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Conserved domains on  [gi|492740681|ref|WP_005942846|]
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MULTISPECIES: DUF4120 family protein [Bacteroidales]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4120 super family cl16289
Domain of unknown function (DUF4120); Based on Bacteroides thetaiotaomicron gene BT_2585, a ...
 2-96 3.76e-73

Domain of unknown function (DUF4120); Based on Bacteroides thetaiotaomicron gene BT_2585, a putative uncharacterized protein. As seen in gene expression experiments (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE2231), it appears to be upregulated in the presence of host or vs when in culture.


The actual alignment was detected with superfamily member pfam13496:

Pssm-ID: 463899  Cd Length: 96  Bit Score: 211.40  E-value: 3.76e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492740681   2 KILN-EEHFENVRRYAESIGDTSLQKCLERLKSWEENPDCPCEISLYYDHAPYSFGFTQRYPDGRTGIVGGLLYHGIPDR 80
Cdd:pfam13496  1 KILCkEEHFENVRQYAESIGDTSLQKCLERLEAWEENPDRPCEIELYHDHAPYSFGFTQRYPDGRRGIVGGLLYHGIPDE 80

                         90
                 ....*....|....*.
gi 492740681  81 SFAVTLQPFHGWQIHT 96
Cdd:pfam13496 81 SFAVQLQPFHGWQIHT 96
 
Name Accession Description Interval E-value
DUF4120 pfam13496
Domain of unknown function (DUF4120); Based on Bacteroides thetaiotaomicron gene BT_2585, a ...
 2-96 3.76e-73

Domain of unknown function (DUF4120); Based on Bacteroides thetaiotaomicron gene BT_2585, a putative uncharacterized protein. As seen in gene expression experiments (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE2231), it appears to be upregulated in the presence of host or vs when in culture.


Pssm-ID: 463899  Cd Length: 96  Bit Score: 211.40  E-value: 3.76e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492740681   2 KILN-EEHFENVRRYAESIGDTSLQKCLERLKSWEENPDCPCEISLYYDHAPYSFGFTQRYPDGRTGIVGGLLYHGIPDR 80
Cdd:pfam13496  1 KILCkEEHFENVRQYAESIGDTSLQKCLERLEAWEENPDRPCEIELYHDHAPYSFGFTQRYPDGRRGIVGGLLYHGIPDE 80

                         90
                 ....*....|....*.
gi 492740681  81 SFAVTLQPFHGWQIHT 96
Cdd:pfam13496 81 SFAVQLQPFHGWQIHT 96
 
Name Accession Description Interval E-value
DUF4120 pfam13496
Domain of unknown function (DUF4120); Based on Bacteroides thetaiotaomicron gene BT_2585, a ...
 2-96 3.76e-73

Domain of unknown function (DUF4120); Based on Bacteroides thetaiotaomicron gene BT_2585, a putative uncharacterized protein. As seen in gene expression experiments (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE2231), it appears to be upregulated in the presence of host or vs when in culture.


Pssm-ID: 463899  Cd Length: 96  Bit Score: 211.40  E-value: 3.76e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492740681   2 KILN-EEHFENVRRYAESIGDTSLQKCLERLKSWEENPDCPCEISLYYDHAPYSFGFTQRYPDGRTGIVGGLLYHGIPDR 80
Cdd:pfam13496  1 KILCkEEHFENVRQYAESIGDTSLQKCLERLEAWEENPDRPCEIELYHDHAPYSFGFTQRYPDGRRGIVGGLLYHGIPDE 80

                         90
                 ....*....|....*.
gi 492740681  81 SFAVTLQPFHGWQIHT 96
Cdd:pfam13496 81 SFAVQLQPFHGWQIHT 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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