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Conserved domains on  [gi|493076630|ref|WP_006123601|]
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MULTISPECIES: helix-turn-helix domain-containing protein [Streptomyces]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HTH_58 super family cl44983
Helix-turn-helix domain; This family of proteins is functionally uncharacterized. However, it ...
 5-66 1.91e-22

Helix-turn-helix domain; This family of proteins is functionally uncharacterized. However, it contains a helix-turn-helix domain which strongly suggests these proteins are transcriptional regulators. This family of proteins is primarily found in actinobacteria. Proteins in this family are typically between 69 and 86 amino acids in length.


The actual alignment was detected with superfamily member pfam19575:

Pssm-ID: 437407  Cd Length: 73  Bit Score: 81.73  E-value: 1.91e-22
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 493076630   5 LKKGSRVTGAARDKLAADLKKKYDSGASIRALAEETGRSYGFVHRMLSESGVTLRGRGGATR 66
Cdd:pfam19575 11 LKKGARITGPTRDKLAADLKKKYEKGASIRALAESTGRSYGFVHRVLSESGVQLRGRGGATR 72
 
Name Accession Description Interval E-value
HTH_58 pfam19575
Helix-turn-helix domain; This family of proteins is functionally uncharacterized. However, it ...
 5-66 1.91e-22

Helix-turn-helix domain; This family of proteins is functionally uncharacterized. However, it contains a helix-turn-helix domain which strongly suggests these proteins are transcriptional regulators. This family of proteins is primarily found in actinobacteria. Proteins in this family are typically between 69 and 86 amino acids in length.


Pssm-ID: 437407  Cd Length: 73  Bit Score: 81.73  E-value: 1.91e-22
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 493076630   5 LKKGSRVTGAARDKLAADLKKKYDSGASIRALAEETGRSYGFVHRMLSESGVTLRGRGGATR 66
Cdd:pfam19575 11 LKKGARITGPTRDKLAADLKKKYEKGASIRALAESTGRSYGFVHRVLSESGVQLRGRGGATR 72
 
Name Accession Description Interval E-value
HTH_58 pfam19575
Helix-turn-helix domain; This family of proteins is functionally uncharacterized. However, it ...
 5-66 1.91e-22

Helix-turn-helix domain; This family of proteins is functionally uncharacterized. However, it contains a helix-turn-helix domain which strongly suggests these proteins are transcriptional regulators. This family of proteins is primarily found in actinobacteria. Proteins in this family are typically between 69 and 86 amino acids in length.


Pssm-ID: 437407  Cd Length: 73  Bit Score: 81.73  E-value: 1.91e-22
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 493076630   5 LKKGSRVTGAARDKLAADLKKKYDSGASIRALAEETGRSYGFVHRMLSESGVTLRGRGGATR 66
Cdd:pfam19575 11 LKKGARITGPTRDKLAADLKKKYEKGASIRALAESTGRSYGFVHRVLSESGVQLRGRGGATR 72
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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