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Conserved domains on  [gi|492272564|ref|WP_005795711|]
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BT1926 family outer membrane beta-barrel protein [Bacteroides fragilis]

Protein Classification

OmpW/AlkL family protein( domain architecture ID 11246544)

OmpW/AlkL family protein may form a channel for the diffusion of small hydrophobic molecules across the outer membrane; similar to outer membrane protein OmpW that forms an eight-stranded beta-barrel with a hydrophobic channel and also acts as a receptor for colicin S4

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
OmpA_like pfam16961
Putative OmpA-OmpF-like porin family; This is a family of putative OmpA-OmpF-like porins from ...
 59-257 6.85e-125

Putative OmpA-OmpF-like porin family; This is a family of putative OmpA-OmpF-like porins from Bacteroidetes.


:

Pssm-ID: 374905  Cd Length: 197  Bit Score: 353.00  E-value: 6.85e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492272564   59 YEVRALSTNWADKKLMVGFEGGWFFKDQWKLNLGGGVSFTNNPGYPAVPGTIDDsNKNNSADENMGEIPNYRAVADAQSF 138
Cdd:pfam16961   1 YSVSALSTNWNDKTLMVGFEGGWFFKDLWKLNLGGGGNITNTPGYPAVPGTIDD-SENSTPDDNMGSIPNYEAVADADSL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492272564  139 AYNVSAGVDRYFNIKrVPNLMWYTGIRVGFAYGENEMKYDEETSMGKSIAESWNLRGALTIGVDYFVLPALYISAQIDPF 218
Cdd:pfam16961  80 QYNVILGVDRYFKTK-VDGLYPYTGIRAGYAYGRNEMKYDDETSMGKSTGEAWNLRGALTAGVDYFITPAFYIGAQIDPF 158

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 492272564  219 AYTYNKTTYNPQAGLGDLSADSHNYSVLAAPTFKIGFKF 257
Cdd:pfam16961 159 AYTYNKTAYKPQEGLSMLDADSHNFSFLAAPTLKIGFKF 197
 
Name Accession Description Interval E-value
OmpA_like pfam16961
Putative OmpA-OmpF-like porin family; This is a family of putative OmpA-OmpF-like porins from ...
 59-257 6.85e-125

Putative OmpA-OmpF-like porin family; This is a family of putative OmpA-OmpF-like porins from Bacteroidetes.


Pssm-ID: 374905  Cd Length: 197  Bit Score: 353.00  E-value: 6.85e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492272564   59 YEVRALSTNWADKKLMVGFEGGWFFKDQWKLNLGGGVSFTNNPGYPAVPGTIDDsNKNNSADENMGEIPNYRAVADAQSF 138
Cdd:pfam16961   1 YSVSALSTNWNDKTLMVGFEGGWFFKDLWKLNLGGGGNITNTPGYPAVPGTIDD-SENSTPDDNMGSIPNYEAVADADSL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492272564  139 AYNVSAGVDRYFNIKrVPNLMWYTGIRVGFAYGENEMKYDEETSMGKSIAESWNLRGALTIGVDYFVLPALYISAQIDPF 218
Cdd:pfam16961  80 QYNVILGVDRYFKTK-VDGLYPYTGIRAGYAYGRNEMKYDDETSMGKSTGEAWNLRGALTAGVDYFITPAFYIGAQIDPF 158

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 492272564  219 AYTYNKTTYNPQAGLGDLSADSHNYSVLAAPTFKIGFKF 257
Cdd:pfam16961 159 AYTYNKTAYKPQEGLSMLDADSHNFSFLAAPTLKIGFKF 197
 
Name Accession Description Interval E-value
OmpA_like pfam16961
Putative OmpA-OmpF-like porin family; This is a family of putative OmpA-OmpF-like porins from ...
 59-257 6.85e-125

Putative OmpA-OmpF-like porin family; This is a family of putative OmpA-OmpF-like porins from Bacteroidetes.


Pssm-ID: 374905  Cd Length: 197  Bit Score: 353.00  E-value: 6.85e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492272564   59 YEVRALSTNWADKKLMVGFEGGWFFKDQWKLNLGGGVSFTNNPGYPAVPGTIDDsNKNNSADENMGEIPNYRAVADAQSF 138
Cdd:pfam16961   1 YSVSALSTNWNDKTLMVGFEGGWFFKDLWKLNLGGGGNITNTPGYPAVPGTIDD-SENSTPDDNMGSIPNYEAVADADSL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492272564  139 AYNVSAGVDRYFNIKrVPNLMWYTGIRVGFAYGENEMKYDEETSMGKSIAESWNLRGALTIGVDYFVLPALYISAQIDPF 218
Cdd:pfam16961  80 QYNVILGVDRYFKTK-VDGLYPYTGIRAGYAYGRNEMKYDDETSMGKSTGEAWNLRGALTAGVDYFITPAFYIGAQIDPF 158

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 492272564  219 AYTYNKTTYNPQAGLGDLSADSHNYSVLAAPTFKIGFKF 257
Cdd:pfam16961 159 AYTYNKTAYKPQEGLSMLDADSHNFSFLAAPTLKIGFKF 197
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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