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Conserved domains on  [gi|492450380|ref|WP_005849012|]
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MULTISPECIES: DUF5056 domain-containing protein [Phocaeicola]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF5056 super family cl24897
Domain of unknown function (DUF5056); This family consists of uncharacterized proteins around ...
 5-96 6.88e-41

Domain of unknown function (DUF5056); This family consists of uncharacterized proteins around 360 residues in length and is mainly found in various Bacteroides species. The function of this family is unknown.


The actual alignment was detected with superfamily member pfam16479:

Pssm-ID: 435362  Cd Length: 93  Bit Score: 130.13  E-value: 6.88e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492450380    5 DDTLIKNFMLANKHEIEDNGFSRGVIRRLPQPAQWLSDILSVTCAIVCCALFYIFNGFEILCQTISDIVTSQTYYLVS-D 83
Cdd:pfam16479   1 DDKLLKQFFAENKQEIADNGFSRRVMRRLPQRSNRLARIWTAVCATLAVVLFVTLGGLQLLKDTLREFFTSTIQYGASiD 80

                          90
                  ....*....|...
gi 492450380   84 ANFQSLVIATAVL 96
Cdd:pfam16479  81 LDPKSLLIAAVVL 93
 
Name Accession Description Interval E-value
DUF5056 pfam16479
Domain of unknown function (DUF5056); This family consists of uncharacterized proteins around ...
 5-96 6.88e-41

Domain of unknown function (DUF5056); This family consists of uncharacterized proteins around 360 residues in length and is mainly found in various Bacteroides species. The function of this family is unknown.


Pssm-ID: 435362  Cd Length: 93  Bit Score: 130.13  E-value: 6.88e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492450380    5 DDTLIKNFMLANKHEIEDNGFSRGVIRRLPQPAQWLSDILSVTCAIVCCALFYIFNGFEILCQTISDIVTSQTYYLVS-D 83
Cdd:pfam16479   1 DDKLLKQFFAENKQEIADNGFSRRVMRRLPQRSNRLARIWTAVCATLAVVLFVTLGGLQLLKDTLREFFTSTIQYGASiD 80

                          90
                  ....*....|...
gi 492450380   84 ANFQSLVIATAVL 96
Cdd:pfam16479  81 LDPKSLLIAAVVL 93
 
Name Accession Description Interval E-value
DUF5056 pfam16479
Domain of unknown function (DUF5056); This family consists of uncharacterized proteins around ...
 5-96 6.88e-41

Domain of unknown function (DUF5056); This family consists of uncharacterized proteins around 360 residues in length and is mainly found in various Bacteroides species. The function of this family is unknown.


Pssm-ID: 435362  Cd Length: 93  Bit Score: 130.13  E-value: 6.88e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492450380    5 DDTLIKNFMLANKHEIEDNGFSRGVIRRLPQPAQWLSDILSVTCAIVCCALFYIFNGFEILCQTISDIVTSQTYYLVS-D 83
Cdd:pfam16479   1 DDKLLKQFFAENKQEIADNGFSRRVMRRLPQRSNRLARIWTAVCATLAVVLFVTLGGLQLLKDTLREFFTSTIQYGASiD 80

                          90
                  ....*....|...
gi 492450380   84 ANFQSLVIATAVL 96
Cdd:pfam16479  81 LDPKSLLIAAVVL 93
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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