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Conserved domains on  [gi|492395596|ref|WP_005830863|]
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MULTISPECIES: lipocalin family protein [Bacteroides]

Protein Classification

lipocalin family protein( domain architecture ID 10614779)

lipocalin/fatty-acid binding family protein may be bind and transport small hydrophobic molecules, such as lipids, steroid hormones, bilins, and retinoids

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Lipocalin_4 pfam13648
Lipocalin-like domain;
38-124 4.18e-07

Lipocalin-like domain;


:

Pssm-ID: 404527  Cd Length: 89  Bit Score: 45.22  E-value: 4.18e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492395596   38 LIGKWQttwekIHKVENDKEVVTSDEAYTNGLWEFKADG-------TCTEGYADGGYTETSRWSLKDNKLTISYDDGYSD 110
Cdd:pfam13648   1 LVGTWK-----LTSITYDGDPETLDECEKKSYITFNADGgtfytydTNDGGSCNYSKSESGTYTISGNTLTITYTDGTSK 75

                          90
                  ....*....|....
gi 492395596  111 VLTVNELTATKLVL 124
Cdd:pfam13648  76 VSYIIELTGNTLVL 89
 
Name Accession Description Interval E-value
Lipocalin_4 pfam13648
Lipocalin-like domain;
38-124 4.18e-07

Lipocalin-like domain;


Pssm-ID: 404527  Cd Length: 89  Bit Score: 45.22  E-value: 4.18e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492395596   38 LIGKWQttwekIHKVENDKEVVTSDEAYTNGLWEFKADG-------TCTEGYADGGYTETSRWSLKDNKLTISYDDGYSD 110
Cdd:pfam13648   1 LVGTWK-----LTSITYDGDPETLDECEKKSYITFNADGgtfytydTNDGGSCNYSKSESGTYTISGNTLTITYTDGTSK 75

                          90
                  ....*....|....
gi 492395596  111 VLTVNELTATKLVL 124
Cdd:pfam13648  76 VSYIIELTGNTLVL 89
 
Name Accession Description Interval E-value
Lipocalin_4 pfam13648
Lipocalin-like domain;
38-124 4.18e-07

Lipocalin-like domain;


Pssm-ID: 404527  Cd Length: 89  Bit Score: 45.22  E-value: 4.18e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492395596   38 LIGKWQttwekIHKVENDKEVVTSDEAYTNGLWEFKADG-------TCTEGYADGGYTETSRWSLKDNKLTISYDDGYSD 110
Cdd:pfam13648   1 LVGTWK-----LTSITYDGDPETLDECEKKSYITFNADGgtfytydTNDGGSCNYSKSESGTYTISGNTLTITYTDGTSK 75

                          90
                  ....*....|....
gi 492395596  111 VLTVNELTATKLVL 124
Cdd:pfam13648  76 VSYIIELTGNTLVL 89
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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