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDY--TMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMF 235
                        250
                 ....*....|...
gi 493203783 230 SHPKTTIAQNFVS 242
Cdd:PRK14239 236 MNPKHKETEDYIS 248
PRK15112 PRK15112
peptide ABC transporter ATP-binding protein SapF;
1-240 3.77e-41

peptide ABC transporter ATP-binding protein SapF;


Pssm-ID: 185067 [Multi-domain]  Cd Length: 267  Bit Score: 144.55  E-value: 3.77e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKK-----KQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDiMNYSDK 75
Cdd:PRK15112   4 LLEVRNLSKTFRYRtgwfrRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHP-LHFGDY 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  76 MMRdiKKDIGMIFQH-FNLLN-SATVFKNVAMPLILSKK-SKTEIKQRVTEMLEFVGL-SDKKDQFPDELSGGQKQRVAI 151
Cdd:PRK15112  83 SYR--SQRIRMIFQDpSTSLNpRQRISQILDFPLRLNTDlEPEQREKQIIETLRQVGLlPDHASYYPHMLAPGQKQRLGL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 152 ARALVTNPKILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSH 231
Cdd:PRK15112 161 ARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLAS 240
                        250
                 ....*....|....
gi 493203783 232 P-----KTTIAQNF 240
Cdd:PRK15112 241 PlheltKRLIAGHF 254
PRK10261 PRK10261
glutathione transporter ATP-binding protein; Provisional
1-246 4.35e-41

glutathione transporter ATP-binding protein; Provisional


Pssm-ID: 182342 [Multi-domain]  Cd Length: 623  Bit Score: 151.55  E-value: 4.35e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKS-TLVRLVNHLEAAS-------------NGQVIvdg 66
Cdd:PRK10261  12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSvTALALMRLLEQAGglvqcdkmllrrrSRQVI--- 88
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  67 hDIMNYSDKMMRDIK-KDIGMIFQH-FNLLNSA-TVFKNVAMPLILSKK-SKTEIKQRVTEMLEFVGLSDKK---DQFPD 139
Cdd:PRK10261  89 -ELSEQSAAQMRHVRgADMAMIFQEpMTSLNPVfTVGEQIAESIRLHQGaSREEAMVEAKRMLDQVRIPEAQtilSRYPH 167
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 140 ELSGGQKQRVAIARALVTNPKILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQV 219
Cdd:PRK10261 168 QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEA 247
                        250       260
                 ....*....|....*....|....*..
gi 493203783 220 VETGTVKEVFSHPKTTIAQNFVSTVIQ 246
Cdd:PRK10261 248 VETGSVEQIFHAPQHPYTRALLAAVPQ 274
ABCC_ATM1_transporter cd03253
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ...
2-227 1.59e-40

ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213220 [Multi-domain]  Cd Length: 236  Bit Score: 141.98  E-value: 1.59e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHKKKQTidaLKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRdik 81
Cdd:cd03253    1 IEFENVTFAYDPGRPV---LKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLR--- 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 KDIGMIFQHFNLLNsATVFKNVAMplilSKKSKTEikQRVTEMLEFVGLSDKKDQFPD-----------ELSGGQKQRVA 150
Cdd:cd03253   75 RAIGVVPQDTVLFN-DTIGYNIRY----GRPDATD--EEVIEAAKAAQIHDKIMRFPDgydtivgerglKLSGGEKQRVA 147
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 493203783 151 IARALVTNPKILLCDEATSALDPATTASILTLLKNVNQtfGITIMMITHEMRVIKDiCNRVAVMEKGQVVETGTVKE 227
Cdd:cd03253  148 IARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK--GRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERGTHEE 221
PRK14267 PRK14267
phosphate ABC transporter ATP-binding protein; Provisional
21-245 1.79e-40

phosphate ABC transporter ATP-binding protein; Provisional


Pssm-ID: 184596 [Multi-domain]  Cd Length: 253  Bit Score: 142.67  E-value: 1.79e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  21 LKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHL-----EAASNGQVIVDGHDImnYSDKMMR-DIKKDIGMIFQHFNLL 94
Cdd:PRK14267  20 IKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLlelneEARVEGEVRLFGRNI--YSPDVDPiEVRREVGMVFQYPNPF 97
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  95 NSATVFKNVAMPLILSK--KSKTEIKQRVTEMLEFVGLSDK-KDQ---FPDELSGGQKQRVAIARALVTNPKILLCDEAT 168
Cdd:PRK14267  98 PHLTIYDNVAIGVKLNGlvKSKKELDERVEWALKKAALWDEvKDRlndYPSNLSGGQRQRLVIARALAMKPKILLMDEPT 177
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 493203783 169 SALDPATTASILTLLKNVNQTFgiTIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPKTTIAQNFVSTVI 245
Cdd:PRK14267 178 ANIDPVGTAKIEELLFELKKEY--TIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENPEHELTEKYVTGAL 252
ABC_NatA_sodium_exporter cd03266
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ...
1-223 9.12e-40

ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.


Pssm-ID: 213233 [Multi-domain]  Cd Length: 218  Bit Score: 139.43  E-value: 9.12e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMnysdKMMRDI 80
Cdd:cd03266    1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVV----KEPAEA 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 KKDIGMIFQHFNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPK 160
Cdd:cd03266   77 RRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPP 156
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 493203783 161 ILLCDEATSALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQVVETG 223
Cdd:cd03266  157 VLLLDEPTTGLDVMATRALREFIRQLRAL-GKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
CydD COG4988
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ...
2-231 1.43e-39

ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444012 [Multi-domain]  Cd Length: 563  Bit Score: 146.83  E-value: 1.43e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHKKKQtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSdkmMRDIK 81
Cdd:COG4988  337 IELEDVSFSYPGGRP---ALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSDLD---PASWR 410
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 KDIGMIFQHFNLLNsATVFKNVAmpliLSKKSKTEikQRVTEMLEFVGLSDKKDQFPD-------E----LSGGQKQRVA 150
Cdd:COG4988  411 RQIAWVPQNPYLFA-GTIRENLR----LGRPDASD--EELEAALEAAGLDEFVAALPDgldtplgEggrgLSGGQAQRLA 483
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 151 IARALVTNPKILLCDEATSALDPATTASILTLLKNVNQtfGITIMMITHEMRVIKDiCNRVAVMEKGQVVETGTVKEVFS 230
Cdd:COG4988  484 LARALLRDAPLLLLDEPTAHLDAETEAEILQALRRLAK--GRTVILITHRLALLAQ-ADRILVLDDGRIVEQGTHEELLA 560

                 .
gi 493203783 231 H 231
Cdd:COG4988  561 K 561
YhaQ COG4152
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ...
1-287 1.78e-39

ABC-type uncharacterized transport system, ATPase component [General function prediction only];


Pssm-ID: 443322 [Multi-domain]  Cd Length: 298  Bit Score: 141.01  E-value: 1.78e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKKqtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDImnySDKMMRDI 80
Cdd:COG4152    1 MLELKGLTKRFGDKT----AVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPL---DPEDRRRI 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 -----------KKDIGMIFQHFNLLnsatvfKNVamplilskkSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRV 149
Cdd:COG4152   74 gylpeerglypKMKVGEQLVYLARL------KGL---------SKAEAKRRADEWLERLGLGDRANKKVEELSKGNQQKV 138
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 150 AIARALVTNPKILLCDEATSALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVf 229
Cdd:COG4152  139 QLIAALLHDPELLILDEPFSGLDPVNVELLKDVIRELAAK-GTTVIFSSHQMELVEELCDRIVIINKGRKVLSGSVDEI- 216
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 230 shpKTTIAQNFVstVIQTEPSTSLIRRLNDEQVGDFKD--YKIFVEETQVTQPIINDLIQ 287
Cdd:COG4152  217 ---RRQFGRNTL--RLEADGDAGWLRALPGVTVVEEDGdgAELKLEDGADAQELLRALLA 271
CydC COG4987
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ...
2-227 2.03e-39

ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444011 [Multi-domain]  Cd Length: 569  Bit Score: 146.45  E-value: 2.03e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSksFHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRDIk 81
Cdd:COG4987  334 LELEDVS--FRYPGAGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRDLDEDDLRRR- 410
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 kdIGMIFQHFNLLNsATVFKNvampLILSKKSKTEikQRVTEMLEFVGLSDKKDQFPD-------E----LSGGQKQRVA 150
Cdd:COG4987  411 --IAVVPQRPHLFD-TTLREN----LRLARPDATD--EELWAALERVGLGDWLAALPDgldtwlgEggrrLSGGERRRLA 481
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 493203783 151 IARALVTNPKILLCDEATSALDPATTASILTLLKNVNQtfGITIMMITHEMRVIkDICNRVAVMEKGQVVETGTVKE 227
Cdd:COG4987  482 LARALLRDAPILLLDEPTEGLDAATEQALLADLLEALA--GRTVLLITHRLAGL-ERMDRILVLEDGRIVEQGTHEE 555
NupO COG3845
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ...
1-228 3.19e-39

ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];


Pssm-ID: 443055 [Multi-domain]  Cd Length: 504  Bit Score: 144.78  E-value: 3.19e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKKqtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGH--DIMNYSDKmmr 78
Cdd:COG3845    5 ALELRGITKRFGGVV----ANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGKpvRIRSPRDA--- 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  79 dIKKDIGMIFQHFNLLNSATVFKNVAM---PLILSKKSKTEIKQRVTEMLEFVGLS-DkkdqfPD----ELSGGQKQRVA 150
Cdd:COG3845   78 -IALGIGMVHQHFMLVPNLTVAENIVLglePTKGGRLDRKAARARIRELSERYGLDvD-----PDakveDLSVGEQQRVE 151
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 493203783 151 IARALVTNPKILLCDEATSALDPATTASILTLLKN-VNQtfGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEV 228
Cdd:COG3845  152 ILKALYRGARILILDEPTAVLTPQEADELFEILRRlAAE--GKSIIFITHKLREVMAIADRVTVLRRGKVVGTVDTAET 228
MglA COG1129
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
1-228 4.71e-39

ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];


Pssm-ID: 440745 [Multi-domain]  Cd Length: 497  Bit Score: 144.39  E-value: 4.71e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKKqtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDG--HDIMNYSDkmmr 78
Cdd:COG1129    4 LLEMRGISKSFGGVK----ALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGepVRFRSPRD---- 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  79 DIKKDIGMIFQHFNLLNSATVFKNVAMPLILSKK---SKTEIKQRVTEMLEFVGLS-DkkdqfPD----ELSGGQKQRVA 150
Cdd:COG1129   76 AQAAGIAIIHQELNLVPNLSVAENIFLGREPRRGgliDWRAMRRRARELLARLGLDiD-----PDtpvgDLSVAQQQLVE 150
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 493203783 151 IARALVTNPKILLCDEATSALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEV 228
Cdd:COG1129  151 IARALSRDARVLILDEPTASLTEREVERLFRIIRRLKAQ-GVAIIYISHRLDEVFEIADRVTVLRDGRLVGTGPVAEL 227
ABC_MTABC3_MDL1_MDL2 cd03249
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ...
2-227 7.15e-39

ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.


Pssm-ID: 213216 [Multi-domain]  Cd Length: 238  Bit Score: 137.67  E-value: 7.15e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHKKKQTIdALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSdkmMRDIK 81
Cdd:cd03249    1 IEFKNVSFRYPSRPDVP-ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLN---LRWLR 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 KDIGMIFQHFNLLNsATVFKNVAmpliLSKKSKT--EIKQ--RVTEMLEFV-GLSDKKD----QFPDELSGGQKQRVAIA 152
Cdd:cd03249   77 SQIGLVSQEPVLFD-GTIAENIR----YGKPDATdeEVEEaaKKANIHDFImSLPDGYDtlvgERGSQLSGGQKQRIAIA 151
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 493203783 153 RALVTNPKILLCDEATSALDPATTASILTLLKNVNQtfGITIMMITHEMRVIKDiCNRVAVMEKGQVVETGTVKE 227
Cdd:cd03249  152 RALLRNPKILLLDEATSALDAESEKLVQEALDRAMK--GRTTIVIAHRLSTIRN-ADLIAVLQNGQVVEQGTHDE 223
ABC_BcrA_bacitracin_resist cd03268
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ...
2-223 7.92e-39

ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.


Pssm-ID: 213235 [Multi-domain]  Cd Length: 208  Bit Score: 136.96  E-value: 7.92e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHKKKqtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRdik 81
Cdd:cd03268    1 LKTNDLTKTYGKKR----VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRR--- 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 kdIGMIFQHFNLLNSATVFKNvampLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKI 161
Cdd:cd03268   74 --IGALIEAPGFYPNLTAREN----LRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDL 147
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 493203783 162 LLCDEATSALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQVVETG 223
Cdd:cd03268  148 LILDEPTNGLDPDGIKELRELILSLRDQ-GITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
LivF COG0410
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ...
18-233 9.76e-39

ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];


Pssm-ID: 440179 [Multi-domain]  Cd Length: 236  Bit Score: 137.42  E-value: 9.76e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  18 IDALKDVSFTVNHNDIFGVIGYSGAGKSTLVR-LVNHLEAASnGQVIVDGHDIMNYS-DKMMRdikKDIGM------IFQ 89
Cdd:COG0410   16 IHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKaISGLLPPRS-GSIRFDGEDITGLPpHRIAR---LGIGYvpegrrIFP 91
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  90 HFnllnsaTVFKNVAMPLILsKKSKTEIKQRVTEMLE-FVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEAT 168
Cdd:COG0410   92 SL------TVEENLLLGAYA-RRDRAEVRADLERVYElFPRLKERRRQRAGTLSGGEQQMLAIGRALMSRPKLLLLDEPS 164
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 493203783 169 SALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPK 233
Cdd:COG0410  165 LGLAPLIVEEIFEIIRRLNRE-GVTILLVEQNARFALEIADRAYVLERGRIVLEGTAAELLADPE 228
PRK10584 PRK10584
putative ABC transporter ATP-binding protein YbbA; Provisional
1-221 1.03e-38

putative ABC transporter ATP-binding protein YbbA; Provisional


Pssm-ID: 182569 [Multi-domain]  Cd Length: 228  Bit Score: 137.22  E-value: 1.03e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRDI 80
Cdd:PRK10584   6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 K-KDIGMIFQHFNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNP 159
Cdd:PRK10584  86 RaKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRP 165
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 493203783 160 KILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDiCNRVAVMEKGQVVE 221
Cdd:PRK10584 166 DVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAAR-CDRRLRLVNGQLQE 226
ABCC_MsbA cd03251
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ...
2-224 1.31e-38

ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213218 [Multi-domain]  Cd Length: 234  Bit Score: 136.98  E-value: 1.31e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSksFHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSdkmMRDIK 81
Cdd:cd03251    1 VEFKNVT--FRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYT---LASLR 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 KDIGMIFQHFNLLNSaTVFKNVAmpliLSKKSKTEikQRVTEMLEFVGLSDKKDQFPD-----------ELSGGQKQRVA 150
Cdd:cd03251   76 RQIGLVSQDVFLFND-TVAENIA----YGRPGATR--EEVEEAARAANAHEFIMELPEgydtvigergvKLSGGQRQRIA 148
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 493203783 151 IARALVTNPKILLCDEATSALDPAT----TASILTLLKNVnqtfgiTIMMITHEMRVIKDIcNRVAVMEKGQVVETGT 224
Cdd:cd03251  149 IARALLKDPPILILDEATSALDTESerlvQAALERLMKNR------TTFVIAHRLSTIENA-DRIVVLEDGKIVERGT 219
cbiO PRK13640
energy-coupling factor transporter ATPase;
2-261 1.52e-38

energy-coupling factor transporter ATPase;


Pssm-ID: 184200 [Multi-domain]  Cd Length: 282  Bit Score: 138.39  E-value: 1.52e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHKKKQTidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHL---EAASNGQVIVDGhdiMNYSDKMMR 78
Cdd:PRK13640   6 VEFKHVSFTYPDSKKP--ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLllpDDNPNSKITVDG---ITLTAKTVW 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  79 DIKKDIGMIFQH-FNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVT 157
Cdd:PRK13640  81 DIREKVGIVFQNpDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAV 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 158 NPKILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRViKDICNRVAVMEKGQVVETGTVKEVFshPKTTIA 237
Cdd:PRK13640 161 EPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-ANMADQVLVLDDGKLLAQGSPVEIF--SKVEML 237
                        250       260       270
                 ....*....|....*....|....*....|..
gi 493203783 238 QN------FVSTVIQ--TEPSTSLIRRLNDEQ 261
Cdd:PRK13640 238 KEigldipFVYKLKNklKEKGISVPQEINTEE 269
ABC_Carb_Monos_I cd03216
First domain of the ATP-binding cassette component of monosaccharide transport system; This ...
2-222 2.51e-38

First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.


Pssm-ID: 213183 [Multi-domain]  Cd Length: 163  Bit Score: 134.09  E-value: 2.51e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHKKKqtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRDIK 81
Cdd:cd03216    1 LELRGITKRFGGVK----ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAG 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 kdIGMIFQhfnllnsatvfknvamplilskkskteikqrvtemlefvglsdkkdqfpdeLSGGQKQRVAIARALVTNPKI 161
Cdd:cd03216   77 --IAMVYQ---------------------------------------------------LSVGERQMVEIARALARNARL 103
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 493203783 162 LLCDEATSALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQVVET 222
Cdd:cd03216  104 LILDEPTAALTPAEVERLFKVIRRLRAQ-GVAVIFISHRLDEVFEIADRVTVLRDGRVVGT 163
PRK09984 PRK09984
phosphonate ABC transporter ATP-binding protein;
1-231 2.65e-38

phosphonate ABC transporter ATP-binding protein;


Pssm-ID: 182182 [Multi-domain]  Cd Length: 262  Bit Score: 137.07  E-value: 2.65e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKKqtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRlvnHLEAASNGQVIVDGH-----DIMNYSDK 75
Cdd:PRK09984   4 IIRVEKLAKTFNQHQ----ALHAVDLNIHHGEMVALLGPSGSGKSTLLR---HLSGLITGDKSAGSHiellgRTVQREGR 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  76 MMRDIKKD---IGMIFQHFNLLNSATVFKNVAMPLILS--------KKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGG 144
Cdd:PRK09984  77 LARDIRKSranTGYIFQQFNLVNRLSVLENVLIGALGStpfwrtcfSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGG 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 145 QKQRVAIARALVTNPKILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGT 224
Cdd:PRK09984 157 QQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGS 236
                        250
                 ....*....|.
gi 493203783 225 VK----EVFSH 231
Cdd:PRK09984 237 SQqfdnERFDH 247
SapD COG4170
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
17-232 3.42e-38

ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];


Pssm-ID: 443330 [Multi-domain]  Cd Length: 331  Bit Score: 138.50  E-value: 3.42e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  17 TIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVR-LVNHLEaaSNGQVIVD-----GHDIMNYSDKMMRDI-KKDIGMIFQ 89
Cdd:COG4170   19 RVKAVDRVSLTLNEGEIRGLVGESGSGKSLIAKaICGITK--DNWHVTADrfrwnGIDLLKLSPRERRKIiGREIAMIFQ 96
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  90 HFN--LLNSATVFKNV--AMPLILSK----KSKTEIKQRVTEMLEFVGLSDKKD---QFPDELSGGQKQRVAIARALVTN 158
Cdd:COG4170   97 EPSscLDPSAKIGDQLieAIPSWTFKgkwwQRFKWRKKRAIELLHRVGIKDHKDimnSYPHELTEGECQKVMIAMAIANQ 176
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 493203783 159 PKILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHP 232
Cdd:COG4170  177 PRLLIADEPTNAMESTTQAQIFRLLARLNQLQGTSILLISHDLESISQWADTITVLYCGQTVESGPTEQILKSP 250
ABC_cobalt_CbiO_domain2 cd03226
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ...
7-220 5.43e-38

Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.


Pssm-ID: 213193 [Multi-domain]  Cd Length: 205  Bit Score: 134.69  E-value: 5.43e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   7 VSKSFHKKkqtIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNysdkmmRDIKKDIGM 86
Cdd:cd03226    5 ISFSYKKG---TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA------KERRKSIGY 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  87 IFQHfnlLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDE 166
Cdd:cd03226   76 VMQD---VDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDE 152
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 493203783 167 ATSALDPATTASILTLLKNVnQTFGITIMMITHEMRVIKDICNRVAVMEKGQVV 220
Cdd:cd03226  153 PTSGLDYKNMERVGELIREL-AAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
ABC_YhbG cd03218
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ...
2-233 1.04e-37

ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.


Pssm-ID: 213185 [Multi-domain]  Cd Length: 232  Bit Score: 134.59  E-value: 1.04e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHKKKqtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSdkMMRDIK 81
Cdd:cd03218    1 LRAENLSKRYGKRK----VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLP--MHKRAR 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 KDIGMIFQHFNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKI 161
Cdd:cd03218   75 LGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKF 154
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 493203783 162 LLCDEATSALDPATTASILTLLKNVNQtFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPK 233
Cdd:cd03218  155 LLLDEPFAGVDPIAVQDIQKIIKILKD-RGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANEL 225
dppD PRK11022
dipeptide transporter ATP-binding subunit; Provisional
6-233 1.06e-37

dipeptide transporter ATP-binding subunit; Provisional


Pssm-ID: 182906 [Multi-domain]  Cd Length: 326  Bit Score: 137.18  E-value: 1.06e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   6 QVSKSFHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKS----TLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRDI- 80
Cdd:PRK11022   8 KLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSvsslAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLv 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 KKDIGMIFQhfNLLNSATVFKNVAMPLILSKK-----SKTEIKQRVTEMLEFVGLSD---KKDQFPDELSGGQKQRVAIA 152
Cdd:PRK11022  88 GAEVAMIFQ--DPMTSLNPCYTVGFQIMEAIKvhqggNKKTRRQRAIDLLNQVGIPDpasRLDVYPHQLSGGMSQRVMIA 165
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 153 RALVTNPKILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHP 232
Cdd:PRK11022 166 MAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAP 245

                 .
gi 493203783 233 K 233
Cdd:PRK11022 246 R 246
met_CoM_red_A2 TIGR03269
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ...
1-230 1.14e-37

methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]


Pssm-ID: 132313 [Multi-domain]  Cd Length: 520  Bit Score: 141.09  E-value: 1.14e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783    1 MIEFRQVSKSFHK-KKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVD-GHDIMNYSDK--M 76
Cdd:TIGR03269 279 IIKVRNVSKRYISvDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRvGDEWVDMTKPgpD 358
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   77 MRD-IKKDIGMIFQHFNLLNSATVFKNV--AMPLILSKKSKteiKQRVTEMLEFVGLSDKK-----DQFPDELSGGQKQR 148
Cdd:TIGR03269 359 GRGrAKRYIGILHQEYDLYPHRTVLDNLteAIGLELPDELA---RMKAVITLKMVGFDEEKaeeilDKYPDELSEGERHR 435
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  149 VAIARALVTNPKILLCDEATSALDPAT----TASILTLLKNVNQTFGItimmITHEMRVIKDICNRVAVMEKGQVVETGT 224
Cdd:TIGR03269 436 VALAQVLIKEPRIVILDEPTGTMDPITkvdvTHSILKAREEMEQTFII----VSHDMDFVLDVCDRAALMRDGKIVKIGD 511

                  ....*.
gi 493203783  225 VKEVFS 230
Cdd:TIGR03269 512 PEEIVE 517
PRK14246 PRK14246
phosphate ABC transporter ATP-binding protein; Provisional
21-241 1.58e-37

phosphate ABC transporter ATP-binding protein; Provisional


Pssm-ID: 172734 [Multi-domain]  Cd Length: 257  Bit Score: 135.17  E-value: 1.58e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  21 LKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRD---IKKDIGMIFQHFNLLNSA 97
Cdd:PRK14246  26 LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDaikLRKEVGMVFQQPNPFPHL 105
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  98 TVFKNVAMPLILSK-KSKTEIKQRVTEMLEFVGL----SDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEATSALD 172
Cdd:PRK14246 106 SIYDNIAYPLKSHGiKEKREIKKIVEECLRKVGLwkevYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMID 185
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 493203783 173 PATTASILTLLKNVNQTfgITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPKTTIAQNFV 241
Cdd:PRK14246 186 IVNSQAIEKLITELKNE--IAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELTEKYV 252
modC_ABC TIGR02142
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ...
23-245 1.72e-37

molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]


Pssm-ID: 131197 [Multi-domain]  Cd Length: 354  Bit Score: 137.55  E-value: 1.72e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   23 DVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRDI-KKDIGMIFQHFNLLNSATVFK 101
Cdd:TIGR02142  15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPeKRRIGYVFQEARLFPHLSVRG 94
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  102 NVAMPLILSKKSKTEIK-QRVTEMLefvGLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEATSALDPATTASIL 180
Cdd:TIGR02142  95 NLRYGMKRARPSERRISfERVIELL---GIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEIL 171
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 493203783  181 TLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPK-TTIAQNFVSTVI 245
Cdd:TIGR02142 172 PYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDlPWLAREDQGSLI 237
PRK10535 PRK10535
macrolide ABC transporter ATP-binding protein/permease MacB;
1-203 3.44e-37

macrolide ABC transporter ATP-binding protein/permease MacB;


Pssm-ID: 182528 [Multi-domain]  Cd Length: 648  Bit Score: 141.01  E-value: 3.44e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNY-SDKMMRD 79
Cdd:PRK10535   4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLdADALAQL 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  80 IKKDIGMIFQHFNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNP 159
Cdd:PRK10535  84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGG 163
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 493203783 160 KILLCDEATSALDPATTASILTLLKNVNQTfGITIMMITHEMRV 203
Cdd:PRK10535 164 QVILADEPTGALDSHSGEEVMAILHQLRDR-GHTVIIVTHDPQV 206
LptB COG1137
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ...
1-233 3.82e-37

ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440752 [Multi-domain]  Cd Length: 240  Bit Score: 133.23  E-value: 3.82e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKKqtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSdkMMRDI 80
Cdd:COG1137    3 TLEAENLVKSYGKRT----VVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDITHLP--MHKRA 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 KKDIGM------IFQhfNLlnsaTVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARA 154
Cdd:COG1137   77 RLGIGYlpqeasIFR--KL----TVEDNILAVLELRKLSKKEREERLEELLEEFGITHLRKSKAYSLSGGERRRVEIARA 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 155 LVTNPKILLCDEATSALDPATTASILTL---LKNvnqtFGITImMIT-HEMRVIKDICNRVAVMEKGQVVETGTVKEVFS 230
Cdd:COG1137  151 LATNPKFILLDEPFAGVDPIAVADIQKIirhLKE----RGIGV-LITdHNVRETLGICDRAYIISEGKVLAEGTPEEILN 225

                 ...
gi 493203783 231 HPK 233
Cdd:COG1137  226 NPL 228
ATM1 COG5265
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ...
2-224 4.65e-37

ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444078 [Multi-domain]  Cd Length: 605  Bit Score: 140.34  E-value: 4.65e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHKKKQtIdaLKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRdik 81
Cdd:COG5265  358 VRFENVSFGYDPERP-I--LKGVSFEVPAGKTVAIVGPSGAGKSTLARLLFRFYDVTSGRILIDGQDIRDVTQASLR--- 431
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 KDIGMIFQH---FNllnsATVFKNVAM--PlilsKKSKTEIKQ--RVTEMLEFV-GLSDKKDQFPDE----LSGGQKQRV 149
Cdd:COG5265  432 AAIGIVPQDtvlFN----DTIAYNIAYgrP----DASEEEVEAaaRAAQIHDFIeSLPDGYDTRVGErglkLSGGEKQRV 503
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 493203783 150 AIARALVTNPKILLCDEATSALDPATTASILTLLKNVNQtfGITIMMITHEMRVIKDiCNRVAVMEKGQVVETGT 224
Cdd:COG5265  504 AIARTLLKNPPILIFDEATSALDSRTERAIQAALREVAR--GRTTLVIAHRLSTIVD-ADEILVLEAGRIVERGT 575
cbiO PRK13645
energy-coupling factor transporter ATPase;
7-249 5.25e-37

energy-coupling factor transporter ATPase;


Pssm-ID: 184204 [Multi-domain]  Cd Length: 289  Bit Score: 134.36  E-value: 5.25e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   7 VSKSFHKKKQ-TIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKM--MRDIKKD 83
Cdd:PRK13645  12 VSYTYAKKTPfEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIkeVKRLRKE 91
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  84 IGMIFQ--HFNLLNSaTVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGL-SDKKDQFPDELSGGQKQRVAIARALVTNPK 160
Cdd:PRK13645  92 IGLVFQfpEYQLFQE-TIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLpEDYVKRSPFELSGGQKRRVALAGIIAMDGN 170
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 161 ILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPKttiaqnf 240
Cdd:PRK13645 171 TLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSNQE------- 243

                 ....*....
gi 493203783 241 VSTVIQTEP 249
Cdd:PRK13645 244 LLTKIEIDP 252
ABCC_Glucan_exporter_like cd03254
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ...
2-229 5.62e-37

ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213221 [Multi-domain]  Cd Length: 229  Bit Score: 132.73  E-value: 5.62e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHKKKQTidaLKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRdik 81
Cdd:cd03254    3 IEFENVNFSYDEKKPV---LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLR--- 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 KDIGMIFQHFNLLnSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFV-GLSDKKDQFPDE----LSGGQKQRVAIARALV 156
Cdd:cd03254   77 SMIGVVLQDTFLF-SGTIMENIRLGRPNATDEEVIEAAKEAGAHDFImKLPNGYDTVLGEnggnLSQGERQLLAIARAML 155
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 493203783 157 TNPKILLCDEATSALDPATTASILTLLKNVNQtfGITIMMITHEMRVIKDiCNRVAVMEKGQVVETGTVKEVF 229
Cdd:cd03254  156 RDPKILILDEATSNIDTETEKLIQEALEKLMK--GRTSIIIAHRLSTIKN-ADKILVLDDGKIIEEGTHDELL 225
ugpC PRK11650
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
1-245 7.11e-37

sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;


Pssm-ID: 236947 [Multi-domain]  Cd Length: 356  Bit Score: 135.74  E-value: 7.11e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKKQtidALKDVSFTVnHNDIFGVI-GYSGAGKSTLVRLVNHLEAASNGQVIVDGHDImnySDKMMRD 79
Cdd:PRK11650   3 GLKLQAVRKSYDGKTQ---VIKGIDLDV-ADGEFIVLvGPSGCGKSTLLRMVAGLERITSGEIWIGGRVV---NELEPAD 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  80 ikKDIGMIFQHFNLLNSATVFKNVAMPLILSKKSKTEIKQRVTE---MLEFVGLSDKKdqfPDELSGGQKQRVAIARALV 156
Cdd:PRK11650  76 --RDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEaarILELEPLLDRK---PRELSGGQRQRVAMGRAIV 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 157 TNPKILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITH---EMRVIKDicnRVAVMEKGQVVETGTVKEVFSHPK 233
Cdd:PRK11650 151 REPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHdqvEAMTLAD---RVVVMNGGVAEQIGTPVEVYEKPA 227
                        250
                 ....*....|..
gi 493203783 234 TTiaqnFVSTVI 245
Cdd:PRK11650 228 ST----FVASFI 235
cbiO PRK13631
cobalt transporter ATP-binding subunit; Provisional
13-245 1.05e-36

cobalt transporter ATP-binding subunit; Provisional


Pssm-ID: 237451 [Multi-domain]  Cd Length: 320  Bit Score: 134.59  E-value: 1.05e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  13 KKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQV----IVDGHDIMNYSD---------KMMRD 79
Cdd:PRK13631  34 KQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIqvgdIYIGDKKNNHELitnpyskkiKNFKE 113
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  80 IKKDIGMIFQ--HFNLLNSaTVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGL-SDKKDQFPDELSGGQKQRVAIARALV 156
Cdd:PRK13631 114 LRRRVSMVFQfpEYQLFKD-TIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLdDSYLERSPFGLSGGQKRRVAIAGILA 192
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 157 TNPKILLCDEATSALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHP---- 232
Cdd:PRK13631 193 IQPEILIFDEPTAGLDPKGEHEMMQLILDAKAN-NKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQhiin 271
                        250
                 ....*....|...
gi 493203783 233 KTTIAQNFVSTVI 245
Cdd:PRK13631 272 STSIQVPRVIQVI 284
ABC_putative_ATPase cd03269
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ...
2-223 1.55e-36

ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213236 [Multi-domain]  Cd Length: 210  Bit Score: 130.86  E-value: 1.55e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHKKKqtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHdimnysdKMMRDIK 81
Cdd:cd03269    1 LEVENVTKRFGRVT----ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGK-------PLDIAAR 69
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 KDIGMIFQHFNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKI 161
Cdd:cd03269   70 NRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPEL 149
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 493203783 162 LLCDEATSALDPATTASILTLLKNVnQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETG 223
Cdd:cd03269  150 LILDEPFSGLDPVNVELLKDVIREL-ARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
MsbA_lipidA TIGR02203
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ...
2-231 2.98e-36

lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]


Pssm-ID: 131258 [Multi-domain]  Cd Length: 571  Bit Score: 137.54  E-value: 2.98e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783    2 IEFRQVSksFHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSdkmMRDIK 81
Cdd:TIGR02203 331 VEFRNVT--FRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYT---LASLR 405
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   82 KDIGMIFQHFNLLNSaTVFKNVAMplilsKKSKTEIKQRVTEMLEFVGLSDKKDQFPD-----------ELSGGQKQRVA 150
Cdd:TIGR02203 406 RQVALVSQDVVLFND-TIANNIAY-----GRTEQADRAEIERALAAAYAQDFVDKLPLgldtpigengvLLSGGQRQRLA 479
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  151 IARALVTNPKILLCDEATSALDPATTASILTLLKNVNQtfGITIMMITHEMRVIKDiCNRVAVMEKGQVVETGTVKEVFS 230
Cdd:TIGR02203 480 IARALLKDAPILILDEATSALDNESERLVQAALERLMQ--GRTTLVIAHRLSTIEK-ADRIVVMDDGRIVERGTHNELLA 556

                  .
gi 493203783  231 H 231
Cdd:TIGR02203 557 R 557
thiQ PRK10771
thiamine ABC transporter ATP-binding protein ThiQ;
25-230 3.84e-36

thiamine ABC transporter ATP-binding protein ThiQ;


Pssm-ID: 182716 [Multi-domain]  Cd Length: 232  Bit Score: 130.47  E-value: 3.84e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  25 SFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKmmrdiKKDIGMIFQHFNLLNSATVFKNVA 104
Cdd:PRK10771  19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS-----RRPVSMLFQENNLFSHLTVAQNIG 93
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 105 MPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEATSALDPATTASILTLLK 184
Cdd:PRK10771  94 LGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVS 173
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 493203783 185 NVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFS 230
Cdd:PRK10771 174 QVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219
ABCC_MRP_domain2 cd03244
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ...
2-224 5.70e-36

ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.


Pssm-ID: 213211 [Multi-domain]  Cd Length: 221  Bit Score: 129.54  E-value: 5.70e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHKKKQTidALKDVSFTVNHNDIFGVIGYSGAGKSTLV----RLVNhleaASNGQVIVDGHDImnySDKMM 77
Cdd:cd03244    3 IEFKNVSLRYRPNLPP--VLKNISFSIKPGEKVGIVGRTGSGKSSLLlalfRLVE----LSSGSILIDGVDI---SKIGL 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  78 RDIKKDIGMIFQHfNLLNSATVFKNVAmplILSKKSKTEIKQrvteMLEFVGLSDKKDQFPDEL-----------SGGQK 146
Cdd:cd03244   74 HDLRSRISIIPQD-PVLFSGTIRSNLD---PFGEYSDEELWQ----ALERVGLKEFVESLPGGLdtvveeggenlSVGQR 145
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 493203783 147 QRVAIARALVTNPKILLCDEATSALDPATTASILTLLKnvNQTFGITIMMITHEMRVIKDiCNRVAVMEKGQVVETGT 224
Cdd:cd03244  146 QLLCLARALLRKSKILVLDEATASVDPETDALIQKTIR--EAFKDCTVLTIAHRLDTIID-SDRILVLDKGRVVEFDS 220
PhnK COG1101
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ...
1-220 6.02e-36

ABC-type uncharacterized transport system, ATPase component [General function prediction only];


Pssm-ID: 440718 [Multi-domain]  Cd Length: 264  Bit Score: 130.98  E-value: 6.02e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKkkQTID---ALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNysdkmM 77
Cdd:COG1101    1 MLELKNLSKTFNP--GTVNekrALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVTK-----L 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  78 RDIK--KDIGMIFQhfN-LLNSA---TVFKNVAM--------PLI--LSKKSKTEIKQRVTEM-LefvGLSDKKDQFPDE 140
Cdd:COG1101   74 PEYKraKYIGRVFQ--DpMMGTApsmTIEENLALayrrgkrrGLRrgLTKKRRELFRELLATLgL---GLENRLDTKVGL 148
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 141 LSGGQKQRVAIARALVTNPKILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVV 220
Cdd:COG1101  149 LSGGQRQALSLLMATLTKPKLLLLDEHTAALDPKTAALVLELTEKIVEENNLTTLMVTHNMEQALDYGNRLIMMHEGRII 228
PRK15134 PRK15134
microcin C ABC transporter ATP-binding protein YejF; Provisional
1-234 1.20e-35

microcin C ABC transporter ATP-binding protein YejF; Provisional


Pssm-ID: 237917 [Multi-domain]  Cd Length: 529  Bit Score: 135.60  E-value: 1.20e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAAS-----NGQVIVDGHDIMNYSDK 75
Cdd:PRK15134   5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPpvvypSGDIRFHGESLLHASEQ 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  76 MMRDIKKD-IGMIFQH----FNLLNsaTVFKNVAMPLILSKKSKTEIKQrvTEM---LEFVGLSDKKDQ---FPDELSGG 144
Cdd:PRK15134  85 TLRGVRGNkIAMIFQEpmvsLNPLH--TLEKQLYEVLSLHRGMRREAAR--GEIlncLDRVGIRQAAKRltdYPHQLSGG 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 145 QKQRVAIARALVTNPKILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGT 224
Cdd:PRK15134 161 ERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNR 240
                        250
                 ....*....|...
gi 493203783 225 VKEVFS---HPKT 234
Cdd:PRK15134 241 AATLFSaptHPYT 253
ssuB PRK11247
aliphatic sulfonates transport ATP-binding subunit; Provisional
5-219 1.59e-35

aliphatic sulfonates transport ATP-binding subunit; Provisional


Pssm-ID: 183055 [Multi-domain]  Cd Length: 257  Bit Score: 129.80  E-value: 1.59e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   5 RQVSKSFHKKkqTIdaLKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVdghdimnySDKMMRDIKKDI 84
Cdd:PRK11247  16 NAVSKRYGER--TV--LNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLA--------GTAPLAEAREDT 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  85 GMIFQHFNLLNSATVFKNVAMPLilskksKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLC 164
Cdd:PRK11247  84 RLMFQDARLLPWKKVIDNVGLGL------KGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLL 157
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 493203783 165 DEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQV 219
Cdd:PRK11247 158 DEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
TagH COG1134
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ...
1-231 5.32e-35

ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];


Pssm-ID: 440749 [Multi-domain]  Cd Length: 245  Bit Score: 127.89  E-value: 5.32e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFH------------------KKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQV 62
Cdd:COG1134    4 MIEVENVSKSYRlyhepsrslkelllrrrrTRREEFWALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRV 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  63 IVDGhdimnysdkmmrdikK-----DIGMIFQhfnllNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQf 137
Cdd:COG1134   84 EVNG---------------RvsallELGAGFH-----PELTGRENIYLNGRLLGLSRKEIDEKFDEIVEFAELGDFIDQ- 142
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 138 P-DELSGGQKQRVAIARALVTNPKILLCDEATSALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEK 216
Cdd:COG1134  143 PvKTYSSGMRARLAFAVATAVDPDILLVDEVLAVGDAAFQKKCLARIRELRES-GRTVIFVSHSMGAVRRLCDRAIWLEK 221
                        250
                 ....*....|....*
gi 493203783 217 GQVVETGTVKEVFSH 231
Cdd:COG1134  222 GRLVMDGDPEEVIAA 236
cbiO PRK13641
energy-coupling factor transporter ATPase;
2-266 6.36e-35

energy-coupling factor transporter ATPase;


Pssm-ID: 237456 [Multi-domain]  Cd Length: 287  Bit Score: 128.79  E-value: 6.36e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVS------KSFHKKkqtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDI-MNYSD 74
Cdd:PRK13641   3 IKFENVDyiyspgTPMEKK-----GLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHItPETGN 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  75 KMMRDIKKDIGMIFQhF--NLLNSATVFKNVAM-PLILSKkSKTEIKQRVTEMLEFVGLSDK-KDQFPDELSGGQKQRVA 150
Cdd:PRK13641  78 KNLKKLRKKVSLVFQ-FpeAQLFENTVLKDVEFgPKNFGF-SEDEAKEKALKWLKKVGLSEDlISKSPFELSGGQMRRVA 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 151 IARALVTNPKILLCDEATSALDPATTASILTLLKNVnQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFS 230
Cdd:PRK13641 156 IAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDY-QKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234
                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 493203783 231 HPKtTIAQNFVStviqtEPSTSLIRRlnDEQVGDFK 266
Cdd:PRK13641 235 DKE-WLKKHYLD-----EPATSRFAS--KLEKGGFK 262
ModF COG1119
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ...
1-229 1.19e-34

ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];


Pssm-ID: 440736 [Multi-domain]  Cd Length: 250  Bit Score: 127.12  E-value: 1.19e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKkqTIdaLKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVN-HLEAASNGQVIVDGHDIMNYSdkmMRD 79
Cdd:COG1119    3 LLELRNVTVRRGGK--TI--LDDISWTVKPGEHWAILGPNGAGKSTLLSLITgDLPPTYGNDVRLFGERRGGED---VWE 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  80 IKKDIGMI--FQHFNLLNSATVFkNVamplILS---------KKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQR 148
Cdd:COG1119   76 LRKRIGLVspALQLRFPRDETVL-DV----VLSgffdsiglyREPTDEQRERARELLELLGLAHLADRPFGTLSQGEQRR 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 149 VAIARALVTNPKILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEV 228
Cdd:COG1119  151 VLIARALVKDPELLILDEPTAGLDLGARELLLALLDKLAAEGAPTLVLVTHHVEEIPPGITHVLLLKDGRVVAAGPKEEV 230

                 .
gi 493203783 229 F 229
Cdd:COG1119  231 L 231
PRK13657 PRK13657
glucan ABC transporter ATP-binding protein/ permease;
2-227 3.60e-34

glucan ABC transporter ATP-binding protein/ permease;


Pssm-ID: 184214 [Multi-domain]  Cd Length: 588  Bit Score: 132.01  E-value: 3.60e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHKKKQtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDImnySDKMMRDIK 81
Cdd:PRK13657 335 VEFDDVSFSYDNSRQ---GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDI---RTVTRASLR 408
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 KDIGMIFQHFNLLNsatvfKNVAMPLILSKKSKTEIKQR----VTEMLEFV-GLSDKKDQFPDE----LSGGQKQRVAIA 152
Cdd:PRK13657 409 RNIAVVFQDAGLFN-----RSIEDNIRVGRPDATDEEMRaaaeRAQAHDFIeRKPDGYDTVVGErgrqLSGGERQRLAIA 483
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 493203783 153 RALVTNPKILLCDEATSALDPATTASILTLLKNVNQtfGITIMMITHEMRVIKDiCNRVAVMEKGQVVETGTVKE 227
Cdd:PRK13657 484 RALLKDPPILILDEATSALDVETEAKVKAALDELMK--GRTTFIIAHRLSTVRN-ADRILVFDNGRVVESGSFDE 555
met_CoM_red_A2 TIGR03269
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ...
2-230 4.50e-34

methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]


Pssm-ID: 132313 [Multi-domain]  Cd Length: 520  Bit Score: 131.08  E-value: 4.50e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783    2 IEFRQVSKSFHKKKqtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASN--GQVIV--------------- 64
Cdd:TIGR03269   1 IEVKNLTKKFDGKE----VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPtsGRIIYhvalcekcgyverps 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   65 -DGH--------------DIMNYSDKMMRDIKKDIGMIFQH-FNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFV 128
Cdd:TIGR03269  77 kVGEpcpvcggtlepeevDFWNLSDKLRRRIRKRIAIMLQRtFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMV 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  129 GLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDIC 208
Cdd:TIGR03269 157 QLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLS 236
                         250       260
                  ....*....|....*....|..
gi 493203783  209 NRVAVMEKGQVVETGTVKEVFS 230
Cdd:TIGR03269 237 DKAIWLENGEIKEEGTPDEVVA 258
ABCC_Protease_Secretion cd03246
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ...
21-219 5.87e-34

ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.


Pssm-ID: 213213 [Multi-domain]  Cd Length: 173  Bit Score: 123.10  E-value: 5.87e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  21 LKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRDIkkdIGMIFQHFNLLnSATVF 100
Cdd:cd03246   18 LRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDH---VGYLPQDDELF-SGSIA 93
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 101 KNVamplilskkskteikqrvtemlefvglsdkkdqfpdeLSGGQKQRVAIARALVTNPKILLCDEATSALDPATTASIL 180
Cdd:cd03246   94 ENI-------------------------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALN 136
                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 493203783 181 TLLKNVnQTFGITIMMITHEMRVIKdICNRVAVMEKGQV 219
Cdd:cd03246  137 QAIAAL-KAAGATRIVIAHRPETLA-SADRILVLEDGRV 173
NHLM_micro_ABC2 TIGR03797
NHLM bacteriocin system ABC transporter, ATP-binding protein; Members of this protein family ...
2-227 7.10e-34

NHLM bacteriocin system ABC transporter, ATP-binding protein; Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes. [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]


Pssm-ID: 274789 [Multi-domain]  Cd Length: 686  Bit Score: 131.62  E-value: 7.10e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783    2 IEFRQVSksFHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDImnySDKMMRDIK 81
Cdd:TIGR03797 452 IEVDRVT--FRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDL---AGLDVQAVR 526
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   82 KDIGMIFQHFNLLnSATVFKNVAMPLILSKKskteikqRVTEMLEFVGLSDKKDQFP-------DE----LSGGQKQRVA 150
Cdd:TIGR03797 527 RQLGVVLQNGRLM-SGSIFENIAGGAPLTLD-------EAWEAARMAGLAEDIRAMPmgmhtviSEgggtLSGGQRQRLL 598
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 493203783  151 IARALVTNPKILLCDEATSALDPATTASILTLLKNVNqtfgITIMMITHEMRVIKDiCNRVAVMEKGQVVETGTVKE 227
Cdd:TIGR03797 599 IARALVRKPRILLFDEATSALDNRTQAIVSESLERLK----VTRIVIAHRLSTIRN-ADRIYVLDAGRVVQQGTYDE 670
PRK11000 PRK11000
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
4-249 1.08e-33

maltose/maltodextrin ABC transporter ATP-binding protein MalK;


Pssm-ID: 182893 [Multi-domain]  Cd Length: 369  Bit Score: 127.45  E-value: 1.08e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   4 FRQVSKSFHKKKQTidalKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDghdimnysDKMMRDI--- 80
Cdd:PRK11000   6 LRNVTKAYGDVVIS----KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIG--------EKRMNDVppa 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 KKDIGMIFQHFNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPK 160
Cdd:PRK11000  74 ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPS 153
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 161 ILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPKTTIA--- 237
Cdd:PRK11000 154 VFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPANRFVagf 233
                        250
                 ....*....|....*...
gi 493203783 238 -----QNFVS-TVIQTEP 249
Cdd:PRK11000 234 igspkMNFLPvKVTATAI 251
cbiO PRK13644
energy-coupling factor transporter ATPase;
1-232 1.22e-33

energy-coupling factor transporter ATPase;


Pssm-ID: 106587 [Multi-domain]  Cd Length: 274  Bit Score: 125.10  E-value: 1.22e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFhkkKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDkmMRDI 80
Cdd:PRK13644   1 MIRLENVSYSY---PDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSK--LQGI 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 KKDIGMIFQhfnllNSATVF-------------KNVAMPlilskksKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQ 147
Cdd:PRK13644  76 RKLVGIVFQ-----NPETQFvgrtveedlafgpENLCLP-------PIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQ 143
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 148 RVAIARALVTNPKILLCDEATSALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDiCNRVAVMEKGQVVETGTVKE 227
Cdd:PRK13644 144 CVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEK-GKTIVYITHNLEELHD-ADRIIVMDRGKIVLEGEPEN 221

                 ....*
gi 493203783 228 VFSHP 232
Cdd:PRK13644 222 VLSDV 226
cbiO PRK13643
energy-coupling factor transporter ATPase;
1-229 3.04e-33

energy-coupling factor transporter ATPase;


Pssm-ID: 184203 [Multi-domain]  Cd Length: 288  Bit Score: 124.46  E-value: 3.04e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKKQTID-ALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYS-DKMMR 78
Cdd:PRK13643   1 MIKFEKVNYTYQPNSPFASrALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSkQKEIK 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  79 DIKKDIGMIFQH-FNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDK-KDQFPDELSGGQKQRVAIARALV 156
Cdd:PRK13643  81 PVRKKVGVVFQFpESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEfWEKSPFELSGGQMRRVAIAGILA 160
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 493203783 157 TNPKILLCDEATSALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVF 229
Cdd:PRK13643 161 MEPEVLVLDEPTAGLDPKARIEMMQLFESIHQS-GQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVF 232
COG4586 COG4586
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ...
1-234 4.33e-33

ABC-type uncharacterized transport system, ATPase component [General function prediction only];


Pssm-ID: 443643 [Multi-domain]  Cd Length: 323  Bit Score: 124.81  E-value: 4.33e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKS-----------------FHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVI 63
Cdd:COG4586    1 IIEVENLSKTyrvyekepglkgalkglFRREYREVEAVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVR 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  64 VDGHDImnYSDKmmRDIKKDIGMIF-Q----HFNLlnsatvfknvamPLI----LSKK----SKTEIKQRVTEMLEFVGL 130
Cdd:COG4586   81 VLGYVP--FKRR--KEFARRIGVVFgQrsqlWWDL------------PAIdsfrLLKAiyriPDAEYKKRLDELVELLDL 144
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 131 SDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNR 210
Cdd:COG4586  145 GELLDTPVRQLSLGQRMRCELAAALLHRPKILFLDEPTIGLDVVSKEAIREFLKEYNRERGTTILLTSHDMDDIEALCDR 224
                        250       260
                 ....*....|....*....|....*..
gi 493203783 211 VAVMEKGQVVETGTV---KEVFSHPKT 234
Cdd:COG4586  225 VIVIDHGRIIYDGSLeelKERFGPYKT 251
PRK13651 PRK13651
cobalt transporter ATP-binding subunit; Provisional
2-243 9.27e-33

cobalt transporter ATP-binding subunit; Provisional


Pssm-ID: 184210 [Multi-domain]  Cd Length: 305  Bit Score: 123.66  E-value: 9.27e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHKKKQT-IDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSD------ 74
Cdd:PRK13651   3 IKVKNIVKIFNKKLPTeLKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKtkekek 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  75 ---------------KMMRDIKKDIGMIFQ--HFNLLNSaTVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKK-DQ 136
Cdd:PRK13651  83 vleklviqktrfkkiKKIKEIRRRVGVVFQfaEYQLFEQ-TIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYlQR 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 137 FPDELSGGQKQRVAIARALVTNPKILLCDEATSALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEK 216
Cdd:PRK13651 162 SPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQ-GKTIILVTHDLDNVLEWTKRTIFFKD 240
                        250       260
                 ....*....|....*....|....*..
gi 493203783 217 GQVVETGTVKEVFSHPKTTIAQNFVST 243
Cdd:PRK13651 241 GKIIKDGDTYDILSDNKFLIENNMEPP 267
urea_trans_UrtE TIGR03410
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC ...
20-228 9.79e-33

urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274567 [Multi-domain]  Cd Length: 230  Bit Score: 121.48  E-value: 9.79e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   20 ALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMrdIKKDIG------MIFQHFnl 93
Cdd:TIGR03410  15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHER--ARAGIAyvpqgrEIFPRL-- 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   94 lnsaTVFKNVAMPLILSKKSKTEIKQRVTEMleFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEATSALDP 173
Cdd:TIGR03410  91 ----TVEENLLTGLAALPRRSRKIPDEIYEL--FPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQP 164
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 493203783  174 ATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEV 228
Cdd:TIGR03410 165 SIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219
ABC_KpsT_Wzt cd03220
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ...
2-223 1.15e-32

ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.


Pssm-ID: 213187 [Multi-domain]  Cd Length: 224  Bit Score: 121.10  E-value: 1.15e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFH------------------KKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVI 63
Cdd:cd03220    1 IELENVSKSYPtykggssslkklgilgrkGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVT 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  64 VDGhdimnysdkmmrdikKDIGMIFQHFNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSG 143
Cdd:cd03220   81 VRG---------------RVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSS 145
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 144 GQKQRVAIARALVTNPKILLCDEATSALDPATTASILTLLKNVNQTFGITImMITHEMRVIKDICNRVAVMEKGQVVETG 223
Cdd:cd03220  146 GMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVI-LVSHDPSSIKRLCDRALVLEKGKIRFDG 224
cbiO PRK13646
energy-coupling factor transporter ATPase;
2-230 1.41e-32

energy-coupling factor transporter ATPase;


Pssm-ID: 184205 [Multi-domain]  Cd Length: 286  Bit Score: 122.58  E-value: 1.41e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHKKKQ-TIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYS-DKMMRD 79
Cdd:PRK13646   3 IRFDNVSYTYQKGTPyEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTkDKYIRP 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  80 IKKDIGMIFQhfnlLNSATVF------------KNVAMPLilskkskTEIKQRVTEMLEFVGLS-DKKDQFPDELSGGQK 146
Cdd:PRK13646  83 VRKRIGMVFQ----FPESQLFedtvereiifgpKNFKMNL-------DEVKNYAHRLLMDLGFSrDVMSQSPFQMSGGQM 151
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 147 QRVAIARALVTNPKILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVK 226
Cdd:PRK13646 152 RKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPK 231

                 ....
gi 493203783 227 EVFS 230
Cdd:PRK13646 232 ELFK 235
ABCG_EPDR cd03213
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ...
2-220 1.95e-32

Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.


Pssm-ID: 213180 [Multi-domain]  Cd Length: 194  Bit Score: 119.58  E-value: 1.95e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHKK--KQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVN--HLEAASNGQVIVDGHDImnysdkMM 77
Cdd:cd03213    4 LSFRNLTVTVKSSpsKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAgrRTGLGVSGEVLINGRPL------DK 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  78 RDIKKDIGMIFQHFNLLNSATVFKNVAMPLILSKkskteikqrvtemlefvglsdkkdqfpdeLSGGQKQRVAIARALVT 157
Cdd:cd03213   78 RSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRG-----------------------------LSGGERKRVSIALELVS 128
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 493203783 158 NPKILLCDEATSALDPATTASILTLLKNVNQTfGITIMMITHEMR-VIKDICNRVAVMEKGQVV 220
Cdd:cd03213  129 NPSLLFLDEPTSGLDSSSALQVMSLLRRLADT-GRTIICSIHQPSsEIFELFDKLLLLSQGRVI 191
tauB PRK11248
taurine ABC transporter ATP-binding subunit;
20-201 4.78e-32

taurine ABC transporter ATP-binding subunit;


Pssm-ID: 183056 [Multi-domain]  Cd Length: 255  Bit Score: 120.19  E-value: 4.78e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  20 ALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGhdimnysdKMMRDIKKDIGMIFQHFNLLNSATV 99
Cdd:PRK11248  16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDG--------KPVEGPGAERGVVFQNEGLLPWRNV 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 100 FKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEATSALDPATTASI 179
Cdd:PRK11248  88 QDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQM 167
                        170       180
                 ....*....|....*....|..
gi 493203783 180 LTLLKNVNQTFGITIMMITHEM 201
Cdd:PRK11248 168 QTLLLKLWQETGKQVLLITHDI 189
CcmA COG4133
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ...
1-200 1.03e-31

ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443308 [Multi-domain]  Cd Length: 206  Bit Score: 117.97  E-value: 1.03e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKkqTIdaLKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDImnysDKMMRDI 80
Cdd:COG4133    2 MLEAENLSCRRGER--LL--FSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPI----RDAREDY 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 KKDIGMIFqHFNLLNSA-TVFKNVAMPLILSKKSKTEIkqRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNP 159
Cdd:COG4133   74 RRRLAYLG-HADGLKPElTVRENLRFWAALYGLRADRE--AIDEALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPA 150
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 493203783 160 KILLCDEATSALDPATTASILTLLKNVNQTFGItIMMITHE 200
Cdd:COG4133  151 PLWLLDEPFTALDAAGVALLAELIAAHLARGGA-VLLTTHQ 190
livG PRK11300
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
20-232 1.82e-31

leucine/isoleucine/valine transporter ATP-binding subunit; Provisional


Pssm-ID: 183080 [Multi-domain]  Cd Length: 255  Bit Score: 118.94  E-value: 1.82e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  20 ALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRdiKKDIGMIFQHFNLLNSATV 99
Cdd:PRK11300  20 AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIA--RMGVVRTFQHVRLFREMTV 97
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 100 FKN--VAMPLILS-------------KKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLC 164
Cdd:PRK11300  98 IENllVAQHQQLKtglfsgllktpafRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILML 177
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 493203783 165 DEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHP 232
Cdd:PRK11300 178 DEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRNNP 245
PRK11831 PRK11831
phospholipid ABC transporter ATP-binding protein MlaF;
1-238 1.96e-31

phospholipid ABC transporter ATP-binding protein MlaF;


Pssm-ID: 236997 [Multi-domain]  Cd Length: 269  Bit Score: 119.10  E-value: 1.96e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSksFHKKKQTIdaLKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRDI 80
Cdd:PRK11831   7 LVDMRGVS--FTRGNRCI--FDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTV 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 KKDIGMIFQHFNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEM-LEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNP 159
Cdd:PRK11831  83 RKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMkLEAVGLRGAAKLMPSELSGGMARRAALARAIALEP 162
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 493203783 160 KILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPKTTIAQ 238
Cdd:PRK11831 163 DLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANPDPRVRQ 241
cbiO PRK13647
cobalt transporter ATP-binding subunit; Provisional
6-223 2.22e-31

cobalt transporter ATP-binding subunit; Provisional


Pssm-ID: 237457 [Multi-domain]  Cd Length: 274  Bit Score: 119.07  E-value: 2.22e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   6 QVSKSFHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDImnySDKMMRDIKKDIG 85
Cdd:PRK13647   6 EVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREV---NAENEKWVRSKVG 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  86 MIFQH-FNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLC 164
Cdd:PRK13647  83 LVFQDpDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVL 162
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 493203783 165 DEATSALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQVVETG 223
Cdd:PRK13647 163 DEPMAYLDPRGQETLMEILDRLHNQ-GKTVIVATHDVDLAAEWADQVIVLKEGRVLAEG 220
cbiO PRK13642
energy-coupling factor transporter ATPase;
12-230 5.39e-31

energy-coupling factor transporter ATPase;


Pssm-ID: 184202 [Multi-domain]  Cd Length: 277  Bit Score: 118.27  E-value: 5.39e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  12 HKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDImnySDKMMRDIKKDIGMIFQH- 90
Cdd:PRK13642  14 YEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELL---TAENVWNLRRKIGMVFQNp 90
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  91 FNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEATSA 170
Cdd:PRK13642  91 DNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSM 170
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 171 LDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDiCNRVAVMEKGQVVETGTVKEVFS 230
Cdd:PRK13642 171 LDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAAS-SDRILVMKAGEIIKEAAPSELFA 229
CeuD COG4604
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ...
1-228 8.30e-31

ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];


Pssm-ID: 443654 [Multi-domain]  Cd Length: 252  Bit Score: 117.11  E-value: 8.30e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKKqtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDkmmRDI 80
Cdd:COG4604    1 MIEIKNVSKRYGGKV----VLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVATTPS---REL 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 KKDIGMIFQ--HFNL-LnsaTVFKNVAM---PLilSK-KSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIAR 153
Cdd:COG4604   74 AKRLAILRQenHINSrL---TVRELVAFgrfPY--SKgRLTAEDREIIDEAIAYLDLEDLADRYLDELSGGQRQRAFIAM 148
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 154 ALVTNPKILLCDEATSALDPATTASILTLLKNVNQTFGITIMMithemrVIKDI------CNRVAVMEKGQVVETGTVKE 227
Cdd:COG4604  149 VLAQDTDYVLLDEPLNNLDMKHSVQMMKLLRRLADELGKTVVI------VLHDInfascyADHIVAMKDGRVVAQGTPEE 222

                 .
gi 493203783 228 V 228
Cdd:COG4604  223 I 223
hmuV PRK13548
hemin importer ATP-binding subunit; Provisional
1-230 8.79e-31

hemin importer ATP-binding subunit; Provisional


Pssm-ID: 237422 [Multi-domain]  Cd Length: 258  Bit Score: 117.18  E-value: 8.79e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKkqTIdaLKDVSFTVNHNDIFGVIGYSGAGKSTLVR-LVNHLEAASnGQVIVDGHDIMNYSDkmmRD 79
Cdd:PRK13548   2 MLEARNLSVRLGGR--TL--LDDVSLTLRPGEVVAILGPNGAGKSTLLRaLSGELSPDS-GEVRLNGRPLADWSP---AE 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  80 IKKDIGMIFQHFNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALV--- 156
Cdd:PRK13548  74 LARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAqlw 153
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 157 ---TNPKILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHemrvikDI------CNRVAVMEKGQVVETGTVKE 227
Cdd:PRK13548 154 epdGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLH------DLnlaaryADRIVLLHQGRLVADGTPAE 227

                 ...
gi 493203783 228 VFS 230
Cdd:PRK13548 228 VLT 230
PRK11176 PRK11176
lipid A ABC transporter ATP-binding protein/permease MsbA;
2-231 1.22e-30

lipid A ABC transporter ATP-binding protein/permease MsbA;


Pssm-ID: 183016 [Multi-domain]  Cd Length: 582  Bit Score: 122.05  E-value: 1.22e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHKKKQTidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSdkmMRDIK 81
Cdd:PRK11176 342 IEFRNVTFTYPGKEVP--ALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYT---LASLR 416
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 KDIGMIFQHFNLLNSaTVFKNVAMPLiLSKKSKTEIKQ--RVTEMLEFVglsDKKDQFPDE--------LSGGQKQRVAI 151
Cdd:PRK11176 417 NQVALVSQNVHLFND-TIANNIAYAR-TEQYSREQIEEaaRMAYAMDFI---NKMDNGLDTvigengvlLSGGQRQRIAI 491
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 152 ARALVTNPKILLCDEATSALDP----ATTASILTLLKNVnqtfgiTIMMITHEMRVIKDiCNRVAVMEKGQVVETGTVKE 227
Cdd:PRK11176 492 ARALLRDSPILILDEATSALDTeserAIQAALDELQKNR------TSLVIAHRLSTIEK-ADEILVVEDGEIVERGTHAE 564

                 ....
gi 493203783 228 VFSH 231
Cdd:PRK11176 565 LLAQ 568
3a01208 TIGR00958
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
2-232 1.38e-30

Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]


Pssm-ID: 273363 [Multi-domain]  Cd Length: 711  Bit Score: 122.14  E-value: 1.38e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783    2 IEFRQVSKSF--HKKKQTidaLKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRd 79
Cdd:TIGR00958 479 IEFQDVSFSYpnRPDVPV---LKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLH- 554
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   80 ikKDIGMIFQHfNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFV-GLSDKKDQFPDE----LSGGQKQRVAIARA 154
Cdd:TIGR00958 555 --RQVALVGQE-PVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFImEFPNGYDTEVGEkgsqLSGGQKQRIAIARA 631
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 493203783  155 LVTNPKILLCDEATSALDpattASILTLLKNVNQTFGITIMMITHEMRVIKDiCNRVAVMEKGQVVETGTVKEVFSHP 232
Cdd:TIGR00958 632 LVRKPRVLILDEATSALD----AECEQLLQESRSRASRTVLLIAHRLSTVER-ADQILVLKKGSVVEMGTHKQLMEDQ 704
PRK09700 PRK09700
D-allose ABC transporter ATP-binding protein AlsA;
1-228 2.13e-30

D-allose ABC transporter ATP-binding protein AlsA;


Pssm-ID: 182036 [Multi-domain]  Cd Length: 510  Bit Score: 120.66  E-value: 2.13e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFhkkkQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRDI 80
Cdd:PRK09700   5 YISMAGIGKSF----GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 kkDIGMIFQHFNLLNSATVFKNVAMPLILSKK-------SKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIAR 153
Cdd:PRK09700  81 --GIGIIYQELSVIDELTVLENLYIGRHLTKKvcgvniiDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAK 158
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 493203783 154 ALVTNPKILLCDEATSALdpaTTASILTLLKNVNQ--TFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEV 228
Cdd:PRK09700 159 TLMLDAKVIIMDEPTSSL---TNKEVDYLFLIMNQlrKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV 232
ArpD COG4618
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ...
21-231 2.40e-30

ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443660 [Multi-domain]  Cd Length: 563  Bit Score: 121.01  E-value: 2.40e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  21 LKDVSFTVNHNDIFGVIGYSGAGKSTLVR-LVNHLEAASnGQVIVDGHDIMNYSDkmmRDIKKDIGMIFQHFNLLnSATV 99
Cdd:COG4618  348 LRGVSFSLEPGEVLGVIGPSGSGKSTLARlLVGVWPPTA-GSVRLDGADLSQWDR---EELGRHIGYLPQDVELF-DGTI 422
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 100 FKNVA-MPLILSkkskteikQRVTEMLEFVGLSDKKDQFPD-----------ELSGGQKQRVAIARALVTNPKILLCDEA 167
Cdd:COG4618  423 AENIArFGDADP--------EKVVAAAKLAGVHEMILRLPDgydtrigeggaRLSGGQRQRIGLARALYGDPRLVVLDEP 494
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 493203783 168 TSALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKdICNRVAVMEKGQVVETGTVKEVFSH 231
Cdd:COG4618  495 NSNLDDEGEAALAAAIRALKAR-GATVVVITHRPSLLA-AVDKLLVLRDGRVQAFGPRDEVLAR 556
YnjD COG4136
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ...
21-199 2.59e-30

ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];


Pssm-ID: 443311 [Multi-domain]  Cd Length: 211  Bit Score: 114.50  E-value: 2.59e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  21 LKDVSFTVNHNDIFGVIGYSGAGKSTLVR-LVNHLEAA--SNGQVIVDGHDImnySDKMMRdiKKDIGMIFQ------HF 91
Cdd:COG4136   17 LAPLSLTVAPGEILTLMGPSGSGKSTLLAaIAGTLSPAfsASGEVLLNGRRL---TALPAE--QRRIGILFQddllfpHL 91
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  92 NllnsatVFKNV--AMPlilSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEATS 169
Cdd:COG4136   92 S------VGENLafALP---PTIGRAQRRARVEQALEEAGLAGFADRDPATLSGGQRARVALLRALLAEPRALLLDEPFS 162
                        170       180       190
                 ....*....|....*....|....*....|
gi 493203783 170 ALDPATTASILTLLKNVNQTFGITIMMITH 199
Cdd:COG4136  163 KLDAALRAQFREFVFEQIRQRGIPALLVTH 192
PRK13536 PRK13536
nodulation factor ABC transporter ATP-binding protein NodI;
2-223 2.71e-30

nodulation factor ABC transporter ATP-binding protein NodI;


Pssm-ID: 237419 [Multi-domain]  Cd Length: 340  Bit Score: 117.62  E-value: 2.71e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHKKKqtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDImnysDKMMRDIK 81
Cdd:PRK13536  42 IDLAGVSKSYGDKA----VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPV----PARARLAR 113
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 KDIGMIFQHFNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKI 161
Cdd:PRK13536 114 ARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQL 193
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 493203783 162 LLCDEATSALDPATTASILTLLKNVnQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETG 223
Cdd:PRK13536 194 LILDEPTTGLDPHARHLIWERLRSL-LARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEG 254
PhnL COG4778
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ...
1-218 3.06e-30

Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];


Pssm-ID: 443809 [Multi-domain]  Cd Length: 229  Bit Score: 114.84  E-value: 3.06e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSF---HKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGH----DIMNYS 73
Cdd:COG4778    4 LLEVENLSKTFtlhLQGGKRLPVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILVRHDggwvDLAQAS 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  74 DKMMRDIKKD-IGMIFQHFNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLsdkkdqfPDEL--------SGG 144
Cdd:COG4778   84 PREILALRRRtIGYVSQFLRVIPRVSALDVVAEPLLERGVDREEARARARELLARLNL-------PERLwdlppatfSGG 156
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 493203783 145 QKQRVAIARALVTNPKILLCDEATSALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQ 218
Cdd:COG4778  157 EQQRVNIARGFIADPPLLLLDEPTASLDAANRAVVVELIEEAKAR-GTAIIGIFHDEEVREAVADRVVDVTPFS 229
nikD PRK10418
nickel transporter ATP-binding protein NikD; Provisional
22-242 3.07e-30

nickel transporter ATP-binding protein NikD; Provisional


Pssm-ID: 236688 [Multi-domain]  Cd Length: 254  Bit Score: 115.57  E-value: 3.07e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  22 KDVSFTVNHNDIFGVIGYSGAGKS-TLVRLVNHLEA---ASNGQVIVDGhdiMNYSDKMMRDIKkdIGMIFQH----FN- 92
Cdd:PRK10418  20 HGVSLTLQRGRVLALVGGSGSGKSlTCAAALGILPAgvrQTAGRVLLDG---KPVAPCALRGRK--IATIMQNprsaFNp 94
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  93 LLNSATVFKNVampliLSKKSKTEIKQRVTEMLEFVGLSDKK---DQFPDELSGGQKQRVAIARALVTNPKILLCDEATS 169
Cdd:PRK10418  95 LHTMHTHARET-----CLALGKPADDATLTAALEAVGLENAArvlKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTT 169
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 493203783 170 ALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPKTTIAQNFVS 242
Cdd:PRK10418 170 DLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPKHAVTRSLVS 242
PRK15093 PRK15093
peptide ABC transporter ATP-binding protein SapD;
1-234 4.10e-30

peptide ABC transporter ATP-binding protein SapD;


Pssm-ID: 185049 [Multi-domain]  Cd Length: 330  Bit Score: 117.21  E-value: 4.10e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLeAASNGQVIVDGH-----DIMNYSDK 75
Cdd:PRK15093   3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGV-TKDNWRVTADRMrfddiDLLRLSPR 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  76 MMRD-IKKDIGMIFQH-FNLLNSAtvfKNVAMPLILSKKSKTEI----------KQRVTEMLEFVGLSDKKD---QFPDE 140
Cdd:PRK15093  82 ERRKlVGHNVSMIFQEpQSCLDPS---ERVGRQLMQNIPGWTYKgrwwqrfgwrKRRAIELLHRVGIKDHKDamrSFPYE 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 141 LSGGQKQRVAIARALVTNPKILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVV 220
Cdd:PRK15093 159 LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTV 238
                        250
                 ....*....|....*..
gi 493203783 221 ETGTVKEVFS---HPKT 234
Cdd:PRK15093 239 ETAPSKELVTtphHPYT 255
PRK14258 PRK14258
phosphate ABC transporter ATP-binding protein; Provisional
10-241 8.02e-30

phosphate ABC transporter ATP-binding protein; Provisional


Pssm-ID: 184593 [Multi-domain]  Cd Length: 261  Bit Score: 114.75  E-value: 8.02e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  10 SFHKKKQTIdaLKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHL-----EAASNGQVIVDGHDIMNYSDKMMRdIKKDI 84
Cdd:PRK14258  14 SFYYDTQKI--LEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMnelesEVRVEGRVEFFNQNIYERRVNLNR-LRRQV 90
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  85 GMIFQHFNLLnSATVFKNVAMPL-ILSKKSKTEIKQRVTEMLEFVGLSD----KKDQFPDELSGGQKQRVAIARALVTNP 159
Cdd:PRK14258  91 SMVHPKPNLF-PMSVYDNVAYGVkIVGWRPKLEIDDIVESALKDADLWDeikhKIHKSALDLSGGQQQRLCIARALAVKP 169
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 160 KILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEK-----GQVVETGTVKEVFSHPKT 234
Cdd:PRK14258 170 KVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGnenriGQLVEFGLTKKIFNSPHD 249

                 ....*..
gi 493203783 235 TIAQNFV 241
Cdd:PRK14258 250 SRTREYV 256
phnK PRK11701
phosphonate C-P lyase system protein PhnK; Provisional
5-246 8.51e-30

phosphonate C-P lyase system protein PhnK; Provisional


Pssm-ID: 183280 [Multi-domain]  Cd Length: 258  Bit Score: 114.25  E-value: 8.51e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   5 RQVSKSFHKKKqtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDG-----HDIMNYSDKMMRD 79
Cdd:PRK11701  10 RGLTKLYGPRK----GCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMrdgqlRDLYALSEAERRR 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  80 I-KKDIGMIFQHF--NLLNSATVFKNVAMPLI-LSKKSKTEIKQRVTEMLEFVGL-SDKKDQFPDELSGGQKQRVAIARA 154
Cdd:PRK11701  86 LlRTEWGFVHQHPrdGLRMQVSAGGNIGERLMaVGARHYGDIRATAGDWLERVEIdAARIDDLPTTFSGGMQQRLQIARN 165
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 155 LVTNPKILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPKT 234
Cdd:PRK11701 166 LVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVLDDPQH 245
                        250
                 ....*....|..
gi 493203783 235 TIAQNFVSTVIQ 246
Cdd:PRK11701 246 PYTQLLVSSVLQ 257
PRK14271 PRK14271
phosphate ABC transporter ATP-binding protein; Provisional
21-242 1.65e-29

phosphate ABC transporter ATP-binding protein; Provisional


Pssm-ID: 172759 [Multi-domain]  Cd Length: 276  Bit Score: 114.04  E-value: 1.65e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  21 LKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNG-----QVIVDGHDIMNYSDKMmrDIKKDIGMIFQHFNLLn 95
Cdd:PRK14271  37 LDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGyrysgDVLLGGRSIFNYRDVL--EFRRRVGMLFQRPNPF- 113
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  96 SATVFKNV-----AMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEATSA 170
Cdd:PRK14271 114 PMSIMDNVlagvrAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSA 193
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 493203783 171 LDPATTASILTLLKNVNQTfgITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPKTTIAQNFVS 242
Cdd:PRK14271 194 LDPTTTEKIEEFIRSLADR--LTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSPKHAETARYVA 263
PRK13537 PRK13537
nodulation factor ABC transporter ATP-binding protein NodI;
2-231 3.38e-29

nodulation factor ABC transporter ATP-binding protein NodI;


Pssm-ID: 237420 [Multi-domain]  Cd Length: 306  Bit Score: 114.13  E-value: 3.38e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFhKKKQTIDALkdvSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSdkmmRDIK 81
Cdd:PRK13537   8 IDFRNVEKRY-GDKLVVDGL---SFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA----RHAR 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 KDIGMIFQHFNLLNSATVFKNVampLILSKK---SKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTN 158
Cdd:PRK13537  80 QRVGVVPQFDNLDPDFTVRENL---LVFGRYfglSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVND 156
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 493203783 159 PKILLCDEATSALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSH 231
Cdd:PRK13537 157 PDVLVLDEPTTGLDPQARHLMWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228
ABCC_TAP cd03248
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ...
2-219 4.17e-29

ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.


Pssm-ID: 213215 [Multi-domain]  Cd Length: 226  Bit Score: 111.79  E-value: 4.17e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHKKKQTIdALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRDIk 81
Cdd:cd03248   12 VKFQNVTFAYPTRPDTL-VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSK- 89
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 kdIGMIFQHfNLLNSATVFKNVAMPL-------ILSKKSKTEIKQRVTEMLEfvGLSDKKDQFPDELSGGQKQRVAIARA 154
Cdd:cd03248   90 --VSLVGQE-PVLFARSLQDNIAYGLqscsfecVKEAAQKAHAHSFISELAS--GYDTEVGEKGSQLSGGQKQRVAIARA 164
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 493203783 155 LVTNPKILLCDEATSALDPATTASILTLLKNVNQTFgiTIMMITHEMRVIKDiCNRVAVMEKGQV 219
Cdd:cd03248  165 LIRNPQVLILDEATSALDAESEQQVQQALYDWPERR--TVLVIAHRLSTVER-ADQILVLDGGRI 226
ABCC_NFT1 cd03369
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ...
20-224 1.72e-28

ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.


Pssm-ID: 213269 [Multi-domain]  Cd Length: 207  Bit Score: 109.42  E-value: 1.72e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  20 ALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDImnySDKMMRDIKKDIGMIFQHFNLLnSATV 99
Cdd:cd03369   23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDI---STIPLEDLRSSLTIIPQDPTLF-SGTI 98
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 100 FKNVAmplILSKKSKTEIKQ--RVTEMlefvGLSdkkdqfpdeLSGGQKQRVAIARALVTNPKILLCDEATSALDPATTA 177
Cdd:cd03369   99 RSNLD---PFDEYSDEEIYGalRVSEG----GLN---------LSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDA 162
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 493203783 178 SIltlLKNVNQTF-GITIMMITHEMRVIKDiCNRVAVMEKGQVVETGT 224
Cdd:cd03369  163 LI---QKTIREEFtNSTILTIAHRLRTIID-YDKILVMDAGEVKEYDH 206
ABC_NatA_like cd03267
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ...
2-223 1.92e-28

ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.


Pssm-ID: 213234 [Multi-domain]  Cd Length: 236  Bit Score: 110.11  E-value: 1.92e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSF-----------------HKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIV 64
Cdd:cd03267    1 IEVSNLSKSYrvyskepgligslkslfKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRV 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  65 DGhdIMNYSDKmmRDIKKDIGMIF-QHFNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSG 143
Cdd:cd03267   81 AG--LVPWKRR--KKFLRRIGVVFgQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSL 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 144 GQKQRVAIARALVTNPKILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETG 223
Cdd:cd03267  157 GQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
PRK11160 PRK11160
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
2-224 3.94e-28

cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed


Pssm-ID: 236865 [Multi-domain]  Cd Length: 574  Bit Score: 114.54  E-value: 3.94e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSksFHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRDIk 81
Cdd:PRK11160 339 LTLNNVS--FTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQA- 415
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 kdIGMIFQHFNLLnSATVFKNvampLILSKKSKTEikQRVTEMLEFVGLSDKKDQfpDE------------LSGGQKQRV 149
Cdd:PRK11160 416 --ISVVSQRVHLF-SATLRDN----LLLAAPNASD--EALIEVLQQVGLEKLLED--DKglnawlgeggrqLSGGEQRRL 484
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 493203783 150 AIARALVTNPKILLCDEATSALDPATTASILTLLKNVNQtfGITIMMITHEMRVIKDIcNRVAVMEKGQVVETGT 224
Cdd:PRK11160 485 GIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ--NKTVLMITHRLTGLEQF-DRICVMDNGQIIEQGT 556
PRK10895 PRK10895
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
21-230 6.52e-28

lipopolysaccharide ABC transporter ATP-binding protein; Provisional


Pssm-ID: 182817 [Multi-domain]  Cd Length: 241  Bit Score: 108.83  E-value: 6.52e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  21 LKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSdkMMRDIKKDIGMIFQHFNLLNSATVF 100
Cdd:PRK10895  19 VEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLP--LHARARRGIGYLPQEASIFRRLSVY 96
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 101 KNVAMPLILSKKSKTEIKQ-RVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEATSALDPATTASI 179
Cdd:PRK10895  97 DNLMAVLQIRDDLSAEQREdRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDI 176
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 493203783 180 LTLLKNVnQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFS 230
Cdd:PRK10895 177 KRIIEHL-RDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226
modC PRK11144
molybdenum ABC transporter ATP-binding protein ModC;
33-232 6.75e-27

molybdenum ABC transporter ATP-binding protein ModC;


Pssm-ID: 182993 [Multi-domain]  Cd Length: 352  Bit Score: 108.81  E-value: 6.75e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  33 IFGVigySGAGKSTLVRLVNHLEAASNGQVIVDGHdIMNYSDKmmrDI-----KKDIGMIFQHFNLLNSATVFKNV--AM 105
Cdd:PRK11144  29 IFGR---SGAGKTSLINAISGLTRPQKGRIVLNGR-VLFDAEK---GIclppeKRRIGYVFQDARLFPHYKVRGNLryGM 101
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 106 plilsKKSKTEIKQRVTEMLefvGLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEATSALDPATTASILTLLKN 185
Cdd:PRK11144 102 -----AKSMVAQFDKIVALL---GIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLER 173
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 493203783 186 VNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHP 232
Cdd:PRK11144 174 LAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220
PRK14243 PRK14243
phosphate transporter ATP-binding protein; Provisional
20-242 1.79e-26

phosphate transporter ATP-binding protein; Provisional


Pssm-ID: 184588 [Multi-domain]  Cd Length: 264  Bit Score: 105.63  E-value: 1.79e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  20 ALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLE-----AASNGQVIVDGHDImNYSDKMMRDIKKDIGMIFQHFNLL 94
Cdd:PRK14243  25 AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNdlipgFRVEGKVTFHGKNL-YAPDVDPVEVRRRIGMVFQKPNPF 103
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  95 nSATVFKNVAM-PLILSKKSktEIKQRVTEMLEFVGLSDK-KDQFPDE---LSGGQKQRVAIARALVTNPKILLCDEATS 169
Cdd:PRK14243 104 -PKSIYDNIAYgARINGYKG--DMDELVERSLRQAALWDEvKDKLKQSglsLSGGQQQRLCIARAIAVQPEVILMDEPCS 180
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 170 ALDPATTASILTLLKNVNQTFgiTIMMITHEMRVIKDICNRVAVM---------EKGQVVETGTVKEVFSHPKTTIAQNF 240
Cdd:PRK14243 181 ALDPISTLRIEELMHELKEQY--TIIIVTHNMQQAARVSDMTAFFnveltegggRYGYLVEFDRTEKIFNSPQQQATRDY 258

                 ..
gi 493203783 241 VS 242
Cdd:PRK14243 259 VS 260
galliderm_ABC TIGR03740
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 ...
2-219 1.98e-26

gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.


Pssm-ID: 163452 [Multi-domain]  Cd Length: 223  Bit Score: 104.40  E-value: 1.98e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783    2 IEFRQVSKSFhkKKQTidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDimnysdkMMRDIK 81
Cdd:TIGR03740   1 LETKNLSKRF--GKQT--AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHP-------WTRKDL 69
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   82 KDIGMIFQHFNLLNSATVFKNVAM-PLILSKKskteiKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPK 160
Cdd:TIGR03740  70 HKIGSLIESPPLYENLTARENLKVhTTLLGLP-----DSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPK 144
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 493203783  161 ILLCDEATSALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQV 219
Cdd:TIGR03740 145 LLILDEPTNGLDPIGIQELRELIRSFPEQ-GITVILSSHILSEVQQLADHIGIISEGVL 202
ABC_Carb_Monos_II cd03215
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ...
19-219 2.03e-26

Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.


Pssm-ID: 213182 [Multi-domain]  Cd Length: 182  Bit Score: 103.28  E-value: 2.03e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  19 DALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMrdIKKDIGMI---FQHFNLLN 95
Cdd:cd03215   14 GAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDA--IRAGIAYVpedRKREGLVL 91
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  96 SATVFKNVAMPLILSkkskteikqrvtemlefvglsdkkdqfpdelsGGQKQRVAIARALVTNPKILLCDEATSALDPAT 175
Cdd:cd03215   92 DLSVAENIALSSLLS--------------------------------GGNQQKVVLARWLARDPRVLILDEPTRGVDVGA 139
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 493203783 176 TASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQV 219
Cdd:cd03215  140 KAEIYRLIRELADA-GKAVLLISSELDELLGLCDRILVMYEGRI 182
ABCC_cytochrome_bd cd03247
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ...
2-223 2.36e-26

ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.


Pssm-ID: 213214 [Multi-domain]  Cd Length: 178  Bit Score: 103.16  E-value: 2.36e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHKKKQTIdaLKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMmrdiK 81
Cdd:cd03247    1 LSINNVSFSYPEQEQQV--LKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKAL----S 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 KDIGMIFQHFNLLNsATVFKNVAMPLilskkskteikqrvtemlefvglsdkkdqfpdelSGGQKQRVAIARALVTNPKI 161
Cdd:cd03247   75 SLISVLNQRPYLFD-TTLRNNLGRRF----------------------------------SGGERQRLALARILLQDAPI 119
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 493203783 162 LLCDEATSALDPATTASILTLLknVNQTFGITIMMITHEMRVIKDIcNRVAVMEKGQVVETG 223
Cdd:cd03247  120 VLLDEPTVGLDPITERQLLSLI--FEVLKDKTLIWITHHLTGIEHM-DKILFLENGKIIMQG 178
livF PRK11614
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
1-220 4.09e-26

high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;


Pssm-ID: 183231 [Multi-domain]  Cd Length: 237  Bit Score: 104.19  E-value: 4.09e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKkkqtIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNY-SDKMMRD 79
Cdd:PRK11614   5 MLSFDKVSAHYGK----IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWqTAKIMRE 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  80 ikkDIGMIFQHFNLLNSATVFKNVAMPLILSkkSKTEIKQRVTEMLE-FVGLSDKKDQFPDELSGGQKQRVAIARALVTN 158
Cdd:PRK11614  81 ---AVAIVPEGRRVFSRMTVEENLAMGGFFA--ERDQFQERIKWVYElFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQ 155
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 493203783 159 PKILLCDEATSALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQVV 220
Cdd:PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQ-GMTIFLVEQNANQALKLADRGYVLENGHVV 216
bacteriocin_ABC TIGR01193
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ...
20-228 1.30e-25

ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]


Pssm-ID: 130261 [Multi-domain]  Cd Length: 708  Bit Score: 107.52  E-value: 1.30e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   20 ALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYsdkmmrdikkDIGMIFQHFNLLN---- 95
Cdd:TIGR01193 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDI----------DRHTLRQFINYLPqepy 558
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   96 --SATVFKNvampLILSKKSKTEIkQRVTEMLEFVGLSDKKDQFP-----------DELSGGQKQRVAIARALVTNPKIL 162
Cdd:TIGR01193 559 ifSGSILEN----LLLGAKENVSQ-DEIWAACEIAEIKDDIENMPlgyqtelseegSSISGGQKQRIALARALLTDSKVL 633
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 493203783  163 LCDEATSALDPATTASILTLLKNVNQTfgiTIMMITHEMRVIKDIcNRVAVMEKGQVVETGTVKEV 228
Cdd:TIGR01193 634 ILDESTSNLDTITEKKIVNNLLNLQDK---TIIFVAHRLSVAKQS-DKIIVLDHGKIIEQGSHDEL 695
COG4559 COG4559
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
1-230 1.79e-25

ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];


Pssm-ID: 443620 [Multi-domain]  Cd Length: 258  Bit Score: 102.89  E-value: 1.79e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKkqTIdaLKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDK----- 75
Cdd:COG4559    1 MLEAENLSVRLGGR--TL--LDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPLAAWSPWelarr 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  76 --MMRdikkdigmifQHFNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIAR 153
Cdd:COG4559   77 raVLP----------QHSSLAFPFTVEEVVALGRAPHGSSAAQDRQIVREALALVGLAHLAGRSYQTLSGGEQQRVQLAR 146
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 154 ALV-------TNPKILLCDEATSALDPATTASILTLLKNVNQTfGITIMMITHemrvikDI------CNRVAVMEKGQVV 220
Cdd:COG4559  147 VLAqlwepvdGGPRWLFLDEPTSALDLAHQHAVLRLARQLARR-GGGVVAVLH------DLnlaaqyADRILLLHQGRLV 219
                        250
                 ....*....|
gi 493203783 221 ETGTVKEVFS 230
Cdd:COG4559  220 AQGTPEEVLT 229
ABCG_White cd03234
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ...
3-223 2.15e-25

White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.


Pssm-ID: 213201 [Multi-domain]  Cd Length: 226  Bit Score: 101.96  E-value: 2.15e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   3 EFRQVSKSFHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLV-----RLVNHleAASNGQVIVDGhdiMNYSDKMM 77
Cdd:cd03234    5 PWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLdaisgRVEGG--GTTSGQILFNG---QPRKPDQF 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  78 RDIkkdIGMIFQHFNLLNSATVFKNVAMPLILS---KKSKTEIKQRV-TEMLEFVGLSDKKDQFPDELSGGQKQRVAIAR 153
Cdd:cd03234   80 QKC---VAYVRQDDILLPGLTVRETLTYTAILRlprKSSDAIRKKRVeDVLLRDLALTRIGGNLVKGISGGERRRVSIAV 156
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 493203783 154 ALVTNPKILLCDEATSALDPATTASILTLLKNVNQTFGITIMMItHEMRV-IKDICNRVAVMEKGQVVETG 223
Cdd:cd03234  157 QLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTI-HQPRSdLFRLFDRILLLSSGEIVYSG 226
3a01204 TIGR00955
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ...
11-227 3.50e-25

The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]


Pssm-ID: 273361 [Multi-domain]  Cd Length: 617  Bit Score: 106.28  E-value: 3.50e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   11 FHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAAS---NGQVIVDGHDImnySDKMMRDIKkdiGMI 87
Cdd:TIGR00955  31 FCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGvkgSGSVLLNGMPI---DAKEMRAIS---AYV 104
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   88 FQHFNLLNSATVFKN------VAMPLILSKKSKteiKQRVTEMLEFVGLSDKKD---QFPDE---LSGGQKQRVAIARAL 155
Cdd:TIGR00955 105 QQDDLFIPTLTVREHlmfqahLRMPRRVTKKEK---RERVDEVLQALGLRKCANtriGVPGRvkgLSGGERKRLAFASEL 181
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 493203783  156 VTNPKILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKE 227
Cdd:TIGR00955 182 LTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQ 253
rim_protein TIGR01257
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ...
20-224 4.32e-25

retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]


Pssm-ID: 130324 [Multi-domain]  Cd Length: 2272  Bit Score: 106.64  E-value: 4.32e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783    20 ALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKmmrdIKKDIGMIFQHFNLLNSATV 99
Cdd:TIGR01257  945 AVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDA----VRQSLGMCPQHNILFHHLTV 1020
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   100 FKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEATSALDPATTASI 179
Cdd:TIGR01257 1021 AEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSI 1100
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*
gi 493203783   180 LTLLknVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGT 224
Cdd:TIGR01257 1101 WDLL--LKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGT 1143
fecE PRK11231
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
15-230 6.80e-25

Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;


Pssm-ID: 183044 [Multi-domain]  Cd Length: 255  Bit Score: 101.24  E-value: 6.80e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  15 KQTIdaLKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDkmmRDIKKDIGMIFQHFNLL 94
Cdd:PRK11231  14 TKRI--LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSS---RQLARRLALLPQHHLTP 88
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  95 NSATVFKNVAM---P-LILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEATSA 170
Cdd:PRK11231  89 EGITVRELVAYgrsPwLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTY 168
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 171 LDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFS 230
Cdd:PRK11231 169 LDINHQVELMRLMRELNTQ-GKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227
PRK10790 PRK10790
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
2-224 1.36e-24

SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;


Pssm-ID: 182733 [Multi-domain]  Cd Length: 592  Bit Score: 104.41  E-value: 1.36e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHKKKqtiDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRdik 81
Cdd:PRK10790 341 IDIDNVSFAYRDDN---LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLR--- 414
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 KDIGMIFQHFNLLnSATVFKNVAMPLILSKkskteikQRVTEMLEFVGLSDKKDQFPD-----------ELSGGQKQRVA 150
Cdd:PRK10790 415 QGVAMVQQDPVVL-ADTFLANVTLGRDISE-------EQVWQALETVQLAELARSLPDglytplgeqgnNLSVGQKQLLA 486
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 493203783 151 IARALVTNPKILLCDEATSALDPATTASILTLLKNVNQTfgITIMMITHEMRVIKDiCNRVAVMEKGQVVETGT 224
Cdd:PRK10790 487 LARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREH--TTLVVIAHRLSTIVE-ADTILVLHRGQAVEQGT 557
CydD TIGR02857
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ...
2-214 1.54e-24

thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD


Pssm-ID: 274323 [Multi-domain]  Cd Length: 529  Bit Score: 103.91  E-value: 1.54e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783    2 IEFRQVSKSFhkkKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRDik 81
Cdd:TIGR02857 322 LEFSGVSVAY---PGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRD-- 396
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   82 kDIGMIFQHFNLLNsATVFKNVAmpLILSKKSKTEIKQ--RVTEMLEFV-----GLSDKKDQFPDELSGGQKQRVAIARA 154
Cdd:TIGR02857 397 -QIAWVPQHPFLFA-GTIAENIR--LARPDASDAEIREalERAGLDEFVaalpqGLDTPIGEGGAGLSGGQAQRLALARA 472
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  155 LVTNPKILLCDEATSALDPATTASILTLLKNVNQtfGITIMMITHEmRVIKDICNRVAVM 214
Cdd:TIGR02857 473 FLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQ--GRTVLLVTHR-LALAALADRIVVL 529
cbiO PRK13638
energy-coupling factor ABC transporter ATP-binding protein;
16-230 2.18e-24

energy-coupling factor ABC transporter ATP-binding protein;


Pssm-ID: 184198 [Multi-domain]  Cd Length: 271  Bit Score: 100.08  E-value: 2.18e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  16 QTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGhDIMNYSDKMMRDIKKDIGMIFQH----- 90
Cdd:PRK13638  12 QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQG-KPLDYSKRGLLALRQQVATVFQDpeqqi 90
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  91 -FNLLNSATVF--KNVAMPlilskksKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEA 167
Cdd:PRK13638  91 fYTDIDSDIAFslRNLGVP-------EAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEP 163
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 493203783 168 TSALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFS 230
Cdd:PRK13638 164 TAGLDPAGRTQMIAIIRRIVAQ-GNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA 225
PRK10253 PRK10253
iron-enterobactin ABC transporter ATP-binding protein;
36-230 1.03e-23

iron-enterobactin ABC transporter ATP-binding protein;


Pssm-ID: 182336 [Multi-domain]  Cd Length: 265  Bit Score: 98.13  E-value: 1.03e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  36 VIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKmmrDIKKDIGMIFQHFNLLNSATVFKNVA------MPLIl 109
Cdd:PRK10253  38 IIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASK---EVARRIGLLAQNATTPGDITVQELVArgryphQPLF- 113
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 110 sKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEATSALDPATTASILTLLKNVNQT 189
Cdd:PRK10253 114 -TRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNRE 192
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 493203783 190 FGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFS 230
Cdd:PRK10253 193 KGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233
PRK10575 PRK10575
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
12-228 2.17e-23

Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;


Pssm-ID: 182561 [Multi-domain]  Cd Length: 265  Bit Score: 97.17  E-value: 2.17e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  12 HKKKQTIDALKDVSFTVNHNDIF-------------GVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMr 78
Cdd:PRK10575   5 TNHSDTTFALRNVSFRVPGRTLLhplsltfpagkvtGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAF- 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  79 diKKDIGMIFQHFNLLNSATVFKNVAM---PL--ILSKKSKTEiKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIAR 153
Cdd:PRK10575  84 --ARKVAYLPQQLPAAEGMTVRELVAIgryPWhgALGRFGAAD-REKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAM 160
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 493203783 154 ALVTNPKILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEV 228
Cdd:PRK10575 161 LVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235
CydC TIGR02868
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ...
20-199 3.45e-23

thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.


Pssm-ID: 274331 [Multi-domain]  Cd Length: 530  Bit Score: 100.13  E-value: 3.45e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   20 ALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRDIkkdIGMIFQHFNLLnSATV 99
Cdd:TIGR02868 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRR---VSVCAQDAHLF-DTTV 425
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  100 FKNvampLILSKKSKTEikQRVTEMLEFVGLSDKKDQFPD-----------ELSGGQKQRVAIARALVTNPKILLCDEAT 168
Cdd:TIGR02868 426 REN----LRLARPDATD--EELWAALERVGLADWLRALPDgldtvlgeggaRLSGGERQRLALARALLADAPILLLDEPT 499
                         170       180       190
                  ....*....|....*....|....*....|.
gi 493203783  169 SALDPATTASILTLLKNVNQtfGITIMMITH 199
Cdd:TIGR02868 500 EHLDAETADELLEDLLAALS--GRTVVLITH 528
Uup COG0488
ATPase components of ABC transporters with duplicated ATPase domains [General function ...
4-219 9.45e-23

ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];


Pssm-ID: 440254 [Multi-domain]  Cd Length: 520  Bit Score: 98.60  E-value: 9.45e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   4 FRQVSKSFHKKkqTIdaLKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDghdimnysdkmmRDIKkd 83
Cdd:COG0488    1 LENLSKSFGGR--PL--LDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIP------------KGLR-- 62
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  84 IGMIFQHFNLLNSATVFKNVAMPL-----ILSKKSKTEIK---------------------------QRVTEMLEFVGLS 131
Cdd:COG0488   63 IGYLPQEPPLDDDLTVLDTVLDGDaelraLEAELEELEAKlaepdedlerlaelqeefealggweaeARAEEILSGLGFP 142
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 132 DKKDQFP-DELSGGQKQRVAIARALVTNPKILLCDEATSALDpatTASILTL---LKNvnqtFGITIMMITHEMRVIKDI 207
Cdd:COG0488  143 EEDLDRPvSELSGGWRRRVALARALLSEPDLLLLDEPTNHLD---LESIEWLeefLKN----YPGTVLVVSHDRYFLDRV 215
                        250
                 ....*....|..
gi 493203783 208 CNRVAVMEKGQV 219
Cdd:COG0488  216 ATRILELDRGKL 227
PRK15439 PRK15439
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
1-223 1.73e-22

autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional


Pssm-ID: 185336 [Multi-domain]  Cd Length: 510  Bit Score: 97.81  E-value: 1.73e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFhkkkQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRdi 80
Cdd:PRK15439  11 LLCARSISKQY----SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAH-- 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 KKDIGMIFQHFNLLNSATVFKNVAmpLILSKKSKTeiKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPK 160
Cdd:PRK15439  85 QLGIYLVPQEPLLFPNLSVKENIL--FGLPKRQAS--MQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSR 160
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 493203783 161 ILLCDEATSALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQVVETG 223
Cdd:PRK15439 161 ILILDEPTASLTPAETERLFSRIRELLAQ-GVGIVFISHKLPEIRQLADRISVMRDGTIALSG 222
ABC2_perm_RbbA NF033858
ribosome-associated ATPase/putative transporter RbbA;
20-224 1.76e-22

ribosome-associated ATPase/putative transporter RbbA;


Pssm-ID: 468210 [Multi-domain]  Cd Length: 907  Bit Score: 98.66  E-value: 1.76e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  20 ALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQV-----IVDGHDImnysdkmmrDIKKDIGMIFQHFNLL 94
Cdd:NF033858 281 AVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAwlfgqPVDAGDI---------ATRRRVGYMSQAFSLY 351
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  95 NSATVFKNvampLILSKK----SKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEATSA 170
Cdd:NF033858 352 GELTVRQN----LELHARlfhlPAAEIAARVAEMLERFDLADVADALPDSLPLGIRQRLSLAVAVIHKPELLILDEPTSG 427
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 493203783 171 LDPATTASILTLLKNVNQTFGITIMMITHEM----RvikdiCNRVAVMEKGQVVETGT 224
Cdd:NF033858 428 VDPVARDMFWRLLIELSREDGVTIFISTHFMneaeR-----CDRISLMHAGRVLASDT 480
Uup COG0488
ATPase components of ABC transporters with duplicated ATPase domains [General function ...
1-221 1.92e-22

ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];


Pssm-ID: 440254 [Multi-domain]  Cd Length: 520  Bit Score: 97.83  E-value: 1.92e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKkqTIdaLKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVdGHDImnysdkmmrdi 80
Cdd:COG0488  315 VLELEGLSKSYGDK--TL--LDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTVKL-GETV----------- 378
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 kkDIGMIFQHFNLLN-SATVFKNVAmpLILSKKSKTEIKQRVTEMLeFVGlsDKKDQFPDELSGGQKQRVAIARALVTNP 159
Cdd:COG0488  379 --KIGYFDQHQEELDpDKTVLDELR--DGAPGGTEQEVRGYLGRFL-FSG--DDAFKPVGVLSGGEKARLALAKLLLSPP 451
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 493203783 160 KILLCDEATSALDPATtasiLTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVE 221
Cdd:COG0488  452 NVLLLDEPTNHLDIET----LEALEEALDDFPGTVLLVSHDRYFLDRVATRILEFEDGGVRE 509
btuD PRK09536
corrinoid ABC transporter ATPase; Reviewed
1-251 2.54e-22

corrinoid ABC transporter ATPase; Reviewed


Pssm-ID: 236554 [Multi-domain]  Cd Length: 402  Bit Score: 96.83  E-value: 2.54e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFhkKKQTIdaLKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSdkmMRDI 80
Cdd:PRK09536   3 MIDVSDLSVEF--GDTTV--LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALS---ARAA 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 KKDIGMIFQHFNLLNSATVFKNVAM---PLILSKKSKTEIKQR-VTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALV 156
Cdd:PRK09536  76 SRRVASVPQDTSLSFEFDVRQVVEMgrtPHRSRFDTWTETDRAaVERAMERTGVAQFADRPVTSLSGGERQRVLLARALA 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 157 TNPKILLCDEATSALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPktTI 236
Cdd:PRK09536 156 QATPVLLLDEPTASLDINHQVRTLELVRRLVDD-GKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTAD--TL 232
                        250
                 ....*....|....*.
gi 493203783 237 AQNF-VSTVIQTEPST 251
Cdd:PRK09536 233 RAAFdARTAVGTDPAT 248
PRK10247 PRK10247
putative ABC transporter ATP-binding protein YbbL; Provisional
21-205 3.20e-22

putative ABC transporter ATP-binding protein YbbL; Provisional


Pssm-ID: 182331 [Multi-domain]  Cd Length: 225  Bit Score: 93.24  E-value: 3.20e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  21 LKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRdikKDIGMIFQHFNLLNSaTVF 100
Cdd:PRK10247  23 LNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYR---QQVSYCAQTPTLFGD-TVY 98
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 101 KNVAMPLILSKKSKTEikQRVTEMLEFVGLSDKKDQFP-DELSGGQKQRVAIARALVTNPKILLCDEATSALDPATTASI 179
Cdd:PRK10247  99 DNLIFPWQIRNQQPDP--AIFLDDLERFALPDTILTKNiAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNV 176
                        170       180
                 ....*....|....*....|....*.
gi 493203783 180 LTLLKNVNQTFGITIMMITHEMRVIK 205
Cdd:PRK10247 177 NEIIHRYVREQNIAVLWVTHDKDEIN 202
araG PRK11288
L-arabinose ABC transporter ATP-binding protein AraG;
3-222 5.12e-22

L-arabinose ABC transporter ATP-binding protein AraG;


Pssm-ID: 183077 [Multi-domain]  Cd Length: 501  Bit Score: 96.52  E-value: 5.12e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   3 EFRQVSKSFHKKKqtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDiMNYSDkmMRD-IK 81
Cdd:PRK11288   6 SFDGIGKTFPGVK----ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQE-MRFAS--TTAaLA 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 KDIGMIFQHFNLLNSATVFKNV---AMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTN 158
Cdd:PRK11288  79 AGVAIIYQELHLVPEMTVAENLylgQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARN 158
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 493203783 159 PKILLCDEATSALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQVVET 222
Cdd:PRK11288 159 ARVIAFDEPTSSLSAREIEQLFRVIRELRAE-GRVILYVSHRMEEIFALCDAITVFKDGRYVAT 221
MglA COG1129
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
5-220 6.71e-22

ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];


Pssm-ID: 440745 [Multi-domain]  Cd Length: 497  Bit Score: 96.24  E-value: 6.71e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   5 RQVSKSFHKKKQTIDA-------------LKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGH--DI 69
Cdd:COG1129  239 RELEDLFPKRAAAPGEvvleveglsvggvVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGKpvRI 318
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  70 MNYSDKmmrdIKKDIGM---------IFQHFnllnsaTVFKNVAMPLI--LSKK---SKTEIKQRVTEMLEFVGL-SDKK 134
Cdd:COG1129  319 RSPRDA----IRAGIAYvpedrkgegLVLDL------SIRENITLASLdrLSRGgllDRRRERALAEEYIKRLRIkTPSP 388
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 135 DQFPDELSGGQKQRVAIARALVTNPKILLCDEATSALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVM 214
Cdd:COG1129  389 EQPVGNLSGGNQQKVVLAKWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE-GKAVIVISSELPELLGLSDRILVM 467

                 ....*.
gi 493203783 215 EKGQVV 220
Cdd:COG1129  468 REGRIV 473
PLN03130 PLN03130
ABC transporter C family member; Provisional
2-230 1.13e-20

ABC transporter C family member; Provisional


Pssm-ID: 215595 [Multi-domain]  Cd Length: 1622  Bit Score: 93.26  E-value: 1.13e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783    2 IEFRQVSKSFhkKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKS----TLVRLVnHLEaasNGQVIVDGHDIMNYSdkmM 77
Cdd:PLN03130 1238 IKFEDVVLRY--RPELPPVLHGLSFEISPSEKVGIVGRTGAGKSsmlnALFRIV-ELE---RGRILIDGCDISKFG---L 1308
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   78 RDIKKDIGMIFQHfNLLNSATVFKNVAmPLilSKKSKTEIkqrvTEMLEFVGLSD--KKDQFP---------DELSGGQK 146
Cdd:PLN03130 1309 MDLRKVLGIIPQA-PVLFSGTVRFNLD-PF--NEHNDADL----WESLERAHLKDviRRNSLGldaevseagENFSVGQR 1380
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  147 QRVAIARALVTNPKILLCDEATSALDPATTASIltlLKNVNQTF-GITIMMITHEMRVIKDiCNRVAVMEKGQVVETGTV 225
Cdd:PLN03130 1381 QLLSLARALLRRSKILVLDEATAAVDVRTDALI---QKTIREEFkSCTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTP 1456

                  ....*
gi 493203783  226 KEVFS 230
Cdd:PLN03130 1457 ENLLS 1461
MRP_assoc_pro TIGR00957
multi drug resistance-associated protein (MRP); This model describes multi drug ...
2-230 5.61e-20

multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]


Pssm-ID: 188098 [Multi-domain]  Cd Length: 1522  Bit Score: 91.16  E-value: 5.61e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783     2 IEFRQVSKSFhkkKQTID-ALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGhdiMNYSDKMMRDI 80
Cdd:TIGR00957 1285 VEFRNYCLRY---REDLDlVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDG---LNIAKIGLHDL 1358
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783    81 KKDIGMIFQHfNLLNSATVFKNVAmPLilSKKSKTEI--KQRVTEMLEFV-GLSDKKDQFPDE----LSGGQKQRVAIAR 153
Cdd:TIGR00957 1359 RFKITIIPQD-PVLFSGSLRMNLD-PF--SQYSDEEVwwALELAHLKTFVsALPDKLDHECAEggenLSVGQRQLVCLAR 1434
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 493203783   154 ALVTNPKILLCDEATSALDPATTASILTLLKnvNQTFGITIMMITHEMRVIKDIcNRVAVMEKGQVVETGTVKEVFS 230
Cdd:TIGR00957 1435 ALLRKTKILVLDEATAAVDLETDNLIQSTIR--TQFEDCTVLTIAHRLNTIMDY-TRVIVLDKGEVAEFGAPSNLLQ 1508
xylG TIGR02633
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ...
1-222 6.11e-20

D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]


Pssm-ID: 131681 [Multi-domain]  Cd Length: 500  Bit Score: 90.27  E-value: 6.11e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783    1 MIEFRQVSKSFHKKKqtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVN--HLEAASNGQVIVDGHDIMNYSdkmMR 78
Cdd:TIGR02633   1 LLEMKGIVKTFGGVK----ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSgvYPHGTWDGEIYWSGSPLKASN---IR 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   79 DI-KKDIGMIFQHFNLLNSATVFKNVAMPLILSKKSK----TEIKQRVTEMLEFVGLSDKKDQFP-DELSGGQKQRVAIA 152
Cdd:TIGR02633  74 DTeRAGIVIIHQELTLVPELSVAENIFLGNEITLPGGrmayNAMYLRAKNLLRELQLDADNVTRPvGDYGGGQQQLVEIA 153
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  153 RALVTNPKILLCDEATSALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQVVET 222
Cdd:TIGR02633 154 KALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAH-GVACVYISHKLNEVKAVCDTICVIRDGQHVAT 222
ABCG_PDR_domain1 cd03233
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ...
4-220 1.33e-19

First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213200 [Multi-domain]  Cd Length: 202  Bit Score: 85.39  E-value: 1.33e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   4 FRQVSKSFHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVR-LVNHLE--AASNGQVIVDGHDImnysdkmmrdi 80
Cdd:cd03233    6 WRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKaLANRTEgnVSVEGDIHYNGIPY----------- 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 kKDIGMIFQHFNLLNSAtvfKNVAMPLILskkskteikqrVTEMLEFVgLSDKKDQFPDELSGGQKQRVAIARALVTNPK 160
Cdd:cd03233   75 -KEFAEKYPGEIIYVSE---EDVHFPTLT-----------VRETLDFA-LRCKGNEFVRGISGGERKRVSIAEALVSRAS 138
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 493203783 161 ILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRV-IKDICNRVAVMEKGQVV 220
Cdd:cd03233  139 VLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDeIYDLFDKVLVLYEGRQI 199
MK0520 COG2401
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ...
3-221 1.39e-19

ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];


Pssm-ID: 441957 [Multi-domain]  Cd Length: 222  Bit Score: 85.78  E-value: 1.39e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   3 EFRQVSKSFHKK--KQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVnhLEAASNGQV--IVDGHDIMNYSDKmmr 78
Cdd:COG2401   26 RVAIVLEAFGVElrVVERYVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLL--AGALKGTPVagCVDVPDNQFGREA--- 100
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  79 dikkdigmifqhfnllnsatvfknvamPLILSKKSKTEIKQrVTEMLEFVGLSD-----KKdqfPDELSGGQKQRVAIAR 153
Cdd:COG2401  101 ---------------------------SLIDAIGRKGDFKD-AVELLNAVGLSDavlwlRR---FKELSTGQKFRFRLAL 149
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 154 ALVTNPKILLCDEATSALDPaTTASILTL-LKNVNQTFGITIMMITHEMRVIKDIC-NRVAVMEKGQVVE 221
Cdd:COG2401  150 LLAERPKLLVIDEFCSHLDR-QTAKRVARnLQKLARRAGITLVVATHHYDVIDDLQpDLLIFVGYGGVPE 218
PRK13549 PRK13549
xylose transporter ATP-binding subunit; Provisional
1-222 3.95e-19

xylose transporter ATP-binding subunit; Provisional


Pssm-ID: 184134 [Multi-domain]  Cd Length: 506  Bit Score: 88.06  E-value: 3.95e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKKqtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVN--HLEAASNGQVIVDGHDIMNYSdkmMR 78
Cdd:PRK13549   5 LLEMKNITKTFGGVK----ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSgvYPHGTYEGEIIFEGEELQASN---IR 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  79 DI-KKDIGMIFQHFNLLNSATVFKNVAMPLILSKKSKT---EIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARA 154
Cdd:PRK13549  78 DTeRAGIAIIHQELALVKELSVLENIFLGNEITPGGIMdydAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKA 157
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 493203783 155 LVTNPKILLCDEATSALDPATTASILTLLKNVnQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVET 222
Cdd:PRK13549 158 LNKQARLLILDEPTASLTESETAVLLDIIRDL-KAHGIACIYISHKLNEVKAISDTICVIRDGRHIGT 224
PLN03232 PLN03232
ABC transporter C family member; Provisional
21-243 4.14e-19

ABC transporter C family member; Provisional


Pssm-ID: 215640 [Multi-domain]  Cd Length: 1495  Bit Score: 88.49  E-value: 4.14e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   21 LKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSdkmMRDIKKDIGMIFQHfNLLNSATVF 100
Cdd:PLN03232 1252 LHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFG---LTDLRRVLSIIPQS-PVLFSGTVR 1327
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  101 KNVAmPLilSKKSKTEIkqrvTEMLEFVGLSDKKDQFP-----------DELSGGQKQRVAIARALVTNPKILLCDEATS 169
Cdd:PLN03232 1328 FNID-PF--SEHNDADL----WEALERAHIKDVIDRNPfgldaevseggENFSVGQRQLLSLARALLRRSKILVLDEATA 1400
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 493203783  170 ALDPATTASIltlLKNVNQTF-GITIMMITHEMRVIKDiCNRVAVMEKGQVVETGTVKEVFSHPKTTIAQNFVST 243
Cdd:PLN03232 1401 SVDVRTDSLI---QRTIREEFkSCTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHST 1471
PRK11174 PRK11174
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
24-227 4.26e-19

cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed


Pssm-ID: 236870 [Multi-domain]  Cd Length: 588  Bit Score: 87.98  E-value: 4.26e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  24 VSFTVNHNDIFGVIGYSGAGKSTLVrlvNHLE--AASNGQVIVDGHDImnySDKMMRDIKKDIGMIFQHFNLLNsATVFK 101
Cdd:PRK11174 369 LNFTLPAGQRIALVGPSGAGKTSLL---NALLgfLPYQGSLKINGIEL---RELDPESWRKHLSWVGQNPQLPH-GTLRD 441
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 102 NVAmpliLSKKSKTEikQRVTEMLEFVGLSDKKDQFPD-----------ELSGGQKQRVAIARALVTNPKILLCDEATSA 170
Cdd:PRK11174 442 NVL----LGNPDASD--EQLQQALENAWVSEFLPLLPQgldtpigdqaaGLSVGQAQRLALARALLQPCQLLLLDEPTAS 515
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 493203783 171 LDPATTASILTLLKNVNQtfGITIMMITHEMRVIKDiCNRVAVMEKGQVVETGTVKE 227
Cdd:PRK11174 516 LDAHSEQLVMQALNAASR--RQTTLMVTHQLEDLAQ-WDQIWVMQDGQIVQQGDYAE 569
PRK10789 PRK10789
SmdA family multidrug ABC transporter permease/ATP-binding protein;
9-232 1.18e-18

SmdA family multidrug ABC transporter permease/ATP-binding protein;


Pssm-ID: 182732 [Multi-domain]  Cd Length: 569  Bit Score: 86.69  E-value: 1.18e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   9 KSFHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDImnySDKMMRDIKKDIGMIF 88
Cdd:PRK10789 319 RQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPL---TKLQLDSWRSRLAVVS 395
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  89 QHfNLLNSATVFKNVAmpliLSKKSKTeiKQRVTEMLEFVGLSDKKDQFPD-----------ELSGGQKQRVAIARALVT 157
Cdd:PRK10789 396 QT-PFLFSDTVANNIA----LGRPDAT--QQEIEHVARLASVHDDILRLPQgydtevgergvMLSGGQKQRISIARALLL 468
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 493203783 158 NPKILLCDEATSALDPATTASILTLLKNVNQtfGITIMMITHEMRVIKDiCNRVAVMEKGQVVETGTVKEVFSHP 232
Cdd:PRK10789 469 NAEILILDDALSAVDGRTEHQILHNLRQWGE--GRTVIISAHRLSALTE-ASEILVMQHGHIAQRGNHDQLAQQS 540
tagH PRK13545
teichoic acids export protein ATP-binding subunit; Provisional
2-231 1.26e-18

teichoic acids export protein ATP-binding subunit; Provisional


Pssm-ID: 184130 [Multi-domain]  Cd Length: 549  Bit Score: 86.48  E-value: 1.26e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHKKKQTIDALKD----------------VSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVivd 65
Cdd:PRK13545   5 VKFEHVTKKYKMYNKPFDKLKDlffrskdgeyhyalnnISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTV--- 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  66 ghdimnysdkmmrDIKKDIGMIFQHFNLLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQ 145
Cdd:PRK13545  82 -------------DIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGM 148
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 146 KQRVAIARALVTNPKILLCDEATSALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTV 225
Cdd:PRK13545 149 KSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQ-GKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDI 227

                 ....*.
gi 493203783 226 KEVFSH 231
Cdd:PRK13545 228 KEVVDH 233
PRK15056 PRK15056
manganese/iron ABC transporter ATP-binding protein;
20-230 1.32e-18

manganese/iron ABC transporter ATP-binding protein;


Pssm-ID: 185016 [Multi-domain]  Cd Length: 272  Bit Score: 84.16  E-value: 1.32e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  20 ALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDImnysDKMMRdiKKDIGMIFQH------FNL 93
Cdd:PRK15056  22 ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPT----RQALQ--KNLVAYVPQSeevdwsFPV 95
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  94 LNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEATSALDP 173
Cdd:PRK15056  96 LVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDV 175
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 493203783 174 ATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNrVAVMEKGQVVETGTVKEVFS 230
Cdd:PRK15056 176 KTEARIISLLRELRDE-GKTMLVSTHNLGSVTEFCD-YTVMVKGTVLASGPTETTFT 230
ABCC_MRP_domain1 cd03250
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ...
2-218 2.30e-18

ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.


Pssm-ID: 213217 [Multi-domain]  Cd Length: 204  Bit Score: 82.13  E-value: 2.30e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHKKKQTID-ALKDVSFTVNHNDIFGVIGYSGAGKSTLVR-LVNHLEAaSNGQVIVDGHdimnysdkmmrd 79
Cdd:cd03250    1 ISVEDASFTWDSGEQETSfTLKDINLEVPKGELVAIVGPVGSGKSSLLSaLLGELEK-LSGSVSVPGS------------ 67
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  80 ikkdIGMIFQHFNLLNsATVFKNVAMplilskkSKTEIKQRVTEMLEFVGLSDKKDQFPD-------E----LSGGQKQR 148
Cdd:cd03250   68 ----IAYVSQEPWIQN-GTIRENILF-------GKPFDEERYEKVIKACALEPDLEILPDgdlteigEkginLSGGQKQR 135
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 493203783 149 VAIARALVTNPKILLCDEATSALDPATTASI-----LTLLKNvnqtfGITIMMITHEMRVIKDiCNRVAVMEKGQ 218
Cdd:cd03250  136 ISLARAVYSDADIYLLDDPLSAVDAHVGRHIfenciLGLLLN-----NKTRILVTHQLQLLPH-ADQIVVLDNGR 204
ABCD_peroxisomal_ALDP cd03223
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ...
21-199 2.57e-18

ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).


Pssm-ID: 213190 [Multi-domain]  Cd Length: 166  Bit Score: 81.05  E-value: 2.57e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  21 LKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDimnysdkmmrdikkdiGMIFqhfnllnsatvf 100
Cdd:cd03223   17 LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGE----------------DLLF------------ 68
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 101 knvaMPlilskkskteikQRvtemlEFVGLSDKKDQ--FP--DELSGGQKQRVAIARALVTNPKILLCDEATSALDPATT 176
Cdd:cd03223   69 ----LP------------QR-----PYLPLGTLREQliYPwdDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESE 127
                        170       180
                 ....*....|....*....|...
gi 493203783 177 ASILTLLKnvnqTFGITIMMITH 199
Cdd:cd03223  128 DRLYQLLK----ELGITVISVGH 146
znuC PRK09544
high-affinity zinc transporter ATPase; Reviewed
1-233 2.63e-18

high-affinity zinc transporter ATPase; Reviewed


Pssm-ID: 181939 [Multi-domain]  Cd Length: 251  Bit Score: 82.85  E-value: 2.63e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKKqtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGqvivdghdimnysdKMMRDI 80
Cdd:PRK09544   4 LVSLENVSVSFGQRR----VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEG--------------VIKRNG 65
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 KKDIGMIFQHFNLlnSATVFKNVAMPLILSKKSKteiKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPK 160
Cdd:PRK09544  66 KLRIGYVPQKLYL--DTTLPLTVNRFLRLRPGTK---KEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQ 140
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 493203783 161 ILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMeKGQVVETGTVKEVFSHPK 233
Cdd:PRK09544 141 LLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCL-NHHICCSGTPEVVSLHPE 212
YddA COG4178
ABC-type uncharacterized transport system, permease and ATPase components [General function ...
21-199 4.65e-18

ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];


Pssm-ID: 443337 [Multi-domain]  Cd Length: 571  Bit Score: 84.86  E-value: 4.65e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  21 LKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIV-DGHDIM-----NYsdkmmrdikkdigmifqhfnlL 94
Cdd:COG4178  379 LEDLSLSLKPGERLLITGPSGSGKSTLLRAIAGLWPYGSGRIARpAGARVLflpqrPY---------------------L 437
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  95 NSATVFKNVAMPLILSKKSKTEIKqrvtEMLEFVGLSDKKDQFPDE------LSGGQKQRVAIARALVTNPKILLCDEAT 168
Cdd:COG4178  438 PLGTLREALLYPATAEAFSDAELR----EALEAVGLGHLAERLDEEadwdqvLSLGEQQRLAFARLLLHKPDWLFLDEAT 513
                        170       180       190
                 ....*....|....*....|....*....|.
gi 493203783 169 SALDPATTASILTLLKnvNQTFGITIMMITH 199
Cdd:COG4178  514 SALDEENEAALYQLLR--EELPGTTVISVGH 542
ABCF_EF-3 cd03221
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ...
2-218 8.27e-18

ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.


Pssm-ID: 213188 [Multi-domain]  Cd Length: 144  Bit Score: 79.03  E-value: 8.27e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHKKKqtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGhdimnysdkmmrdik 81
Cdd:cd03221    1 IELENLSKTYGGKL----LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGS--------------- 61
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 kdiGMIFQHFnllnsatvfknvamplilskkskteikqrvtemlefvglsdkkdqfpDELSGGQKQRVAIARALVTNPKI 161
Cdd:cd03221   62 ---TVKIGYF-----------------------------------------------EQLSGGEKMRLALAKLLLENPNL 91
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 493203783 162 LLCDEATSALDPATtasiLTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQ 218
Cdd:cd03221   92 LLLDEPTNHLDLES----IEALEEALKEYPGTVILVSHDRYFLDQVATKIIELEDGK 144
PRK15439 PRK15439
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
22-219 9.40e-18

autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional


Pssm-ID: 185336 [Multi-domain]  Cd Length: 510  Bit Score: 83.95  E-value: 9.40e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  22 KDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKmmrdIKKDIGMIF-----QHFNLLNS 96
Cdd:PRK15439 280 RNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTA----QRLARGLVYlpedrQSSGLYLD 355
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  97 ATVFKNVA------MPLILSKKSKTEIKQRVTEMLEfVGLSDKkDQFPDELSGGQKQRVAIARALVTNPKILLCDEATSA 170
Cdd:PRK15439 356 APLAWNVCalthnrRGFWIKPARENAVLERYRRALN-IKFNHA-EQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRG 433
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 493203783 171 LDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQV 219
Cdd:PRK15439 434 VDVSARNDIYQLIRSIAAQ-NVAVLFISSDLEEIEQMADRVLVMHQGEI 481
CFTR_protein TIGR01271
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ...
21-264 1.02e-17

cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]


Pssm-ID: 273530 [Multi-domain]  Cd Length: 1490  Bit Score: 84.58  E-value: 1.02e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783    21 LKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLeAASNGQVIVDGhdiMNYSDKMMRDIKKDIGMIFQHFNLLnSATVF 100
Cdd:TIGR01271 1235 LQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRL-LSTEGEIQIDG---VSWNSVTLQTWRKAFGVIPQKVFIF-SGTFR 1309
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   101 KNVAmPLilSKKSKTEIkQRVTEMlefVGLSDKKDQFPDEL-----------SGGQKQRVAIARALVTNPKILLCDEATS 169
Cdd:TIGR01271 1310 KNLD-PY--EQWSDEEI-WKVAEE---VGLKSVIEQFPDKLdfvlvdggyvlSNGHKQLMCLARSILSKAKILLLDEPSA 1382
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   170 ALDPATTASILTLLKnvnQTFG-ITIMMITHEMRVIKDiCNRVAVMEKGQV----------VETGTVKEVFSHP---KTT 235
Cdd:TIGR01271 1383 HLDPVTLQIIRKTLK---QSFSnCTVILSEHRVEALLE-CQQFLVIEGSSVkqydsiqkllNETSLFKQAMSAAdrlKLF 1458
                          250       260
                   ....*....|....*....|....*....
gi 493203783   236 IAQNFVSTVIQTEPSTSLIRRLNDEQVGD 264
Cdd:TIGR01271 1459 PLHRRNSSKRKPQPKITALREEAEEEVQN 1487
PTZ00265 PTZ00265
multidrug resistance protein (mdr1); Provisional
2-239 2.03e-17

multidrug resistance protein (mdr1); Provisional


Pssm-ID: 240339 [Multi-domain]  Cd Length: 1466  Bit Score: 83.54  E-value: 2.03e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783    2 IEFRQVSKSFHKKKQtIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIV-DGHDIMN--------- 71
Cdd:PTZ00265  383 IQFKNVRFHYDTRKD-VEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIInDSHNLKDinlkwwrsk 461
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   72 ----------YSDKMMRDIK------KDIGMIFQHF-----------NLLNSATVFKNVAMPLILSKKSKTEIKQ----- 119
Cdd:PTZ00265  462 igvvsqdpllFSNSIKNNIKyslyslKDLEALSNYYnedgndsqenkNKRNSCRAKCAGDLNDMSNTTDSNELIEmrkny 541
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  120 RVTEMLEFVGLSDKK------DQFPDE-----------LSGGQKQRVAIARALVTNPKILLCDEATSALDPATTASILTL 182
Cdd:PTZ00265  542 QTIKDSEVVDVSKKVlihdfvSALPDKyetlvgsnaskLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKT 621
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 493203783  183 LKNVNQTFGITIMMITHEMRVIKdICNRVAVMEKGQVVETGTVKEVFSHPKTTIAQN 239
Cdd:PTZ00265  622 INNLKGNENRITIIIAHRLSTIR-YANTIFVLSNRERGSTVDVDIIGEDPTKDNKEN 677
PRK10762 PRK10762
D-ribose transporter ATP binding protein; Provisional
21-219 2.87e-17

D-ribose transporter ATP binding protein; Provisional


Pssm-ID: 236755 [Multi-domain]  Cd Length: 501  Bit Score: 82.36  E-value: 2.87e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  21 LKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDK---------MMRDIKKD---IGMif 88
Cdd:PRK10762 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQdglangivyISEDRKRDglvLGM-- 345
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  89 qhfnllnsaTVFKNVAMPLI--LSKKS-KTEIKQRVTEMLEFVGLSDKK----DQFPDELSGGQKQRVAIARALVTNPKI 161
Cdd:PRK10762 346 ---------SVKENMSLTALryFSRAGgSLKHADEQQAVSDFIRLFNIKtpsmEQAIGLLSGGNQQKVAIARGLMTRPKV 416
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 493203783 162 LLCDEATSALDPATTASILTLlknVNQtF---GITIMMITHEMRVIKDICNRVAVMEKGQV 219
Cdd:PRK10762 417 LILDEPTRGVDVGAKKEIYQL---INQ-FkaeGLSIILVSSEMPEVLGMSDRILVMHEGRI 473
PRK13546 PRK13546
teichoic acids export ABC transporter ATP-binding subunit TagH;
13-231 1.92e-16

teichoic acids export ABC transporter ATP-binding subunit TagH;


Pssm-ID: 184131 [Multi-domain]  Cd Length: 264  Bit Score: 77.93  E-value: 1.92e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  13 KKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGhdimnysdkmmrdikkDIGMIFQHFN 92
Cdd:PRK13546  32 HKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG----------------EVSVIAISAG 95
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  93 LLNSATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEATSALD 172
Cdd:PRK13546  96 LSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGD 175
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 493203783 173 PATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSH 231
Cdd:PRK13546 176 QTFAQKCLDKIYEFKEQ-NKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPK 233
ABCC_CFTR2 cd03289
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ...
21-230 3.33e-16

ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.


Pssm-ID: 213256 [Multi-domain]  Cd Length: 275  Bit Score: 77.59  E-value: 3.33e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  21 LKDVSFTVNHNDIFGVIGYSGAGKSTL----VRLVNhleaaSNGQVIVDGhdiMNYSDKMMRDIKKDIGMIFQHFNLLnS 96
Cdd:cd03289   20 LENISFSISPGQRVGLLGRTGSGKSTLlsafLRLLN-----TEGDIQIDG---VSWNSVPLQKWRKAFGVIPQKVFIF-S 90
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  97 ATVFKNvampLILSKKSKTEIKQRVTEMlefVGLSDKKDQFPDEL-----------SGGQKQRVAIARALVTNPKILLCD 165
Cdd:cd03289   91 GTFRKN----LDPYGKWSDEEIWKVAEE---VGLKSVIEQFPGQLdfvlvdggcvlSHGHKQLMCLARSVLSKAKILLLD 163
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 493203783 166 EATSALDPATTASILTLLKnvnQTF-GITIMMITHEMRVIKDiCNRVAVMEKGQVVETGTVKEVFS 230
Cdd:cd03289  164 EPSAHLDPITYQVIRKTLK---QAFaDCTVILSEHRIEAMLE-CQRFLVIEENKVRQYDSIQKLLN 225
rim_protein TIGR01257
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ...
28-258 3.61e-16

retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]


Pssm-ID: 130324 [Multi-domain]  Cd Length: 2272  Bit Score: 80.06  E-value: 3.61e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783    28 VNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNysdkMMRDIKKDIGMIFQHFNLLNSATVFKNVAMPL 107
Cdd:TIGR01257 1962 VRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT----NISDVHQNMGYCPQFDAIDDLLTGREHLYLYA 2037
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   108 ILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEATSALDPATTASILTLLKNVN 187
Cdd:TIGR01257 2038 RLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSII 2117
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 493203783   188 QTfGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKevfsHPKTTIAQNFVSTVIQTEPSTSLIRRLN 258
Cdd:TIGR01257 2118 RE-GRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQ----HLKSKFGDGYIVTMKIKSPKDDLLPDLN 2183
PRK09700 PRK09700
D-allose ABC transporter ATP-binding protein AlsA;
22-221 3.64e-16

D-allose ABC transporter ATP-binding protein AlsA;


Pssm-ID: 182036 [Multi-domain]  Cd Length: 510  Bit Score: 79.06  E-value: 3.64e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  22 KDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDkmMRDIKKDIGMI---------FQHFN 92
Cdd:PRK09700 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSP--LDAVKKGMAYItesrrdngfFPNFS 357
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  93 LLNSATVFKNV-------AMPLILSKKS-KTEIKQRVTEMLEFVGLsdkkDQFPDELSGGQKQRVAIARALVTNPKILLC 164
Cdd:PRK09700 358 IAQNMAISRSLkdggykgAMGLFHEVDEqRTAENQRELLALKCHSV----NQNITELSGGNQQKVLISKWLCCCPEVIIF 433
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 493203783 165 DEATSALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQVVE 221
Cdd:PRK09700 434 DEPTRGIDVGAKAEIYKVMRQLADD-GKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489
ABC_FeS_Assembly cd03217
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ...
21-228 5.35e-16

ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.


Pssm-ID: 213184 [Multi-domain]  Cd Length: 200  Bit Score: 75.26  E-value: 5.35e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  21 LKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEA--ASNGQVIVDGHDIMNYSdkMMRDIKKDIGMIFQHfnllnsat 98
Cdd:cd03217   16 LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKyeVTEGEILFKGEDITDLP--PEERARLGIFLAFQY-------- 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  99 vfkNVAMPLIlskkskteikqRVTEMLEFVGLSdkkdqfpdeLSGGQKQRVAIARALVTNPKILLCDEATSALDpattAS 178
Cdd:cd03217   86 ---PPEIPGV-----------KNADFLRYVNEG---------FSGGEKKRNEILQLLLLEPDLAILDEPDSGLD----ID 138
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 493203783 179 ILTLLKNVNQTF---GITIMMITHEMRVIKDI-CNRVAVMEKGQVVETGTVKEV 228
Cdd:cd03217  139 ALRLVAEVINKLreeGKSVLIITHYQRLLDYIkPDRVHVLYDGRIVKSGDKELA 192
PRK13539 PRK13539
cytochrome c biogenesis protein CcmA; Provisional
21-183 6.00e-16

cytochrome c biogenesis protein CcmA; Provisional


Pssm-ID: 237421 [Multi-domain]  Cd Length: 207  Bit Score: 75.30  E-value: 6.00e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  21 LKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDI--------MNYsdkmmrdikkdIGmifqHFN 92
Cdd:PRK13539  18 FSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIddpdvaeaCHY-----------LG----HRN 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  93 LLNSA-TVFKNvampLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEATSAL 171
Cdd:PRK13539  83 AMKPAlTVAEN----LEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAAL 158
                        170
                 ....*....|..
gi 493203783 172 DPATTASILTLL 183
Cdd:PRK13539 159 DAAAVALFAELI 170
GguA NF040905
sugar ABC transporter ATP-binding protein;
1-222 1.13e-15

sugar ABC transporter ATP-binding protein;


Pssm-ID: 468840 [Multi-domain]  Cd Length: 500  Bit Score: 77.52  E-value: 1.13e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKKqtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVN--HLEAASNGQVIVDGhDIMNYSDkmMR 78
Cdd:NF040905   1 ILEMRGITKTFPGVK----ALDDVNLSVREGEIHALCGENGAGKSTLMKVLSgvYPHGSYEGEILFDG-EVCRFKD--IR 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  79 DI-KKDIGMIFQHFNLLNSATVFKNVAMPLILSKK---SKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARA 154
Cdd:NF040905  74 DSeALGIVIIHQELALIPYLSIAENIFLGNERAKRgviDWNETNRRARELLAKVGLDESPDTLVTDIGVGKQQLVEIAKA 153
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 493203783 155 LVTNPKILLCDEATSALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQVVET 222
Cdd:NF040905 154 LSKDVKLLILDEPTAALNEEDSAALLDLLLELKAQ-GITSIIISHKLNEIRRVADSITVLRDGRTIET 220
NupO COG3845
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ...
19-228 1.90e-15

ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];


Pssm-ID: 443055 [Multi-domain]  Cd Length: 504  Bit Score: 76.99  E-value: 1.90e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  19 DALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRDIkkdiGMIF-----QHFNL 93
Cdd:COG3845  272 PALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITGLSPRERRRL----GVAYipedrLGRGL 347
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  94 LNSATVFKNVAM------PL----ILSKKsktEIKQRVTEMLEfvglsdkkdQF----PDE------LSGGQKQRVAIAR 153
Cdd:COG3845  348 VPDMSVAENLILgryrrpPFsrggFLDRK---AIRAFAEELIE---------EFdvrtPGPdtparsLSGGNQQKVILAR 415
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 493203783 154 ALVTNPKILLCDEATSALDPATTASILTLLKNV-NQtfGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEV 228
Cdd:COG3845  416 ELSRDPKLLIAAQPTRGLDVGAIEFIHQRLLELrDA--GAAVLLISEDLDEILALSDRIAVMYEGRIVGEVPAAEA 489
PRK10762 PRK10762
D-ribose transporter ATP binding protein; Provisional
1-227 1.99e-15

D-ribose transporter ATP binding protein; Provisional


Pssm-ID: 236755 [Multi-domain]  Cd Length: 501  Bit Score: 76.97  E-value: 1.99e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKKqtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRDi 80
Cdd:PRK10762   4 LLQLKGIDKAFPGVK----ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQE- 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 kKDIGMIFQHFNLLNSATVFKNV--------AMPLILSKKskteIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIA 152
Cdd:PRK10762  79 -AGIGIIHQELNLIPQLTIAENIflgrefvnRFGRIDWKK----MYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIA 153
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 493203783 153 RALVTNPKILLCDEATSALDPATTASILTLLKNVnQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKE 227
Cdd:PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIREL-KSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVAD 227
xylG TIGR02633
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ...
1-219 2.60e-15

D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]


Pssm-ID: 131681 [Multi-domain]  Cd Length: 500  Bit Score: 76.40  E-value: 2.60e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783    1 MIEFRQVSkSFHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVR-LVNHLEAASNGQVIVDGH--DIMNYSDKmm 77
Cdd:TIGR02633 257 ILEARNLT-CWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQaLFGAYPGKFEGNVFINGKpvDIRNPAQA-- 333
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   78 rdIKKDIGMI---FQHFNLLNSATVFKNVAMPLILSKKSKTEIKQRVTE--MLEFVGLSDKKDQFPD----ELSGGQKQR 148
Cdd:TIGR02633 334 --IRAGIAMVpedRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELqiIGSAIQRLKVKTASPFlpigRLSGGNQQK 411
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 493203783  149 VAIARALVTNPKILLCDEATSALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQV 219
Cdd:TIGR02633 412 AVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE-GVAIIVVSSELAEVLGLSDRVLVIGEGKL 481
PTZ00265 PTZ00265
multidrug resistance protein (mdr1); Provisional
58-205 3.25e-15

multidrug resistance protein (mdr1); Provisional


Pssm-ID: 240339 [Multi-domain]  Cd Length: 1466  Bit Score: 76.99  E-value: 3.25e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   58 SNGQVIVDGHDIMNYSdkmMRDIKKDIGMIFQHFNLLNsATVFKNVAMPLILSKKSKTEIKQRVTEMLEFV-GLSDKKDQ 136
Cdd:PTZ00265 1275 NSGKILLDGVDICDYN---LKDLRNLFSIVSQEPMLFN-MSIYENIKFGKEDATREDVKRACKFAAIDEFIeSLPNKYDT 1350
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 493203783  137 ----FPDELSGGQKQRVAIARALVTNPKILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIK 205
Cdd:PTZ00265 1351 nvgpYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIK 1423
BtuD COG4138
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ...
21-230 3.25e-15

ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];


Pssm-ID: 443313 [Multi-domain]  Cd Length: 248  Bit Score: 74.11  E-value: 3.25e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  21 LKDVSFTVNHNDIFGVIGYSGAGKSTLvrlvnhLEAAS-----NGQVIVDGHDIMNYSdkmMRDIKKDIGMIFQHfnlln 95
Cdd:COG4138   12 LGPISAQVNAGELIHLIGPNGAGKSTL------LARMAgllpgQGEILLNGRPLSDWS---AAELARHRAYLSQQ----- 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  96 SATVFknvAMP----LIL---SKKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALV-----TNP--KI 161
Cdd:COG4138   78 QSPPF---AMPvfqyLALhqpAGASSEAVEQLLAQLAEALGLEDKLSRPLTQLSGGEWQRVRLAAVLLqvwptINPegQL 154
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 493203783 162 LLCDEATSALDPATTASILTLLKNVNQTfGITIMMITHemrvikDI------CNRVAVMEKGQVVETGTVKEVFS 230
Cdd:COG4138  155 LLLDEPMNSLDVAQQAALDRLLRELCQQ-GITVVMSSH------DLnhtlrhADRVWLLKQGKLVASGETAEVMT 222
PRK10982 PRK10982
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
7-227 9.32e-15

galactose/methyl galaxtoside transporter ATP-binding protein; Provisional


Pssm-ID: 182880 [Multi-domain]  Cd Length: 491  Bit Score: 74.77  E-value: 9.32e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   7 VSKSFHKKKqtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKmmRDIKKDIGM 86
Cdd:PRK10982   4 ISKSFPGVK----ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSK--EALENGISM 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  87 IFQHFNLLNSATVFKNVAM-------PLILSKKSKTEIKQRVTEMLEFVglsDKKDQFPDeLSGGQKQRVAIARALVTNP 159
Cdd:PRK10982  78 VHQELNLVLQRSVMDNMWLgryptkgMFVDQDKMYRDTKAIFDELDIDI---DPRAKVAT-LSVSQMQMIEIAKAFSYNA 153
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 493203783 160 KILLCDEATSALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKE 227
Cdd:PRK10982 154 KIVIMDEPTSSLTEKEVNHLFTIIRKLKER-GCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAG 220
ccmA TIGR01189
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ...
24-199 9.44e-15

heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]


Pssm-ID: 273491 [Multi-domain]  Cd Length: 198  Bit Score: 72.01  E-value: 9.44e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   24 VSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRDIKKdIGmifqHFNLLNSA-TVFKN 102
Cdd:TIGR01189  19 LSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAEQRDEPHENILY-LG----HLPGLKPElSALEN 93
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  103 VA-MPLILSKKSKTeikqrVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEATSALDPATTASILT 181
Cdd:TIGR01189  94 LHfWAAIHGGAQRT-----IEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRRPLWILDEPTTALDKAGVALLAG 168
                         170
                  ....*....|....*...
gi 493203783  182 LLKNVNQTFGITIMMiTH 199
Cdd:TIGR01189 169 LLRAHLARGGIVLLT-TH 185
PRK10522 PRK10522
multidrug transporter membrane component/ATP-binding component; Provisional
2-231 1.56e-14

multidrug transporter membrane component/ATP-binding component; Provisional


Pssm-ID: 236707 [Multi-domain]  Cd Length: 547  Bit Score: 74.24  E-value: 1.56e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSksFHKKKQTIdALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDImnySDKMMRDIK 81
Cdd:PRK10522 323 LELRNVT--FAYQDNGF-SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPV---TAEQPEDYR 396
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 KDIGMIFQHFNLLNSatvfknvamplILSKKSKTEIKQRVTEMLEFVGLSDKKD----QFPD-ELSGGQKQRVAIARALV 156
Cdd:PRK10522 397 KLFSAVFTDFHLFDQ-----------LLGPEGKPANPALVEKWLERLKMAHKLEledgRISNlKLSKGQKKRLALLLALA 465
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 493203783 157 TNPKILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIkDICNRVAVMEKGQVVE-TGTVKEVFSH 231
Cdd:PRK10522 466 EERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYF-IHADRLLEMRNGQLSElTGEERDAASR 540
PRK13549 PRK13549
xylose transporter ATP-binding subunit; Provisional
12-219 1.52e-13

xylose transporter ATP-binding subunit; Provisional


Pssm-ID: 184134 [Multi-domain]  Cd Length: 506  Bit Score: 71.11  E-value: 1.52e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  12 HKKKqtidaLKDVSFTVNHNDIFGVIGYSGAGKSTLVR-LVNHLEAASNGQVIVDGH--DIMNYSDKmmrdIKKDIGMI- 87
Cdd:PRK13549 274 HIKR-----VDDVSFSLRRGEILGIAGLVGAGRTELVQcLFGAYPGRWEGEIFIDGKpvKIRNPQQA----IAQGIAMVp 344
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  88 --FQHFNLLNSATVFKNVAMPLI--LSKKSKTEIKQRVTEMLEFVGLSDKKDQFPD----ELSGGQKQRVAIARALVTNP 159
Cdd:PRK13549 345 edRKRDGIVPVMGVGKNITLAALdrFTGGSRIDDAAELKTILESIQRLKVKTASPElaiaRLSGGNQQKAVLAKCLLLNP 424
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 160 KILLCDEATSALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQV 219
Cdd:PRK13549 425 KILILDEPTRGIDVGAKYEIYKLINQLVQQ-GVAIIVISSELPEVLGLSDRVLVMHEGKL 483
PRK03695 PRK03695
vitamin B12-transporter ATPase; Provisional
24-228 1.56e-13

vitamin B12-transporter ATPase; Provisional


Pssm-ID: 235150 [Multi-domain]  Cd Length: 248  Bit Score: 69.19  E-value: 1.56e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  24 VSFTVNHNDIFGVIGYSGAGKSTLV-RLVNHLEAAsnGQVIVDGHDIMNYSdkmMRDIKKDIGMIFQHfnllnSATVFkn 102
Cdd:PRK03695  15 LSAEVRAGEILHLVGPNGAGKSTLLaRMAGLLPGS--GSIQFAGQPLEAWS---AAELARHRAYLSQQ-----QTPPF-- 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 103 vAMP----LILSKKSKTEIKQ---RVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARAL-----VTNP--KILLCDEAT 168
Cdd:PRK03695  83 -AMPvfqyLTLHQPDKTRTEAvasALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVlqvwpDINPagQLLLLDEPM 161
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 169 SALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEV 228
Cdd:PRK03695 162 NSLDVAQQAALDRLLSELCQQ-GIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEV 220
ABC_ABC_ChvD TIGR03719
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ...
2-200 2.27e-13

ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.


Pssm-ID: 274744 [Multi-domain]  Cd Length: 552  Bit Score: 70.73  E-value: 2.27e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783    2 IEFRQVSKSFhKKKQTIDalkDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKmMRDik 81
Cdd:TIGR03719 323 IEAENLTKAF-GDKLLID---DLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEIGETVKLAYVDQ-SRD-- 395
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   82 kdigmifqhfNLLNSATVFKNVAMPLILSKKSKTEIKQRVtemleFVGLSDKK--DQ--FPDELSGGQKQRVAIARALVT 157
Cdd:TIGR03719 396 ----------ALDPNKTVWEEISGGLDIIKLGKREIPSRA-----YVGRFNFKgsDQqkKVGQLSGGERNRVHLAKTLKS 460
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 493203783  158 NPKILLCDEATSALDPATtasiLTLLKNVNQTFGITIMMITHE 200
Cdd:TIGR03719 461 GGNVLLLDEPTNDLDVET----LRALEEALLNFAGCAVVISHD 499
ABC_CcmA_heme_exporter cd03231
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ...
24-199 2.86e-13

Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.


Pssm-ID: 213198 [Multi-domain]  Cd Length: 201  Bit Score: 67.52  E-value: 2.86e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  24 VSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRDIkkdigMIFQHFNLLNSA-TVFKN 102
Cdd:cd03231   19 LSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGL-----LYLGHAPGIKTTlSVLEN 93
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 103 VAMPLILSKKSKTEikqrvtEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEATSALDPATTASILTL 182
Cdd:cd03231   94 LRFWHADHSDEQVE------EALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEA 167
                        170
                 ....*....|....*..
gi 493203783 183 LKNVNQTFGItIMMITH 199
Cdd:cd03231  168 MAGHCARGGM-VVLTTH 183
PTZ00243 PTZ00243
ABC transporter; Provisional
21-228 3.11e-13

ABC transporter; Provisional


Pssm-ID: 240327 [Multi-domain]  Cd Length: 1560  Bit Score: 70.96  E-value: 3.11e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   21 LKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSdkmMRDIKKDIGMIFQHfNLLNSATVF 100
Cdd:PTZ00243 1326 LRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYG---LRELRRQFSMIPQD-PVLFDGTVR 1401
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  101 KNVAmPliLSKKSKTEikqrVTEMLEFVGL-------SDKKDQFPDE----LSGGQKQRVAIARALVT-NPKILLCDEAT 168
Cdd:PTZ00243 1402 QNVD-P--FLEASSAE----VWAALELVGLrervaseSEGIDSRVLEggsnYSVGQRQLMCMARALLKkGSGFILMDEAT 1474
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 493203783  169 SALDPATTASILTllkNVNQTF-GITIMMITHEMRVIKDiCNRVAVMEKGQVVETGTVKEV 228
Cdd:PTZ00243 1475 ANIDPALDRQIQA---TVMSAFsAYTVITIAHRLHTVAQ-YDKIIVMDHGAVAEMGSPREL 1531
3a01205 TIGR00956
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
4-255 6.83e-13

Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]


Pssm-ID: 273362 [Multi-domain]  Cd Length: 1394  Bit Score: 69.75  E-value: 6.83e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783     4 FRQVSKSFHKKKQTIdaLKDVSFTVNHNDIFGVIGYSGAGKSTLVRLV----NHLEAASNGQVIVDGHDimnySDKMMRD 79
Cdd:TIGR00956   62 FRKLKKFRDTKTFDI--LKPMDGLIKPGELTVVLGRPGSGCSTLLKTIasntDGFHIGVEGVITYDGIT----PEEIKKH 135
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783    80 IKKDIGMIFQ---HFNLLNSATVFKNVAM-------PLILSKKskTEIKQRVTEMLEFVGLSDKKD-----QFPDELSGG 144
Cdd:TIGR00956  136 YRGDVVYNAEtdvHFPHLTVGETLDFAARcktpqnrPDGVSRE--EYAKHIADVYMATYGLSHTRNtkvgnDFVRGVSGG 213
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   145 QKQRVAIARALVTNPKILLCDEATSALDPATTASILTLLKN----VNQTFGITIMMITHEmrvIKDICNRVAVMEKGQVV 220
Cdd:TIGR00956  214 ERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTsaniLDTTPLVAIYQCSQD---AYELFDKVIVLYEGYQI 290
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....
gi 493203783   221 ETGT---VKEVFS------HPKTTIAqNFVSTViqTEPSTSLIR 255
Cdd:TIGR00956  291 YFGPadkAKQYFEkmgfkcPDRQTTA-DFLTSL--TSPAERQIK 331
PRK11147 PRK11147
ABC transporter ATPase component; Reviewed
21-220 1.15e-12

ABC transporter ATPase component; Reviewed


Pssm-ID: 236861 [Multi-domain]  Cd Length: 635  Bit Score: 68.82  E-value: 1.15e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  21 LKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNysdKMMRDIKKDIgmifqhfnllnSATVF 100
Cdd:PRK11147  19 LDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVA---RLQQDPPRNV-----------EGTVY 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 101 KNVA----------------MPLILSKKSKTEIKQ------------------RVTEMLEFVGLSdkkdqfPD----ELS 142
Cdd:PRK11147  85 DFVAegieeqaeylkryhdiSHLVETDPSEKNLNElaklqeqldhhnlwqlenRINEVLAQLGLD------PDaalsSLS 158
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 493203783 143 GGQKQRVAIARALVTNPKILLCDEATSALDPATTASILTLLKNvnqtFGITIMMITHEMRVIKDICNRVAVMEKGQVV 220
Cdd:PRK11147 159 GGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKT----FQGSIIFISHDRSFIRNMATRIVDLDRGKLV 232
ABC_ABC_ChvD TIGR03719
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ...
7-200 6.67e-12

ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.


Pssm-ID: 274744 [Multi-domain]  Cd Length: 552  Bit Score: 66.11  E-value: 6.67e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783    7 VSKSFHKKKQTidaLKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVivdghdimnysdKMMRDIKkdIGM 86
Cdd:TIGR03719  10 VSKVVPPKKEI---LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKDFNGEA------------RPQPGIK--VGY 72
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   87 IFQHFNLLNSATVFKNVAMPLilskkskTEIKQRVTEMLE-FVGLSDKKDQF---------------------------- 137
Cdd:TIGR03719  73 LPQEPQLDPTKTVRENVEEGV-------AEIKDALDRFNEiSAKYAEPDADFdklaaeqaelqeiidaadawdldsqlei 145
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 493203783  138 -------PD------ELSGGQKQRVAIARALVTNPKILLCDEATSALDPATTAsiltLLKNVNQTFGITIMMITHE 200
Cdd:TIGR03719 146 amdalrcPPwdadvtKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVA----WLERHLQEYPGTVVAVTHD 217
NIL smart00930
This domain is found at the C-terminus of ABC transporter proteins involved in D-methionine ...
264-340 3.01e-11

This domain is found at the C-terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins; This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family.


Pssm-ID: 197998 [Multi-domain]  Cd Length: 76  Bit Score: 58.68  E-value: 3.01e-11
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 493203783   264 DFKDYKIFVEETQVTQPIINDLIQICGREVKILFSSMSEIQGNTVCYMWLRFNIDQQFDDTAInQYFKEKNIQFEEV 340
Cdd:smart00930   1 DGRLVRLTFTGESADEPLISQLAREFGVDVNILHGNIERIQGGPFGSLVVELTGDEEDIEAAL-AYLREQGVEVEVL 76
ABC_RNaseL_inhibitor_domain2 cd03237
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ...
27-215 4.49e-11

The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.


Pssm-ID: 213204 [Multi-domain]  Cd Length: 246  Bit Score: 62.04  E-value: 4.49e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  27 TVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDImNYSDKMmrdIKKDIGMIFQHFnlLNSATvfknvamp 106
Cdd:cd03237   21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTV-SYKPQY---IKADYEGTVRDL--LSSIT-------- 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 107 lilskKSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEATSALDP----ATTASILTL 182
Cdd:cd03237   87 -----KDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVeqrlMASKVIRRF 161
                        170       180       190
                 ....*....|....*....|....*....|...
gi 493203783 183 LKNVNQtfgiTIMMITHEMRVIKDICNRVAVME 215
Cdd:cd03237  162 AENNEK----TAFVVEHDIIMIDYLADRLIVFE 190
40850658_otr NF000106
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
113-228 6.71e-11

oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;


Pssm-ID: 411078 [Multi-domain]  Cd Length: 351  Bit Score: 62.83  E-value: 6.71e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 113 SKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEATSALDPATTASILTLLKNVNQTfGI 192
Cdd:NF000106 117 SRKDARARADELLERFSLTEAAGRAAAKYSGGMRRRLDLAASMIGRPAVLYLDEPTTGLDPRTRNEVWDEVRSMVRD-GA 195
                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 493203783 193 TIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEV 228
Cdd:NF000106 196 TVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDEL 231
ycf16 CHL00131
sulfate ABC transporter protein; Validated
9-225 7.51e-11

sulfate ABC transporter protein; Validated


Pssm-ID: 214372 [Multi-domain]  Cd Length: 252  Bit Score: 61.58  E-value: 7.51e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   9 KSFHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAAS--NGQVIVDGHDImNYSDKMMRDiKKDIGM 86
Cdd:CHL00131  11 KNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKilEGDILFKGESI-LDLEPEERA-HLGIFL 88
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  87 IFQH-----------FNLL--NSATVFKNvampliLSKKSKTEIKQRVTEMLEFVGLSDK------KDQFpdelSGGQKQ 147
Cdd:CHL00131  89 AFQYpieipgvsnadFLRLayNSKRKFQG------LPELDPLEFLEIINEKLKLVGMDPSflsrnvNEGF----SGGEKK 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 148 RVAIARALVTNPKILLCDEATSALDP---ATTASILTLLKNVNQtfgiTIMMITHEMRVIKDIC-NRVAVMEKGQVVETG 223
Cdd:CHL00131 159 RNEILQMALLDSELAILDETDSGLDIdalKIIAEGINKLMTSEN----SIILITHYQRLLDYIKpDYVHVMQNGKIIKTG 234

                 ..
gi 493203783 224 TV 225
Cdd:CHL00131 235 DA 236
araG PRK11288
L-arabinose ABC transporter ATP-binding protein AraG;
24-220 7.69e-11

L-arabinose ABC transporter ATP-binding protein AraG;


Pssm-ID: 183077 [Multi-domain]  Cd Length: 501  Bit Score: 63.01  E-value: 7.69e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  24 VSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDK------MM---RDIKKDiGMIFQHfnll 94
Cdd:PRK11288 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRdairagIMlcpEDRKAE-GIIPVH---- 346
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  95 nsaTVFKNVAMP---------LILSKKSKTEIKQRVTEMLEFVGLSdkKDQFPDELSGGQKQRVAIARALVTNPKILLCD 165
Cdd:PRK11288 347 ---SVADNINISarrhhlragCLINNRWEAENADRFIRSLNIKTPS--REQLIMNLSGGNQQKAILGRWLSEDMKVILLD 421
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 493203783 166 EATSALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQVV 220
Cdd:PRK11288 422 EPTRGIDVGAKHEIYNVIYELAAQ-GVAVLFVSSDLPEVLGVADRIVVMREGRIA 475
ABCC_SUR2 cd03288
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The ...
21-243 1.07e-10

ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.


Pssm-ID: 213255 [Multi-domain]  Cd Length: 257  Bit Score: 61.08  E-value: 1.07e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  21 LKDVSFTVNHNDIFGVIGYSGAGKSTL----VRLVNHLEaasnGQVIVDGHDImnySDKMMRDIKKDIGMIFQHfNLLNS 96
Cdd:cd03288   37 LKHVKAYIKPGQKVGICGRTGSGKSSLslafFRMVDIFD----GKIVIDGIDI---SKLPLHTLRSRLSIILQD-PILFS 108
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  97 ATVFKNVamplilsKKSKTEIKQRVTEMLEFVGLSDKKDQFP-----------DELSGGQKQRVAIARALVTNPKILLCD 165
Cdd:cd03288  109 GSIRFNL-------DPECKCTDDRLWEALEIAQLKNMVKSLPggldavvteggENFSVGQRQLFCLARAFVRKSSILIMD 181
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 493203783 166 EATSALDPATTAsilTLLKNVNQTFG-ITIMMITHEMRVIKDiCNRVAVMEKGQVVETGTVKEVFSHpKTTIAQNFVST 243
Cdd:cd03288  182 EATASIDMATEN---ILQKVVMTAFAdRTVVTIAHRVSTILD-ADLVLVLSRGILVECDTPENLLAQ-EDGVFASLVRT 255
PRK11819 PRK11819
putative ABC transporter ATP-binding protein; Reviewed
2-199 1.14e-10

putative ABC transporter ATP-binding protein; Reviewed


Pssm-ID: 236992 [Multi-domain]  Cd Length: 556  Bit Score: 62.44  E-value: 1.14e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFhKKKQTIDalkDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVdGHDI-MNYSDKmMRDi 80
Cdd:PRK11819 325 IEAENLSKSF-GDRLLID---DLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI-GETVkLAYVDQ-SRD- 397
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 kkdigmifqhfNLLNSATVFKNVAMPLILSKKSKTEIKQRVtemleFVGLSDKK--DQ--FPDELSGGQKQRVAIARALV 156
Cdd:PRK11819 398 -----------ALDPNKTVWEEISGGLDIIKVGNREIPSRA-----YVGRFNFKggDQqkKVGVLSGGERNRLHLAKTLK 461
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 493203783 157 TNPKILLCDEATSALDPATtasiLTLLKNVNQTFGITIMMITH 199
Cdd:PRK11819 462 QGGNVLLLDEPTNDLDVET----LRALEEALLEFPGCAVVISH 500
PLN03211 PLN03211
ABC transporter G-25; Provisional
32-200 2.60e-10

ABC transporter G-25; Provisional


Pssm-ID: 215634 [Multi-domain]  Cd Length: 659  Bit Score: 61.43  E-value: 2.60e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  32 DIFGVIGYSGAGKSTLVR-LVNHLEAAS-NGQVIVDGHdimnysdKMMRDIKKDIGMIFQHFNLLNSATVFKNVA----- 104
Cdd:PLN03211  95 EILAVLGPSGSGKSTLLNaLAGRIQGNNfTGTILANNR-------KPTKQILKRTGFVTQDDILYPHLTVRETLVfcsll 167
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 105 -MPLILSKKSKTEIKQRVTEMLefvGLSDKKD-----QFPDELSGGQKQRVAIARALVTNPKILLCDEATSALDPATTAS 178
Cdd:PLN03211 168 rLPKSLTKQEKILVAESVISEL---GLTKCENtiignSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYR 244
                        170       180
                 ....*....|....*....|..
gi 493203783 179 ILTLLKNVNQTfGITIMMITHE 200
Cdd:PLN03211 245 LVLTLGSLAQK-GKTIVTSMHQ 265
3a01205 TIGR00956
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
14-236 3.05e-10

Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]


Pssm-ID: 273362 [Multi-domain]  Cd Length: 1394  Bit Score: 61.66  E-value: 3.05e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783    14 KKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVrlvNHLEAASNGQVIVDGHDIMNYSdKMMRDIKKDIGMIFQHFNL 93
Cdd:TIGR00956  772 KKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLL---NVLAERVTTGVITGGDRLVNGR-PLDSSFQRSIGYVQQQDLH 847
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783    94 LNSATVFKNVA------MPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFPDE-LSGGQKQRVAIARALVTNPKILL-CD 165
Cdd:TIGR00956  848 LPTSTVRESLRfsaylrQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEgLNVEQRKRLTIGVELVAKPKLLLfLD 927
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 493203783   166 EATSALDPATTASILTLLKNVNQTfGITIMMITHE-MRVIKDICNRVAVMEKG-QVVETGTVKEvfsHPKTTI 236
Cdd:TIGR00956  928 EPTSGLDSQTAWSICKLMRKLADH-GQAILCTIHQpSAILFEEFDRLLLLQKGgQTVYFGDLGE---NSHTII 996
PRK10938 PRK10938
putative molybdenum transport ATP-binding protein ModF; Provisional
2-173 4.93e-10

putative molybdenum transport ATP-binding protein ModF; Provisional


Pssm-ID: 182852 [Multi-domain]  Cd Length: 490  Bit Score: 60.41  E-value: 4.93e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHKKKqtidALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLV--NHLEAASNgQVIVDGHdiMNYSDKMMRD 79
Cdd:PRK10938 261 IVLNNGVVSYNDRP----ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLItgDHPQGYSN-DLTLFGR--RRGSGETIWD 333
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  80 IKKDIGMIFQ--HFNLLNSATVfKNVamplILS---------KKSKTEIKQRVTEMLEFVGLSDKKDQFP-DELSGGQKQ 147
Cdd:PRK10938 334 IKKHIGYVSSslHLDYRVSTSV-RNV----ILSgffdsigiyQAVSDRQQKLAQQWLDILGIDKRTADAPfHSLSWGQQR 408
                        170       180
                 ....*....|....*....|....*.
gi 493203783 148 RVAIARALVTNPKILLCDEATSALDP 173
Cdd:PRK10938 409 LALIVRALVKHPTLLILDEPLQGLDP 434
PRK10982 PRK10982
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
20-222 5.22e-10

galactose/methyl galaxtoside transporter ATP-binding protein; Provisional


Pssm-ID: 182880 [Multi-domain]  Cd Length: 491  Bit Score: 60.51  E-value: 5.22e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  20 ALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDG--------HDIMNYSDKMMRDIKKDIGmIFQH- 90
Cdd:PRK10982 263 SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGkkinnhnaNEAINHGFALVTEERRSTG-IYAYl 341
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  91 ---FN-LLNSATVFKNvAMPLILSKKSKTEIKQRVTEMLefVGLSDKKDQFpDELSGGQKQRVAIARALVTNPKILLCDE 166
Cdd:PRK10982 342 digFNsLISNIRNYKN-KVGLLDNSRMKSDTQWVIDSMR--VKTPGHRTQI-GSLSGGNQQKVIIGRWLLTQPEILMLDE 417
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 493203783 167 ATSALDPATTASILTLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQV---VET 222
Cdd:PRK10982 418 PTRGIDVGAKFEIYQLIAELAKK-DKGIIIISSEMPELLGITDRILVMSNGLVagiVDT 475
ABC2_perm_RbbA NF033858
ribosome-associated ATPase/putative transporter RbbA;
20-173 1.31e-09

ribosome-associated ATPase/putative transporter RbbA;


Pssm-ID: 468210 [Multi-domain]  Cd Length: 907  Bit Score: 59.37  E-value: 1.31e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  20 ALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDImnySDKMMRD-IKKDIGMIFQHF--NLLNS 96
Cdd:NF033858  16 ALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRVEVLGGDM---ADARHRRaVCPRIAYMPQGLgkNLYPT 92
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  97 ATVFKNVAMPLILSKKSKTEIKQRVTEMLEFVGLsdkkDQFPD----ELSGGQKQRVAIARALVTNPKILLCDEATSALD 172
Cdd:NF033858  93 LSVFENLDFFGRLFGQDAAERRRRIDELLRATGL----APFADrpagKLSGGMKQKLGLCCALIHDPDLLILDEPTTGVD 168

                 .
gi 493203783 173 P 173
Cdd:NF033858 169 P 169
PRK11819 PRK11819
putative ABC transporter ATP-binding protein; Reviewed
7-199 2.12e-09

putative ABC transporter ATP-binding protein; Reviewed


Pssm-ID: 236992 [Multi-domain]  Cd Length: 556  Bit Score: 58.59  E-value: 2.12e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   7 VSKSFHKKKQTidaLKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVdghdimnysdkmMRDIKkdIGM 86
Cdd:PRK11819  12 VSKVVPPKKQI---LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARP------------APGIK--VGY 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  87 IFQHFNLLNSATVFKNVAMPLilskKSKTEIKQRVTE-MLEFVGLSDKKDQFPDE------------------------- 140
Cdd:PRK11819  75 LPQEPQLDPEKTVRENVEEGV----AEVKAALDRFNEiYAAYAEPDADFDALAAEqgelqeiidaadawdldsqleiamd 150
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 493203783 141 -------------LSGGQKQRVAIARALVTNPKILLCDEATSALDPATTAsiltLLKNVNQTFGITIMMITH 199
Cdd:PRK11819 151 alrcppwdakvtkLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVA----WLEQFLHDYPGTVVAVTH 218
PRK13538 PRK13538
cytochrome c biogenesis heme-transporting ATPase CcmA;
23-204 3.00e-09

cytochrome c biogenesis heme-transporting ATPase CcmA;


Pssm-ID: 184125 [Multi-domain]  Cd Length: 204  Bit Score: 55.97  E-value: 3.00e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  23 DVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRDIkkdigMIFQHFNLLNSA-TVFK 101
Cdd:PRK13538  19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDL-----LYLGHQPGIKTElTALE 93
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 102 NVAMPLILSKKSKTEikqRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEATSALDPATTASILT 181
Cdd:PRK13538  94 NLRFYQRLHGPGDDE---ALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEA 170
                        170       180
                 ....*....|....*....|...
gi 493203783 182 LLKNVNQTFGITIMMITHEMRVI 204
Cdd:PRK13538 171 LLAQHAEQGGMVILTTHQDLPVA 193
AAA smart00382
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ...
30-206 6.85e-09

ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.


Pssm-ID: 214640 [Multi-domain]  Cd Length: 148  Bit Score: 53.92  E-value: 6.85e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783    30 HNDIFGVIGYSGAGKSTLVR-LVNHLEAASNGQVIVDGHDIMNYSDKMMRDIKKDIGMIfqhfnllnsatvfknvampli 108
Cdd:smart00382   1 PGEVILIVGPPGSGKTTLARaLARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKA--------------------- 59
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   109 lskkskteikqrvtemlefvglsdkkdqfpdELSGGQKQRVAIARALVTNPKILLCDEATSALDPATTASIL-----TLL 183
Cdd:smart00382  60 -------------------------------SGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLlleelRLL 108
                          170       180
                   ....*....|....*....|...
gi 493203783   184 KNVNQTFGITIMMITHEMRVIKD 206
Cdd:smart00382 109 LLLKSEKNLTVILTTNDEKDLGP 131
ABC_RNaseL_inhibitor_domain1 cd03236
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ...
33-172 1.96e-08

The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.


Pssm-ID: 213203 [Multi-domain]  Cd Length: 255  Bit Score: 54.29  E-value: 1.96e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  33 IFGVIGYSGAGKSTLVRLV--------NHLEAASNGQVIVD---GHDIMNYSDKMmRDIKKDIGMIFQHFNLLNSAtvFK 101
Cdd:cd03236   28 VLGLVGPNGIGKSTALKILagklkpnlGKFDDPPDWDEILDefrGSELQNYFTKL-LEGDVKVIVKPQYVDLIPKA--VK 104
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 493203783 102 NVAMpLILSKKSKTEIKQRVTEMLEFVGLSDKKdqfPDELSGGQKQRVAIARALVTNPKILLCDEATSALD 172
Cdd:cd03236  105 GKVG-ELLKKKDERGKLDELVDQLELRHVLDRN---IDQLSGGELQRVAIAAALARDADFYFFDEPSSYLD 171
3a01203 TIGR00954
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ...
139-205 2.13e-08

Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]


Pssm-ID: 273360 [Multi-domain]  Cd Length: 659  Bit Score: 55.53  E-value: 2.13e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 493203783  139 DELSGGQKQRVAIARALVTNPKILLCDEATSALDPATTASILTLLKNvnqtFGITIMMITHEMRVIK 205
Cdd:TIGR00954 581 DVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE----FGITLFSVSHRKSLWK 643
NIL pfam09383
NIL domain; This domain is found at the C-terminus of ABC transporter proteins involved in ...
268-339 2.69e-08

NIL domain; This domain is found at the C-terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family.


Pssm-ID: 462781 [Multi-domain]  Cd Length: 73  Bit Score: 50.14  E-value: 2.69e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 493203783  268 YKIFVEETQVTQPIINDLIQICGREVKILFSSMSEIQGNTVCYMWLRFNIDQQFDDTAInQYFKEKNIQFEE 339
Cdd:pfam09383   3 VRLTFPGESADEPVISRLAREFGVDVNILYGNIEEIQGTPFGSLILELPGDPEQIEAAL-AYLREQGVEVEV 73
PRK10938 PRK10938
putative molybdenum transport ATP-binding protein ModF; Provisional
25-230 2.83e-08

putative molybdenum transport ATP-binding protein ModF; Provisional


Pssm-ID: 182852 [Multi-domain]  Cd Length: 490  Bit Score: 55.02  E-value: 2.83e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  25 SFTVNHNDIFGVIGYSGAGKSTLVR-LVNHLEAASnGQVIVDGHDIMNYSdkmMRDIKKDIGMIFQHFN--LLNSATV-F 100
Cdd:PRK10938  23 SLTLNAGDSWAFVGANGSGKSALARaLAGELPLLS-GERQSQFSHITRLS---FEQLQKLVSDEWQRNNtdMLSPGEDdT 98
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 101 KNVAMPLILSKKSKTEIKQRVTEMLEFVGLSDKKDQFpdeLSGGQKQRVAIARALVTNPKILLCDEATSALDPATTASIL 180
Cdd:PRK10938  99 GRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKY---LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLA 175
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 493203783 181 TLLKNVNQTfGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFS 230
Cdd:PRK10938 176 ELLASLHQS-GITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ 224
PRK13543 PRK13543
heme ABC exporter ATP-binding protein CcmA;
26-173 3.09e-08

heme ABC exporter ATP-binding protein CcmA;


Pssm-ID: 184129 [Multi-domain]  Cd Length: 214  Bit Score: 53.31  E-value: 3.09e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  26 FTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNySDKM--------MRDIKKDIGMIfQHFNLLNSA 97
Cdd:PRK13543  32 FHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATR-GDRSrfmaylghLPGLKADLSTL-ENLHFLCGL 109
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 493203783  98 TVFKNVAMPlilskkskteikqrvTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEATSALDP 173
Cdd:PRK13543 110 HGRRAKQMP---------------GSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDL 170
PLN03232 PLN03232
ABC transporter C family member; Provisional
15-229 9.66e-08

ABC transporter C family member; Provisional


Pssm-ID: 215640 [Multi-domain]  Cd Length: 1495  Bit Score: 53.83  E-value: 9.66e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   15 KQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVR-LVNHLEAASNGQVIVDGHdiMNYSDKmmrdikkdIGMIFqhfnl 93
Cdd:PLN03232  627 KTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISaMLGELSHAETSSVVIRGS--VAYVPQ--------VSWIF----- 691
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   94 lnSATVFKNVAMplilskKSKTEiKQRVTEMLEFVGLSDKKDQFPDE-----------LSGGQKQRVAIARALVTNPKIL 162
Cdd:PLN03232  692 --NATVRENILF------GSDFE-SERYWRAIDVTALQHDLDLLPGRdlteigergvnISGGQKQRVSMARAVYSNSDIY 762
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 493203783  163 LCDEATSALDPATTASIL-TLLKNVNQtfGITIMMITHEMRVIKDIcNRVAVMEKGQVVETGTVKEVF 229
Cdd:PLN03232  763 IFDDPLSALDAHVAHQVFdSCMKDELK--GKTRVLVTNQLHFLPLM-DRIILVSEGMIKEEGTFAELS 827
MRP_assoc_pro TIGR00957
multi drug resistance-associated protein (MRP); This model describes multi drug ...
141-229 1.36e-07

multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]


Pssm-ID: 188098 [Multi-domain]  Cd Length: 1522  Bit Score: 53.41  E-value: 1.36e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   141 LSGGQKQRVAIARALVTNPKILLCDEATSALDPATTASILT-------LLKNVnqtfgiTIMMITHEMRVIKDIcNRVAV 213
Cdd:TIGR00957  761 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEhvigpegVLKNK------TRILVTHGISYLPQV-DVIIV 833
                           90
                   ....*....|....*.
gi 493203783   214 MEKGQVVETGTVKEVF 229
Cdd:TIGR00957  834 MSGGKISEMGSYQELL 849
Rli1 COG1245
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ...
2-215 3.42e-07

Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];


Pssm-ID: 440858 [Multi-domain]  Cd Length: 592  Bit Score: 51.71  E-value: 3.42e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   2 IEFRQVSKSFHKKKQTIDAlkdvsFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDghdiMNYSDKMMRdIK 81
Cdd:COG1245  342 VEYPDLTKSYGGFSLEVEG-----GEIREGEVLGIVGPNGIGKTTFAKILAGVLKPDEGEVDED----LKISYKPQY-IS 411
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 KDIGMIFQhfnllnsaTVFKNVAMPLILSKKSKTEIKQRVtemlefvGLSDKKDQFPDELSGGQKQRVAIARALVTNPKI 161
Cdd:COG1245  412 PDYDGTVE--------EFLRSANTDDFGSSYYKTEIIKPL-------GLEKLLDKNVKDLSGGELQRVAIAACLSRDADL 476
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 493203783 162 LLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAVME 215
Cdd:COG1245  477 YLLDEPSAHLDVEQRLAVAKAIRRFAENRGKTAMVVDHDIYLIDYISDRLMVFE 530
hmuV PRK13547
heme ABC transporter ATP-binding protein;
141-228 5.59e-07

heme ABC transporter ATP-binding protein;


Pssm-ID: 184132 [Multi-domain]  Cd Length: 272  Bit Score: 50.21  E-value: 5.59e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 141 LSGGQKQRVAIARAL---------VTNPKILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRV 211
Cdd:PRK13547 146 LSGGELARVQFARVLaqlwpphdaAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRI 225
                         90
                 ....*....|....*..
gi 493203783 212 AVMEKGQVVETGTVKEV 228
Cdd:PRK13547 226 AMLADGAIVAHGAPADV 242
ABCC_SUR1_N cd03290
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ...
6-202 6.56e-07

ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.


Pssm-ID: 213257 [Multi-domain]  Cd Length: 218  Bit Score: 49.64  E-value: 6.56e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   6 QVSKSFHKKKQTIDALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSDKMMRDIKK-DI 84
Cdd:cd03290    2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRySV 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  85 GMIFQHFNLLNsATVFKNVAMPLILSKkskteikQRVTEMLEFVGLSDKKDQFP--DE---------LSGGQKQRVAIAR 153
Cdd:cd03290   82 AYAAQKPWLLN-ATVEENITFGSPFNK-------QRYKAVTDACSLQPDIDLLPfgDQteigerginLSGGQRQRICVAR 153
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 493203783 154 ALVTNPKILLCDEATSALDPATT-----ASILTLLKNVNQtfgiTIMMITHEMR 202
Cdd:cd03290  154 ALYQNTNIVFLDDPFSALDIHLSdhlmqEGILKFLQDDKR----TLVLVTHKLQ 203
PRK13540 PRK13540
cytochrome c biogenesis protein CcmA; Provisional
21-200 9.10e-07

cytochrome c biogenesis protein CcmA; Provisional


Pssm-ID: 184127 [Multi-domain]  Cd Length: 200  Bit Score: 48.79  E-value: 9.10e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  21 LKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDImnysDKMMRDIKKDIGMIFQHFNLLNSATVF 100
Cdd:PRK13540  17 LQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSI----KKDLCTYQKQLCFVGHRSGINPYLTLR 92
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 101 KNVAMPLILSKKSkteikQRVTEMLEFVGLSDKKDqFP-DELSGGQKQRVAIARALVTNPKILLCDEATSALDPATTASI 179
Cdd:PRK13540  93 ENCLYDIHFSPGA-----VGITELCRLFSLEHLID-YPcGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTI 166
                        170       180
                 ....*....|....*....|.
gi 493203783 180 LTLLKNvNQTFGITIMMITHE 200
Cdd:PRK13540 167 ITKIQE-HRAKGGAVLLTSHQ 186
PTZ00243 PTZ00243
ABC transporter; Provisional
21-223 4.29e-06

ABC transporter; Provisional


Pssm-ID: 240327 [Multi-domain]  Cd Length: 1560  Bit Score: 48.62  E-value: 4.29e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   21 LKDVSFTVNHNDIFGVIGYSGAGKSTLVR-LVNHLEAaSNGQVIVDghdimnysdkmmrdikKDIGMIFQHFNLLNsATV 99
Cdd:PTZ00243  676 LRDVSVSVPRGKLTVVLGATGSGKSTLLQsLLSQFEI-SEGRVWAE----------------RSIAYVPQQAWIMN-ATV 737
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  100 FKNVampLILSKKSKTEIKQ--RVTEMLEFV-----GLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEATSALD 172
Cdd:PTZ00243  738 RGNI---LFFDEEDAARLADavRVSQLEADLaqlggGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALD 814
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 493203783  173 PATTASIltllknVNQTF-----GITIMMITHEMRVIKdICNRVAVMEKGQVVETG 223
Cdd:PTZ00243  815 AHVGERV------VEECFlgalaGKTRVLATHQVHVVP-RADYVVALGDGRVEFSG 863
ABC_UvrA cd03238
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ...
20-205 5.68e-06

ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.


Pssm-ID: 213205 [Multi-domain]  Cd Length: 176  Bit Score: 46.16  E-value: 5.68e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  20 ALKDVSFTVNHNDIFGVIGYSGAGKSTLV----------RLVNHLEAASNGQVIVdghdimnySDKMMRDIKKDIGMifq 89
Cdd:cd03238   10 NLQNLDVSIPLNVLVVVTGVSGSGKSTLVneglyasgkaRLISFLPKFSRNKLIF--------IDQLQFLIDVGLGY--- 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  90 hfnllnsatvfknvampLILSKKSKTeikqrvtemlefvglsdkkdqfpdeLSGGQKQRVAIARALVTNPK--ILLCDEA 167
Cdd:cd03238   79 -----------------LTLGQKLST-------------------------LSGGELQRVKLASELFSEPPgtLFILDEP 116
                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 493203783 168 TSALDPATTASILTLLKNVNQTfGITIMMITHEMRVIK 205
Cdd:cd03238  117 STGLHQQDINQLLEVIKGLIDL-GNTVILIEHNLDVLS 153
PLN03073 PLN03073
ABC transporter F family; Provisional
22-219 1.04e-05

ABC transporter F family; Provisional


Pssm-ID: 215558 [Multi-domain]  Cd Length: 718  Bit Score: 47.16  E-value: 1.04e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  22 KDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVivdghdimnysdkmMRDIKKDIGMIFQH----FNLLNSA 97
Cdd:PLN03073 526 KNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV--------------FRSAKVRMAVFSQHhvdgLDLSSNP 591
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  98 TVFKNVAMPLILskkskteiKQRVTEMLEFVGLSDKKDQFPD-ELSGGQKQRVAIARALVTNPKILLCDEATSALD-PAT 175
Cdd:PLN03073 592 LLYMMRCFPGVP--------EQKLRAHLGSFGVTGNLALQPMyTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDlDAV 663
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 493203783 176 TASILTLLknvnqTFGITIMMITHEMRVIKDICNRVAVMEKGQV 219
Cdd:PLN03073 664 EALIQGLV-----LFQGGVLMVSHDEHLISGSVDELWVVSEGKV 702
PRK13409 PRK13409
ribosome biogenesis/translation initiation ATPase RLI;
27-215 1.12e-05

ribosome biogenesis/translation initiation ATPase RLI;


Pssm-ID: 184037 [Multi-domain]  Cd Length: 590  Bit Score: 47.11  E-value: 1.12e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  27 TVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDghdiMNYSDKMMRdIKKDIGMIFQHFnlLNSATvfknvamP 106
Cdd:PRK13409 361 EIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE----LKISYKPQY-IKPDYDGTVEDL--LRSIT-------D 426
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 107 LILSKKSKTEIKQRVtemlefvGLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEATSALDPATTASILTLLKNV 186
Cdd:PRK13409 427 DLGSSYYKSEIIKPL-------QLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRI 499
                        170       180
                 ....*....|....*....|....*....
gi 493203783 187 NQTFGITIMMITHEMRVIKDICNRVAVME 215
Cdd:PRK13409 500 AEEREATALVVDHDIYMIDYISDRLMVFE 528
PRK13409 PRK13409
ribosome biogenesis/translation initiation ATPase RLI;
35-172 1.98e-05

ribosome biogenesis/translation initiation ATPase RLI;


Pssm-ID: 184037 [Multi-domain]  Cd Length: 590  Bit Score: 46.34  E-value: 1.98e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  35 GVIGYSGAGKSTLVR---------LVNHLEAASNGQVI--VDGHDIMNY----SDKMMRDIKKDigmifQHFNLLnsATV 99
Cdd:PRK13409 103 GILGPNGIGKTTAVKilsgelipnLGDYEEEPSWDEVLkrFRGTELQNYfkklYNGEIKVVHKP-----QYVDLI--PKV 175
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 493203783 100 FKNVAMPLIlskkSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEATSALD 172
Cdd:PRK13409 176 FKGKVRELL----KKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLD 244
PLN03073 PLN03073
ABC transporter F family; Provisional
19-172 1.99e-05

ABC transporter F family; Provisional


Pssm-ID: 215558 [Multi-domain]  Cd Length: 718  Bit Score: 46.39  E-value: 1.99e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  19 DALKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNhLEA----ASNGQVI-----VDGHDIMNYSDKMMRDIKKDIGM--- 86
Cdd:PLN03073 191 DLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMA-MHAidgiPKNCQILhveqeVVGDDTTALQCVLNTDIERTQLLeee 269
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  87 --IFQHFNLLNSATVFKNVAMPLILSKKsKTEIKQRVTEM---LEFV--------------GLS---DKKDQFPDELSGG 144
Cdd:PLN03073 270 aqLVAQQRELEFETETGKGKGANKDGVD-KDAVSQRLEEIykrLELIdaytaearaasilaGLSftpEMQVKATKTFSGG 348
                        170       180
                 ....*....|....*....|....*...
gi 493203783 145 QKQRVAIARALVTNPKILLCDEATSALD 172
Cdd:PLN03073 349 WRMRIALARALFIEPDLLLLDEPTNHLD 376
ABC_RNaseL_inhibitor cd03222
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ...
134-235 2.11e-05

ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.


Pssm-ID: 213189 [Multi-domain]  Cd Length: 177  Bit Score: 44.49  E-value: 2.11e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 134 KDQFPDeLSGGQKQRVAIARALVTNPKILLCDEATSALDPATTASILTLLKNVNQTFGITIMMITHEMRVIKDICNRVAV 213
Cdd:cd03222   66 KPQYID-LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHV 144
                         90       100
                 ....*....|....*....|..
gi 493203783 214 MEkGQVVETGTvkevFSHPKTT 235
Cdd:cd03222  145 FE-GEPGVYGI----ASQPKGT 161
PRK13541 PRK13541
cytochrome c biogenesis protein CcmA; Provisional
1-205 2.18e-05

cytochrome c biogenesis protein CcmA; Provisional


Pssm-ID: 184128 [Multi-domain]  Cd Length: 195  Bit Score: 44.48  E-value: 2.18e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   1 MIEFRQVSKSFHKKKqtidaLKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNYSdkmmrdi 80
Cdd:PRK13541   1 MLSLHQLQFNIEQKN-----LFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA------- 68
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  81 KKDIGMIFQHFNLLNSATVFKNVAMPLILSKKSKTeikqrVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPK 160
Cdd:PRK13541  69 KPYCTYIGHNLGLKLEMTVFENLKFWSEIYNSAET-----LYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSD 143
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 493203783 161 ILLCDEATSALDPATTASILTLLKNVNQTFGItIMMITHEMRVIK 205
Cdd:PRK13541 144 LWLLDEVETNLSKENRDLLNNLIVMKANSGGI-VLLSSHLESSIK 187
GguA NF040905
sugar ABC transporter ATP-binding protein;
141-220 2.38e-05

sugar ABC transporter ATP-binding protein;


Pssm-ID: 468840 [Multi-domain]  Cd Length: 500  Bit Score: 45.94  E-value: 2.38e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 141 LSGGQKQRVAIARALVTNPKILLCDEATSALDPATTASILTLlknVNQ--TFGITIMMITHEMRVIKDICNRVAVMEKGQ 218
Cdd:NF040905 405 LSGGNQQKVVLSKWLFTDPDVLILDEPTRGIDVGAKYEIYTI---INElaAEGKGVIVISSELPELLGMCDRIYVMNEGR 481

                 ..
gi 493203783 219 VV 220
Cdd:NF040905 482 IT 483
PLN03130 PLN03130
ABC transporter C family member; Provisional
141-227 2.94e-05

ABC transporter C family member; Provisional


Pssm-ID: 215595 [Multi-domain]  Cd Length: 1622  Bit Score: 45.88  E-value: 2.94e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  141 LSGGQKQRVAIARALVTNPKILLCDEATSALDPATTASIL-TLLKNVNQtfGITIMMITHEMRVIKDIcNRVAVMEKGQV 219
Cdd:PLN03130  741 ISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFdKCIKDELR--GKTRVLVTNQLHFLSQV-DRIILVHEGMI 817

                  ....*...
gi 493203783  220 VETGTVKE 227
Cdd:PLN03130  818 KEEGTYEE 825
PRK10636 PRK10636
putative ABC transporter ATP-binding protein; Provisional
21-221 3.46e-05

putative ABC transporter ATP-binding protein; Provisional


Pssm-ID: 236729 [Multi-domain]  Cd Length: 638  Bit Score: 45.55  E-value: 3.46e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  21 LKDVSFTVNHNDIFGVIGYSGAGKSTLVRLVNHLEAASNGQVIVDGHDIMNY------------------SDKMMRDIKK 82
Cdd:PRK10636  17 LDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWvnqetpalpqpaleyvidGDREYRQLEA 96
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  83 DIgmifQHFNLLNSATvfknvAMPLILSKKSKTE---IKQRVTEMLEFVGLSDKKDQFP-DELSGGQKQRVAIARALVTN 158
Cdd:PRK10636  97 QL----HDANERNDGH-----AIATIHGKLDAIDawtIRSRAASLLHGLGFSNEQLERPvSDFSGGWRMRLNLAQALICR 167
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 493203783 159 PKILLCDEATSALDPATTASILTLLKNVNQtfgiTIMMITHEMRVIKDICNRVAVMEKGQVVE 221
Cdd:PRK10636 168 SDLLLLDEPTNHLDLDAVIWLEKWLKSYQG----TLILISHDRDFLDPIVDKIIHIEQQSLFE 226
Rli1 COG1245
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ...
33-172 1.18e-04

Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];


Pssm-ID: 440858 [Multi-domain]  Cd Length: 592  Bit Score: 43.62  E-value: 1.18e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  33 IFGVIGYSGAGKSTLVR---------LVNHLEAASNGQVI--VDGHDIMNY----SDKMMRDIKKDigmifQHFNLLnsA 97
Cdd:COG1245  101 VTGILGPNGIGKSTALKilsgelkpnLGDYDEEPSWDEVLkrFRGTELQDYfkklANGEIKVAHKP-----QYVDLI--P 173
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 493203783  98 TVFKNVAMPLIlskkSKTEIKQRVTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEATSALD 172
Cdd:COG1245  174 KVFKGTVRELL----EKVDERGKLDELAEKLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPSSYLD 244
PLN03140 PLN03140
ABC transporter G family member; Provisional
125-223 1.91e-04

ABC transporter G family member; Provisional


Pssm-ID: 215599 [Multi-domain]  Cd Length: 1470  Bit Score: 43.30  E-value: 1.91e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  125 LEFVGLSDKKDQF-PDEL----SGGQKQRVAIARALVTNPKILLCDEATSALDPATTASILTLLKN-VNQTFGITIMMIT 198
Cdd:PLN03140  316 LKILGLDICKDTIvGDEMirgiSGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQiVHLTEATVLMSLL 395
                          90       100
                  ....*....|....*....|....*
gi 493203783  199 HEMRVIKDICNRVAVMEKGQVVETG 223
Cdd:PLN03140  396 QPAPETFDLFDDIILLSEGQIVYQG 420
uvra TIGR00630
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ...
141-228 3.65e-04

excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273184 [Multi-domain]  Cd Length: 925  Bit Score: 42.31  E-value: 3.65e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  141 LSGGQKQRVAIARAL---VTNPKILLCDEATSALDPATTASILTLLKN-VNQtfGITIMMITHEMRVIKdicnrVA---- 212
Cdd:TIGR00630 830 LSGGEAQRIKLAKELskrSTGRTLYILDEPTTGLHFDDIKKLLEVLQRlVDK--GNTVVVIEHNLDVIK-----TAdyii 902
                          90       100
                  ....*....|....*....|..
gi 493203783  213 ------VMEKGQVVETGTVKEV 228
Cdd:TIGR00630 903 dlgpegGDGGGTVVASGTPEEV 924
SbcC_Walker_B pfam13558
SbcC/RAD50-like, Walker B motif; This entry represents the Walker B domain of RAD50 from ...
140-185 9.53e-04

SbcC/RAD50-like, Walker B motif; This entry represents the Walker B domain of RAD50 from eukaryotes and the prokaryotic homolog SbcCD complex subunit C. RAD50-ATPase forms a complex with Mre11-nuclease that detects and processes diverse and obstructed DNA ends. This domain is separated of the Walker A domain by a long coiled-coil domain and forms the nucleotide-binding domain (NBD) when the coiled coils fold back on themselves and bring together Walker A and B domains. Two RAD50-NBDs forms heterotetramers with a Mre11 nuclease dimer that assemble as catalytic head module that binds and cleaves DNA in an ATP-dependent reaction. Through secondary structural analysis, it has been suggested that there is a wide structural conservation in the Rad50/SMC protein family as seen in structural similarities between RAD50's hook and ABC-ATPase MukB's elbow region.


Pssm-ID: 463921 [Multi-domain]  Cd Length: 90  Bit Score: 37.98  E-value: 9.53e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 493203783  140 ELSGGQKQR---VAIARALV----------TNPKILLCDEATSALDPATTASILTLLKN 185
Cdd:pfam13558  32 GLSGGEKQLlayLPLAAALAaqygsaegrpPAPRLVFLDEAFAKLDEENIRTALELLRA 90
PRK15064 PRK15064
ABC transporter ATP-binding protein; Provisional
140-217 1.95e-03

ABC transporter ATP-binding protein; Provisional


Pssm-ID: 237894 [Multi-domain]  Cd Length: 530  Bit Score: 39.88  E-value: 1.95e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 493203783 140 ELSGGQKQRVAIARALVTNPKILLCDEATSALDPATTASILTLLKNVNQTFGItimmITHEMRVIKDICNRVAVMEKG 217
Cdd:PRK15064 155 EVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMII----ISHDRHFLNSVCTHMADLDYG 228
ABC_Rad50 cd03240
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ...
9-210 3.52e-03

ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.


Pssm-ID: 213207 [Multi-domain]  Cd Length: 204  Bit Score: 37.97  E-value: 3.52e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   9 KSFHKKkQTIDALKDvsftvnhndIFGVIGYSGAGKSTLvrlvnhLEAASngqVIVDGHDIMNYS-----DKMMR--DIK 81
Cdd:cd03240   10 RSFHER-SEIEFFSP---------LTLIVGQNGAGKTTI------IEALK---YALTGELPPNSKggahdPKLIRegEVR 70
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  82 KDIGMIFQHFN-----LLNSATVFKNVAMplilskKSKTEIKQRVTEMLEFvglsdkkdqfpdeLSGGQKQ------RVA 150
Cdd:cd03240   71 AQVKLAFENANgkkytITRSLAILENVIF------CHQGESNWPLLDMRGR-------------CSGGEKVlasliiRLA 131
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 493203783 151 IARALVTNPKILLCDEATSALDPAT-TASILTLLKNVNQTFGITIMMITHE----------MRVIKDICNR 210
Cdd:cd03240  132 LAETFGSNCGILALDEPTTNLDEENiEESLAEIIEERKSQKNFQLIVITHDeelvdaadhiYRVEKDGRQK 202
ABC_UvrA_II cd03271
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair ...
140-224 4.10e-03

ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.


Pssm-ID: 213238 [Multi-domain]  Cd Length: 261  Bit Score: 38.36  E-value: 4.10e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783 140 ELSGGQKQRVAIARAL---VTNPKILLCDEATSALDPATTASILTLLKN-VNQtfGITIMMITHEMRVIKdICNRVAVM- 214
Cdd:cd03271  169 TLSGGEAQRIKLAKELskrSTGKTLYILDEPTTGLHFHDVKKLLEVLQRlVDK--GNTVVVIEHNLDVIK-CADWIIDLg 245
                         90
                 ....*....|....*
gi 493203783 215 -----EKGQVVETGT 224
Cdd:cd03271  246 peggdGGGQVVASGT 260
uvra TIGR00630
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ...
62-238 4.43e-03

excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273184 [Multi-domain]  Cd Length: 925  Bit Score: 38.84  E-value: 4.43e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783   62 VIVDGHDIMNYSDKMMRDIkkdigMIFqhFNLLNSATVFKNVAMPLIlskkskTEIKQRVTEMLEfVGLSD-KKDQFPDE 140
Cdd:TIGR00630 423 VTVGGKSIADVSELSIREA-----HEF--FNQLTLTPEEKKIAEEVL------KEIRERLGFLID-VGLDYlSLSRAAGT 488
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493203783  141 LSGGQKQRVAIAR----ALVTNPKILlcDEATSALDPATTASILTLLKNVnQTFGITIMMITHEMRVIK------DICNR 210
Cdd:TIGR00630 489 LSGGEAQRIRLATqigsGLTGVLYVL--DEPSIGLHQRDNRRLINTLKRL-RDLGNTLIVVEHDEDTIRaadyviDIGPG 565
                         170       180
                  ....*....|....*....|....*...
gi 493203783  211 vAVMEKGQVVETGTVKEVFSHPKTTIAQ 238
Cdd:TIGR00630 566 -AGEHGGEVVASGTPEEILANPDSLTGQ 592
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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