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Conserved domains on  [gi|491996357|ref|WP_005712808|]
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transposase [Lacticaseibacillus rhamnosus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DDE_Tnp_1_4 super family cl20495
Transposase DDE domain group 1; Transposase proteins are necessary for efficient DNA ...
 1-127 5.06e-21

Transposase DDE domain group 1; Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.


The actual alignment was detected with superfamily member pfam13701:

Pssm-ID: 433414  Cd Length: 433  Bit Score: 86.88  E-value: 5.06e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491996357    1 MNQTILATNMTENPTTVLFPAYQGRGNVENDIKKLKCGFGFDQTGSSTLIRNTVRALTSGVTYNLIQLFNQVLIPEDP-- 78
Cdd:pfam13701 303 LNPRFVVTNLAQLSPETLYQLYCARGRMENRIKEAKLGLFADRTSCHRFLANQVRLALSALAYNLMNWLRTLALPGTEla 382

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 491996357   79 RITINALRLQLFHIVELVIRLAGKVILHPASNYTSRNWFWNLLGRIKQL 127
Cdd:pfam13701 383 TAQIDTIRLRLLKIAARVVRSARRIRLHLASSCPYQDLFRDALARLQRL 431
 
Name Accession Description Interval E-value
DDE_Tnp_1_4 pfam13701
Transposase DDE domain group 1; Transposase proteins are necessary for efficient DNA ...
 1-127 5.06e-21

Transposase DDE domain group 1; Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.


Pssm-ID: 433414  Cd Length: 433  Bit Score: 86.88  E-value: 5.06e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491996357    1 MNQTILATNMTENPTTVLFPAYQGRGNVENDIKKLKCGFGFDQTGSSTLIRNTVRALTSGVTYNLIQLFNQVLIPEDP-- 78
Cdd:pfam13701 303 LNPRFVVTNLAQLSPETLYQLYCARGRMENRIKEAKLGLFADRTSCHRFLANQVRLALSALAYNLMNWLRTLALPGTEla 382

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 491996357   79 RITINALRLQLFHIVELVIRLAGKVILHPASNYTSRNWFWNLLGRIKQL 127
Cdd:pfam13701 383 TAQIDTIRLRLLKIAARVVRSARRIRLHLASSCPYQDLFRDALARLQRL 431
transpos_IS1380 NF033539
IS1380 family transposase; Proteins of this family are DDE type transposases, which are ...
 22-111 7.52e-14

IS1380 family transposase; Proteins of this family are DDE type transposases, which are encoded by IS1380 family elements. It was first identified and characterized in an Acetobacter pasteurianus mutant with ethanol oxidation deficiency caused by disruption of the cytochrome c gene by the IS1380 element.


Pssm-ID: 468070 [Multi-domain]  Cd Length: 417  Bit Score: 66.48  E-value: 7.52e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491996357  22 YQGRGNVENDIKKLKCGFGFDQTGSSTLIRNTVRALTSGVTYNLIQLFNQVLIPEDP--RITINALRLQLFHIVELVIRL 99
Cdd:NF033539 326 YRARGTSENRIKELKNGLGLDRLPSGKFAANQLRLLLAALAYNLLRWLRQLALPGTElaRARIKTIRLKLIKVAARLVRH 405

                         90
                 ....*....|..
gi 491996357 100 AGKVILHPASNY 111
Cdd:NF033539 406 ARRIVLKLPSSC 417
 
Name Accession Description Interval E-value
DDE_Tnp_1_4 pfam13701
Transposase DDE domain group 1; Transposase proteins are necessary for efficient DNA ...
 1-127 5.06e-21

Transposase DDE domain group 1; Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.


Pssm-ID: 433414  Cd Length: 433  Bit Score: 86.88  E-value: 5.06e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491996357    1 MNQTILATNMTENPTTVLFPAYQGRGNVENDIKKLKCGFGFDQTGSSTLIRNTVRALTSGVTYNLIQLFNQVLIPEDP-- 78
Cdd:pfam13701 303 LNPRFVVTNLAQLSPETLYQLYCARGRMENRIKEAKLGLFADRTSCHRFLANQVRLALSALAYNLMNWLRTLALPGTEla 382

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 491996357   79 RITINALRLQLFHIVELVIRLAGKVILHPASNYTSRNWFWNLLGRIKQL 127
Cdd:pfam13701 383 TAQIDTIRLRLLKIAARVVRSARRIRLHLASSCPYQDLFRDALARLQRL 431
transpos_IS1380 NF033539
IS1380 family transposase; Proteins of this family are DDE type transposases, which are ...
 22-111 7.52e-14

IS1380 family transposase; Proteins of this family are DDE type transposases, which are encoded by IS1380 family elements. It was first identified and characterized in an Acetobacter pasteurianus mutant with ethanol oxidation deficiency caused by disruption of the cytochrome c gene by the IS1380 element.


Pssm-ID: 468070 [Multi-domain]  Cd Length: 417  Bit Score: 66.48  E-value: 7.52e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491996357  22 YQGRGNVENDIKKLKCGFGFDQTGSSTLIRNTVRALTSGVTYNLIQLFNQVLIPEDP--RITINALRLQLFHIVELVIRL 99
Cdd:NF033539 326 YRARGTSENRIKELKNGLGLDRLPSGKFAANQLRLLLAALAYNLLRWLRQLALPGTElaRARIKTIRLKLIKVAARLVRH 405

                         90
                 ....*....|..
gi 491996357 100 AGKVILHPASNY 111
Cdd:NF033539 406 ARRIVLKLPSSC 417
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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