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Conserved domains on  [gi|491955020|ref|WP_005689699|]
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DUF3042 family protein [Lacticaseibacillus rhamnosus]

Protein Classification

DUF3042 family protein( domain architecture ID 10567924)

DUF3042 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3042 pfam11240
Protein of unknown function (DUF3042); This family of proteins with unknown function appears ...
 2-55 3.00e-17

Protein of unknown function (DUF3042); This family of proteins with unknown function appears to be restricted to Firmicutes.


:

Pssm-ID: 463245  Cd Length: 54  Bit Score: 67.32  E-value: 3.00e-17
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 491955020   2 KHKFARGFFVGTLMTIGAVAGSVFAFKKNYIEPVETKVDEINENRRKANRKRFS 55
Cdd:pfam11240  1 MKKFGKGFLTGVAATIAALAGAVFTFKKTVIEPIEEKEAKIEENRKRAARKRRS 54
 
Name Accession Description Interval E-value
DUF3042 pfam11240
Protein of unknown function (DUF3042); This family of proteins with unknown function appears ...
 2-55 3.00e-17

Protein of unknown function (DUF3042); This family of proteins with unknown function appears to be restricted to Firmicutes.


Pssm-ID: 463245  Cd Length: 54  Bit Score: 67.32  E-value: 3.00e-17
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 491955020   2 KHKFARGFFVGTLMTIGAVAGSVFAFKKNYIEPVETKVDEINENRRKANRKRFS 55
Cdd:pfam11240  1 MKKFGKGFLTGVAATIAALAGAVFTFKKTVIEPIEEKEAKIEENRKRAARKRRS 54
 
Name Accession Description Interval E-value
DUF3042 pfam11240
Protein of unknown function (DUF3042); This family of proteins with unknown function appears ...
 2-55 3.00e-17

Protein of unknown function (DUF3042); This family of proteins with unknown function appears to be restricted to Firmicutes.


Pssm-ID: 463245  Cd Length: 54  Bit Score: 67.32  E-value: 3.00e-17
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 491955020   2 KHKFARGFFVGTLMTIGAVAGSVFAFKKNYIEPVETKVDEINENRRKANRKRFS 55
Cdd:pfam11240  1 MKKFGKGFLTGVAATIAALAGAVFTFKKTVIEPIEEKEAKIEENRKRAARKRRS 54
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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