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Conserved domains on  [gi|492279200|ref|WP_005797215|]
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radical SAM-associated putative lipoprotein [Bacteroides fragilis]

Protein Classification

peptidase associated/transthyretin-like domain-containing protein; TonB-dependent receptor( domain architecture ID 10024464)

peptidase associated/transthyretin-like domain-containing protein| TonB dependent receptor having a carboxypeptidase regulatory-like domain, may act as a channel to allow import of extracellular nutrients, such as iron-siderophore complexes or non-Fe compounds

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
lipo_with_rSAM TIGR04134
putative lipoprotein, rSAM/lipoprotein system; Members of this family are Bacteroidetes ...
 7-154 5.29e-60

putative lipoprotein, rSAM/lipoprotein system; Members of this family are Bacteroidetes lineage putative lipoproteins that always occur in pairs with a radical SAM enzyme, TIGR04133, from a branch of the radical SAM superfamily in which many members perform peptide or protein modifications. In some members, the region distal to the Cys of the putative lipoprotein cleavage motif is duplicated.


:

Pssm-ID: 200385  Cd Length: 150  Bit Score: 182.97  E-value: 5.29e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492279200    7 QWLRYSNRALSGLLMLFGFVSCDNGGGDIPVEYGMPSAKYRVKGKVIDaDTQEPVPGIEVVTGAVHTGDGKEWLSYPDTL 86
Cdd:TIGR04134   1 KVLRLLNRLLSGFLGLLGFASCDEEGGEIPVEYGTPYAKYEVKGKVTD-EEGEPIEDIQVIVKRKYSGDDRSWVYLTDTV 79

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 492279200   87 ITDKDGAFATER-TEFPSKKYRFIVRDVDGDANGTYSKDSVEV--EAGGFTGGSHWYRGETSIDKTIEIKK 154
Cdd:TIGR04134  80 YTDANGEFQIENeVTFGFNKYRVIAEDIDGVKNGRYASDSVDVkmESDDFKGGSGWYEGSDKKEIDIKLKK 150
 
Name Accession Description Interval E-value
lipo_with_rSAM TIGR04134
putative lipoprotein, rSAM/lipoprotein system; Members of this family are Bacteroidetes ...
 7-154 5.29e-60

putative lipoprotein, rSAM/lipoprotein system; Members of this family are Bacteroidetes lineage putative lipoproteins that always occur in pairs with a radical SAM enzyme, TIGR04133, from a branch of the radical SAM superfamily in which many members perform peptide or protein modifications. In some members, the region distal to the Cys of the putative lipoprotein cleavage motif is duplicated.


Pssm-ID: 200385  Cd Length: 150  Bit Score: 182.97  E-value: 5.29e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492279200    7 QWLRYSNRALSGLLMLFGFVSCDNGGGDIPVEYGMPSAKYRVKGKVIDaDTQEPVPGIEVVTGAVHTGDGKEWLSYPDTL 86
Cdd:TIGR04134   1 KVLRLLNRLLSGFLGLLGFASCDEEGGEIPVEYGTPYAKYEVKGKVTD-EEGEPIEDIQVIVKRKYSGDDRSWVYLTDTV 79

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 492279200   87 ITDKDGAFATER-TEFPSKKYRFIVRDVDGDANGTYSKDSVEV--EAGGFTGGSHWYRGETSIDKTIEIKK 154
Cdd:TIGR04134  80 YTDANGEFQIENeVTFGFNKYRVIAEDIDGVKNGRYASDSVDVkmESDDFKGGSGWYEGSDKKEIDIKLKK 150
CarbopepD_reg_2 pfam13715
CarboxypepD_reg-like domain; This domain family is found in bacteria, archaea and eukaryotes, ...
 48-111 5.28e-03

CarboxypepD_reg-like domain; This domain family is found in bacteria, archaea and eukaryotes, and is approximately 90 amino acids in length. The family is found in association with pfam07715 and pfam00593.


Pssm-ID: 433425 [Multi-domain]  Cd Length: 88  Bit Score: 34.49  E-value: 5.28e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 492279200   48 VKGKVIDADTQEPVPGIEVVTGAVHTGDgkewlsypdtlITDKDGAFATERTefPSKKYRFIVR 111
Cdd:pfam13715   1 ISGTVVDENTGEPLPGATVYVKGTTKGT-----------VTDADGNFELKNL--PAGTYTLVVS 51
 
Name Accession Description Interval E-value
lipo_with_rSAM TIGR04134
putative lipoprotein, rSAM/lipoprotein system; Members of this family are Bacteroidetes ...
 7-154 5.29e-60

putative lipoprotein, rSAM/lipoprotein system; Members of this family are Bacteroidetes lineage putative lipoproteins that always occur in pairs with a radical SAM enzyme, TIGR04133, from a branch of the radical SAM superfamily in which many members perform peptide or protein modifications. In some members, the region distal to the Cys of the putative lipoprotein cleavage motif is duplicated.


Pssm-ID: 200385  Cd Length: 150  Bit Score: 182.97  E-value: 5.29e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492279200    7 QWLRYSNRALSGLLMLFGFVSCDNGGGDIPVEYGMPSAKYRVKGKVIDaDTQEPVPGIEVVTGAVHTGDGKEWLSYPDTL 86
Cdd:TIGR04134   1 KVLRLLNRLLSGFLGLLGFASCDEEGGEIPVEYGTPYAKYEVKGKVTD-EEGEPIEDIQVIVKRKYSGDDRSWVYLTDTV 79

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 492279200   87 ITDKDGAFATER-TEFPSKKYRFIVRDVDGDANGTYSKDSVEV--EAGGFTGGSHWYRGETSIDKTIEIKK 154
Cdd:TIGR04134  80 YTDANGEFQIENeVTFGFNKYRVIAEDIDGVKNGRYASDSVDVkmESDDFKGGSGWYEGSDKKEIDIKLKK 150
CarbopepD_reg_2 pfam13715
CarboxypepD_reg-like domain; This domain family is found in bacteria, archaea and eukaryotes, ...
 48-111 5.28e-03

CarboxypepD_reg-like domain; This domain family is found in bacteria, archaea and eukaryotes, and is approximately 90 amino acids in length. The family is found in association with pfam07715 and pfam00593.


Pssm-ID: 433425 [Multi-domain]  Cd Length: 88  Bit Score: 34.49  E-value: 5.28e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 492279200   48 VKGKVIDADTQEPVPGIEVVTGAVHTGDgkewlsypdtlITDKDGAFATERTefPSKKYRFIVR 111
Cdd:pfam13715   1 ISGTVVDENTGEPLPGATVYVKGTTKGT-----------VTDADGNFELKNL--PAGTYTLVVS 51
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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