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Conserved domains on  [gi|492228681|ref|WP_005782227|]
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MULTISPECIES: 30S ribosomal protein S4 [Bacteroides]

Protein Classification

30S ribosomal protein S4( domain architecture ID 11480735)

30S ribosomal protein S4 binds directly to 16S rRNA and plays an important role in translational accuracy

Gene Ontology:  GO:0003735|GO:0006412|GO:0019843

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rpsD PRK05327
30S ribosomal protein S4; Validated
 1-201 5.55e-122

30S ribosomal protein S4; Validated


:

Pssm-ID: 235411 [Multi-domain]  Cd Length: 203  Bit Score: 343.24  E-value: 5.55e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492228681   1 MARYTGPKSRIARKFGEGIFGADKVLSKKNYPPGQHGNSRKR-KTSEYGIQLREKQKAKYTYGVLEKQFRNLFEKAATAK 79
Cdd:PRK05327   1 MARYTGPKCKLSRRLGVDLFKSGKRCLKRKYPPGQHGQRRRKpKLSDYGLQLREKQKLRRIYGVLEKQFRRYFKEAARRK 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492228681  80 GITGEVLLQMLEGRLDNLVFRLGIAPTRAAARQLVSHRHITVDGQVVNIPSYAVKPGQLIGVRERSKSLEVIANSLAGFN 159
Cdd:PRK05327  81 GNTGENLLQLLESRLDNVVYRLGFAPTRRQARQLVSHGHILVNGKKVNIPSYRVKPGDVIEVREKSKKLPRIKEALELAE 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 492228681 160 HSK-YAWLEWDEASKVGKLLHIPERADIPENIKEHLIVELYSK 201
Cdd:PRK05327 161 RRGvPDWLEVDAEKLEGTFKRLPEREEIPVPINEQLIVELYSK 203
 
Name Accession Description Interval E-value
rpsD PRK05327
30S ribosomal protein S4; Validated
 1-201 5.55e-122

30S ribosomal protein S4; Validated


Pssm-ID: 235411 [Multi-domain]  Cd Length: 203  Bit Score: 343.24  E-value: 5.55e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492228681   1 MARYTGPKSRIARKFGEGIFGADKVLSKKNYPPGQHGNSRKR-KTSEYGIQLREKQKAKYTYGVLEKQFRNLFEKAATAK 79
Cdd:PRK05327   1 MARYTGPKCKLSRRLGVDLFKSGKRCLKRKYPPGQHGQRRRKpKLSDYGLQLREKQKLRRIYGVLEKQFRRYFKEAARRK 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492228681  80 GITGEVLLQMLEGRLDNLVFRLGIAPTRAAARQLVSHRHITVDGQVVNIPSYAVKPGQLIGVRERSKSLEVIANSLAGFN 159
Cdd:PRK05327  81 GNTGENLLQLLESRLDNVVYRLGFAPTRRQARQLVSHGHILVNGKKVNIPSYRVKPGDVIEVREKSKKLPRIKEALELAE 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 492228681 160 HSK-YAWLEWDEASKVGKLLHIPERADIPENIKEHLIVELYSK 201
Cdd:PRK05327 161 RRGvPDWLEVDAEKLEGTFKRLPEREEIPVPINEQLIVELYSK 203
RpsD COG0522
Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; ...
 1-201 1.13e-121

Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein S4 or related protein is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440288 [Multi-domain]  Cd Length: 204  Bit Score: 342.44  E-value: 1.13e-121
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492228681   1 MARYTGPKSRIARKFGEGIFG---ADKVLSKKNYPPGQHGNSRKrKTSEYGIQLREKQKAKYTYGVLEKQFRNLFEKAAT 77
Cdd:COG0522    1 MARYTGPKCKLCRREGVKLFLkgeRKCALERRPYPPGQHGQRRK-KLSDYGLQLREKQKLRRIYGVLEKQFRRYFEEAAR 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492228681  78 AKGITGEVLLQMLEGRLDNLVFRLGIAPTRAAARQLVSHRHITVDGQVVNIPSYAVKPGQLIGVRERSKSLEVIANSLAG 157
Cdd:COG0522   80 RKGNTGENLLQLLERRLDNVVYRLGFAPTRAQARQLVSHGHILVNGKKVNIPSYQVKPGDVIEVREKSKKLPRIKEALES 159

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 492228681 158 FNH-SKYAWLEWDEASKVGKLLHIPERADIPENIKEHLIVELYSK 201
Cdd:COG0522  160 AEQrGVPEWLEVDAEKLSGTVVRLPEREEIPVPINEQLIVELYSR 204
rpsD_bact TIGR01017
ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and ...
 3-201 2.17e-89

ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 200066 [Multi-domain]  Cd Length: 200  Bit Score: 260.70  E-value: 2.17e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492228681    3 RYTGPKSRIARKFGEGIFG-ADKVLSKKNYPPGQHGNsRKRKTSEYGIQLREKQKAKYTYGVLEKQFRNLFEKAATAKGI 81
Cdd:TIGR01017   1 RYTGPKFKLSRRLGVNLFGkSRKLLLKRKYPPGQHGQ-RRKKLSDYGLQLQEKQKLKFMYGITEKQFRKYFKEAKKLKGN 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492228681   82 TGEVLLQMLEGRLDNLVFRLGIAPTRAAARQLVSHRHITVDGQVVNIPSYAVKPGQLIGVRERSKSLEVIANSLA-GFNH 160
Cdd:TIGR01017  80 TGENLLRLLESRLDNVVYRLGFAPTRFAARQLVSHGHILVNGKKVDIPSYQVRPGDIISIKEKSKKIPLVKENLEtNGQR 159

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 492228681  161 SKYAWLEWDEASKVGKLLHIPERADIPENIKEHLIVELYSK 201
Cdd:TIGR01017 160 NIPSWLEVDKKTLEGKVLRVPERSQLPLPINESLVVEYYSR 200
Ribosomal_S4 pfam00163
Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 ...
 3-91 5.80e-34

Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 from prokaryotes and S16 from metazoans. This domain is predicted to bind to ribosomal RNA. This domain is composed of four helices in the known structure. However the domain is discontinuous in sequence and the alignment for this family contains only the first three helices.


Pssm-ID: 459696  Cd Length: 96  Bit Score: 116.11  E-value: 5.80e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492228681    3 RYTGPKSRIARKFGEGIFGADK-------VLSKKNYP--PGQHGnsRKRKTSEYGIQLREKQKAKYTYGVLEKQFRNLFE 73
Cdd:pfam00163   1 RYKGPEQKLLRRVGFKLWKKGRchrelkvAQNRREYPkyPGQHG--KIRKLSEYLLQLREKQKVRRKYGLLEKQLRKLYD 78

                          90
                  ....*....|....*...
gi 492228681   74 KAATAKGITGEVLLQMLE 91
Cdd:pfam00163  79 MGLKLKGVTGENLLQLLE 96
S4 cd00165
S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, ...
 93-151 1.29e-17

S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.


Pssm-ID: 238095 [Multi-domain]  Cd Length: 70  Bit Score: 73.44  E-value: 1.29e-17
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 492228681  93 RLDNLVFRLGIAPTRAAARQLVSHRHITVDGQVVNIPSYAVKPGQLIGVRERSKSLEVI 151
Cdd:cd00165    2 RLDKILARLGLAPSRSEARQLIKHGHVLVNGKVVTKPSYKVKPGDVIEVDGKSIEEDIV 60
S4 smart00363
S4 RNA-binding domain;
93-147 2.09e-14

S4 RNA-binding domain;


Pssm-ID: 214638 [Multi-domain]  Cd Length: 60  Bit Score: 64.92  E-value: 2.09e-14
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 492228681    93 RLDNLVFRLGIAPTRAAARQLVSHRHITVDGQVVNIPSYAVKPGQLIGVRERSKS 147
Cdd:smart00363   2 RLDKFLARLGLAPSRSQARRLIEQGRVKVNGKKVTKPSYIVKPGDVISVRGKELK 56
 
Name Accession Description Interval E-value
rpsD PRK05327
30S ribosomal protein S4; Validated
 1-201 5.55e-122

30S ribosomal protein S4; Validated


Pssm-ID: 235411 [Multi-domain]  Cd Length: 203  Bit Score: 343.24  E-value: 5.55e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492228681   1 MARYTGPKSRIARKFGEGIFGADKVLSKKNYPPGQHGNSRKR-KTSEYGIQLREKQKAKYTYGVLEKQFRNLFEKAATAK 79
Cdd:PRK05327   1 MARYTGPKCKLSRRLGVDLFKSGKRCLKRKYPPGQHGQRRRKpKLSDYGLQLREKQKLRRIYGVLEKQFRRYFKEAARRK 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492228681  80 GITGEVLLQMLEGRLDNLVFRLGIAPTRAAARQLVSHRHITVDGQVVNIPSYAVKPGQLIGVRERSKSLEVIANSLAGFN 159
Cdd:PRK05327  81 GNTGENLLQLLESRLDNVVYRLGFAPTRRQARQLVSHGHILVNGKKVNIPSYRVKPGDVIEVREKSKKLPRIKEALELAE 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 492228681 160 HSK-YAWLEWDEASKVGKLLHIPERADIPENIKEHLIVELYSK 201
Cdd:PRK05327 161 RRGvPDWLEVDAEKLEGTFKRLPEREEIPVPINEQLIVELYSK 203
RpsD COG0522
Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; ...
 1-201 1.13e-121

Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein S4 or related protein is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440288 [Multi-domain]  Cd Length: 204  Bit Score: 342.44  E-value: 1.13e-121
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492228681   1 MARYTGPKSRIARKFGEGIFG---ADKVLSKKNYPPGQHGNSRKrKTSEYGIQLREKQKAKYTYGVLEKQFRNLFEKAAT 77
Cdd:COG0522    1 MARYTGPKCKLCRREGVKLFLkgeRKCALERRPYPPGQHGQRRK-KLSDYGLQLREKQKLRRIYGVLEKQFRRYFEEAAR 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492228681  78 AKGITGEVLLQMLEGRLDNLVFRLGIAPTRAAARQLVSHRHITVDGQVVNIPSYAVKPGQLIGVRERSKSLEVIANSLAG 157
Cdd:COG0522   80 RKGNTGENLLQLLERRLDNVVYRLGFAPTRAQARQLVSHGHILVNGKKVNIPSYQVKPGDVIEVREKSKKLPRIKEALES 159

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 492228681 158 FNH-SKYAWLEWDEASKVGKLLHIPERADIPENIKEHLIVELYSK 201
Cdd:COG0522  160 AEQrGVPEWLEVDAEKLSGTVVRLPEREEIPVPINEQLIVELYSR 204
rpsD_bact TIGR01017
ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and ...
 3-201 2.17e-89

ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 200066 [Multi-domain]  Cd Length: 200  Bit Score: 260.70  E-value: 2.17e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492228681    3 RYTGPKSRIARKFGEGIFG-ADKVLSKKNYPPGQHGNsRKRKTSEYGIQLREKQKAKYTYGVLEKQFRNLFEKAATAKGI 81
Cdd:TIGR01017   1 RYTGPKFKLSRRLGVNLFGkSRKLLLKRKYPPGQHGQ-RRKKLSDYGLQLQEKQKLKFMYGITEKQFRKYFKEAKKLKGN 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492228681   82 TGEVLLQMLEGRLDNLVFRLGIAPTRAAARQLVSHRHITVDGQVVNIPSYAVKPGQLIGVRERSKSLEVIANSLA-GFNH 160
Cdd:TIGR01017  80 TGENLLRLLESRLDNVVYRLGFAPTRFAARQLVSHGHILVNGKKVDIPSYQVRPGDIISIKEKSKKIPLVKENLEtNGQR 159

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 492228681  161 SKYAWLEWDEASKVGKLLHIPERADIPENIKEHLIVELYSK 201
Cdd:TIGR01017 160 NIPSWLEVDKKTLEGKVLRVPERSQLPLPINESLVVEYYSR 200
rps4 CHL00113
ribosomal protein S4; Reviewed
 1-200 5.47e-71

ribosomal protein S4; Reviewed


Pssm-ID: 177038 [Multi-domain]  Cd Length: 201  Bit Score: 213.92  E-value: 5.47e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492228681   1 MARYTGPKSRIARKFGE--GifgadkvLSKKNYPPGQHG--NSRKRKTSEYGIQLREKQKAKYTYGVLEKQFRNLFEKAA 76
Cdd:CHL00113   1 MSRYRGPRLKIIRRLGAlpG-------LTSKTPRPGSDLrnQSRSGKKSQYRIRLEEKQKLRFNYGLTERQLLKYVRIAR 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492228681  77 TAKGITGEVLLQMLEGRLDNLVFRLGIAPTRAAARQLVSHRHITVDGQVVNIPSYAVKPGQLIGVRERSKSLEVIANSLA 156
Cdd:CHL00113  74 KAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPAARQLVNHGHILVNGRIVDIPSYRCKPKDIITVKDKQKSKNLIQNNLE 153

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 492228681 157 GFNHSK-YAWLEWDEASKVGKLLHIPERADIPENIKEHLIVELYS 200
Cdd:CHL00113 154 SSPREElPNHLTLDKLQYKGLVNQIIDRKWVGLKINELLVVEYYS 198
Ribosomal_S4 pfam00163
Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 ...
 3-91 5.80e-34

Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 from prokaryotes and S16 from metazoans. This domain is predicted to bind to ribosomal RNA. This domain is composed of four helices in the known structure. However the domain is discontinuous in sequence and the alignment for this family contains only the first three helices.


Pssm-ID: 459696  Cd Length: 96  Bit Score: 116.11  E-value: 5.80e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492228681    3 RYTGPKSRIARKFGEGIFGADK-------VLSKKNYP--PGQHGnsRKRKTSEYGIQLREKQKAKYTYGVLEKQFRNLFE 73
Cdd:pfam00163   1 RYKGPEQKLLRRVGFKLWKKGRchrelkvAQNRREYPkyPGQHG--KIRKLSEYLLQLREKQKVRRKYGLLEKQLRKLYD 78

                          90
                  ....*....|....*...
gi 492228681   74 KAATAKGITGEVLLQMLE 91
Cdd:pfam00163  79 MGLKLKGVTGENLLQLLE 96
S4 cd00165
S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, ...
 93-151 1.29e-17

S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.


Pssm-ID: 238095 [Multi-domain]  Cd Length: 70  Bit Score: 73.44  E-value: 1.29e-17
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 492228681  93 RLDNLVFRLGIAPTRAAARQLVSHRHITVDGQVVNIPSYAVKPGQLIGVRERSKSLEVI 151
Cdd:cd00165    2 RLDKILARLGLAPSRSEARQLIKHGHVLVNGKVVTKPSYKVKPGDVIEVDGKSIEEDIV 60
S4 pfam01479
S4 domain; The S4 domain is a small domain consisting of 60-65 amino acid residues that was ...
 93-139 4.49e-16

S4 domain; The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation. The S4 domain probably mediates binding to RNA.


Pssm-ID: 396182 [Multi-domain]  Cd Length: 48  Bit Score: 68.67  E-value: 4.49e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 492228681   93 RLDNLVFRLGIAPTRAAARQLVSHRHITVDGQVVNIPSYAVKPGQLI 139
Cdd:pfam01479   2 RLDKVLARLGLASSRSQARQLIEHGRVLVNGKVVKDPSYRVKPGDEI 48
S4 smart00363
S4 RNA-binding domain;
93-147 2.09e-14

S4 RNA-binding domain;


Pssm-ID: 214638 [Multi-domain]  Cd Length: 60  Bit Score: 64.92  E-value: 2.09e-14
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 492228681    93 RLDNLVFRLGIAPTRAAARQLVSHRHITVDGQVVNIPSYAVKPGQLIGVRERSKS 147
Cdd:smart00363   2 RLDKFLARLGLAPSRSQARRLIEQGRVKVNGKKVTKPSYIVKPGDVISVRGKELK 56
uS4_arch TIGR01018
ribosomal protein uS4, eukaryotic/archaeal type; This model finds eukaryotic ribosomal protein ...
 39-134 2.56e-12

ribosomal protein uS4, eukaryotic/archaeal type; This model finds eukaryotic ribosomal protein S9 as well as archaeal ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273397 [Multi-domain]  Cd Length: 162  Bit Score: 62.06  E-value: 2.56e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492228681   39 SRKRKTSEYGIQLREKQKAKYTYGVLEKQFRN--LFEKAATAKGITGEVLLQMLEGRLDNLVFRLGIAPTRAAARQLVSH 116
Cdd:TIGR01018  49 RKYRRAARELLTLDDEQRLFEGNQLLRRLVRLgiLDEENAKLDDVLGLTVEDFLERRLQTQVYKKGLARTIHQARQLIVH 128

                          90
                  ....*....|....*...
gi 492228681  117 RHITVDGQVVNIPSYAVK 134
Cdd:TIGR01018 129 GHIAVNGRVVTSPSYIVR 146
rps4p PRK04051
30S ribosomal protein S4P; Validated
 90-134 1.43e-11

30S ribosomal protein S4P; Validated


Pssm-ID: 179730 [Multi-domain]  Cd Length: 177  Bit Score: 60.27  E-value: 1.43e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 492228681  90 LEGRLDNLVFRLGIAPTRAAARQLVSHRHITVDGQVVNIPSYAVK 134
Cdd:PRK04051 101 LERRLQTIVYRKGLARTPKQARQFIVHGHIAVNGRRVTSPSYLVS 145
PTZ00155 PTZ00155
40S ribosomal protein S9; Provisional
 46-134 4.40e-09

40S ribosomal protein S9; Provisional


Pssm-ID: 185484 [Multi-domain]  Cd Length: 181  Bit Score: 53.54  E-value: 4.40e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492228681  46 EYGIQ-LREKQKAKYTYGVL-----------EKQFRNLFEKAATAK-----GITGE-------VL----LQMLEGRLDNL 97
Cdd:PTZ00155  33 EYGLKnKREIWRVQYTLAKIrkaarelltldEKDPKRLFEGEALLRrmhrlGLLDEderkldyVLgltvEKLLERRLQTK 112

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 492228681  98 VFRLGIAPTRAAARQLVSHRHITVDGQVVNIPSYAVK 134
Cdd:PTZ00155 113 VFKLGLAKSIHHARVLIRQRHIRVGKQIVDIPSFLVR 149
PLN00189 PLN00189
40S ribosomal protein S9; Provisional
 90-134 7.46e-09

40S ribosomal protein S9; Provisional


Pssm-ID: 177783 [Multi-domain]  Cd Length: 194  Bit Score: 53.21  E-value: 7.46e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 492228681  90 LEGRLDNLVFRLGIAPTRAAARQLVSHRHITVDGQVVNIPSYAVK 134
Cdd:PLN00189 107 LERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGKQIVNVPSFMVR 151
TyrS COG0162
Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Tyrosyl-tRNA ...
 65-139 2.45e-03

Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Tyrosyl-tRNA synthetase is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases


Pssm-ID: 439932 [Multi-domain]  Cd Length: 409  Bit Score: 38.09  E-value: 2.45e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 492228681  65 EKQFRNLFEKAATAKGITgEVLLQMLEGRLD--NLVFRLGIAPTRAAARQLVSHRHITVDGQVVNIPSYAVKPGQLI 139
Cdd:COG0162  314 EEAFEALFGKGELPDDLP-EVELSAAEGGIPlvDLLVEAGLAASKSEARRLIKQGGVSVNGEKVTDPDAVLTAGDLL 389
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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