|
Name |
Accession |
Description |
Interval |
E-value |
| PTS-II-ABC-beta |
TIGR01995 |
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS ... |
5-611 |
0e+00 |
|
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Pssm-ID: 273919 [Multi-domain] Cd Length: 610 Bit Score: 618.60 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 5 ALAKQLLKLVGGKQNINQVWHCATRLRFTLKDQDKVPKEKVEALDGVITVVEASGQFQVVIGNNVSDVYQEVVKLepsls 84
Cdd:TIGR01995 3 DLAKAIIENVGGKENIESVTHCATRLRFTLKDDAKADTEKLKKISGVITVVKSGGQYQVVIGNDVNDVYQALMDV----- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 85 dGTEGPATVTHEKMTFKRAFNGLLTFISGVFTPFLGAMAGAGILKGLLSLAVVLGWLTTKSGAYQIWWAAADGIFYFLPL 164
Cdd:TIGR01995 78 -LGLDDQAEDDDSKGKKSILNKLIDLISGVFTPLLPALAGAGLLKAVLTLLTMTGLISADSQTYQILNAMGDAVFYFLPI 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 165 ALAFTAAKQLKVNQFVAMAIAAAMVYPNIVALVGKPS-IDFLGIPVVAANYTATVLPILLVVVVQKFLEPFFNRIWHESV 243
Cdd:TIGR01995 157 LLAITAAKRFKVNPYLAAAIGAALLHPTLVAMVGSGKpVTFFGIPVTLMSYSSSVIPVILAVWLMSYVEKFLKKVIPGAL 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 244 RNILAPLCLLVVIVPLTMLVVGPVSSILSNGLATAIVSLNKSVPVLAGMILGGFWQVFVIFGVHWALVPVMMNNIALYGT 323
Cdd:TIGR01995 237 KNFLTPLLVMLITVPLTLLIIGPLGNYAGEGISSGILFLYEVSPWLAGALLAALWPVLVMFGLHWAMIPIVINNIATQGF 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 324 DPMM-PILLPAVLAQAGAAFAVFLKARDAKMKSLAGSSTITALFGITEPTIYGITLKLKKPFYCACVAGAVGGIIVAMSG 402
Cdd:TIGR01995 317 DPLIlPASLAANFAQGGAALAVMLRTKNKKLKALAGSATISALFGITEPAIYGVNLPLKKPFYAAMIGGAVGGAIIGIGS 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 403 AGANVAALASILSLPTYLGKG----FGVSVIGDVVAFVLGVGLTLaFGGINAPAKNQAATAVVADHAETLAAPVKGTLVA 478
Cdd:TIGR01995 397 VKAFTAFAPGLLGLPMFINPSdganFISALIAIVISFVVSFVLTY-FIGFKDQEDVVTQEAAALSKDESLYAPVAGEMLP 475
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 479 LSDVPDEVFASGTMGQGIAIEPEENVVKSPVAGTVSLVYPTGHAIGITSDKGAEILIHIGIDTVNLKGKHFKALIEQGQK 558
Cdd:TIGR01995 476 LNEVPDEVFSSGAMGKGIAILPTEGEVVAPVDGTVTAVFPTKHAIGIRSDNGIEILIHVGIDTVELNGEGFEILVKVGDH 555
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 491944983 559 VTVGTPLVEFDYQAIQAAGYAPTVMMIVTNSDQYQ--VETRSDGATDDDALMTLA 611
Cdd:TIGR01995 556 VKAGQLLLTFDLDKIKEAGYDPTTPVVVTNTKDFLdvIPTDKETVTAGDVLLRLI 610
|
|
| PRK09824 |
PRK09824 |
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional |
1-610 |
0e+00 |
|
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Pssm-ID: 236627 [Multi-domain] Cd Length: 627 Bit Score: 576.66 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 1 MGETALAKQLLKLVGGKQNINQVWHCATRLRFTLKDQDKVPKEKVEALDGVITVVEASGQFQVVIGNNVSDVYQEVVKlE 80
Cdd:PRK09824 1 MEYTELAREIVAGVGGADNIVSLMHCATRLRFKLKDNSKAQAEVLKKNPGVIMVVESGGQFQVVIGNHVADVFLAVNS-V 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 81 PSLSDGTEgPATVTHEKMTFkraFNGLLTFISGVFTPFLGAMAGAGILKGLLSLAVVLGWLTTKSGAYQIWWAAADGIFY 160
Cdd:PRK09824 80 AGLGEKAQ-QAPENDKKGNL---LNRFIDVISGIFTPLIGVMAATGILKGMLALALTFGWTTEQSGTYKILFAASDALFF 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 161 FLPLALAFTAAKQLKVNQFVAMAIAAAMVYPNIVA------LVGKPSIDFLGIPVVAANYTATVLPILLVVVVQKFLEPF 234
Cdd:PRK09824 156 FFPIILGYTAGKKFGGNPFTAMVIGGALVHPLMIAafeagqKADALGLDFLGIPVTLLNYSSSVIPIIFSAWLCSILERR 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 235 FNRIWHESVRNILAPLCLLVVIVPLTMLVVGPVSSILSNGLATAIVSLNKSVPVLAGMILGGFWQVFVIFGVHWALVPVM 314
Cdd:PRK09824 236 LNAWLPSAIKNFFTPLLCLMVIVPLTFLLIGPLATWLSELLAAGYQWLYQAVPAFAGAVMGAFWQVFVIFGLHWGLVPLM 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 315 MNNIALYGTDPMMPILLPAVLAQAGAAFAVFLKARDAKMKSLAGSSTITALFGITEPTIYGITLKLKKPFYCACVAGAVG 394
Cdd:PRK09824 316 INNLTVLGHDTMLPLLMPAVMAQVGAALGVFLCTRDAQKKVVAGSAFLAGLFGITEPAVYGVNLPLKRPFIFGCISGALG 395
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 395 GIIVAMSGAGANVAALASILSL-----PTYLGKGFGVSVIGDVVAFVLGVGLTLAFG--------GINAPAKNQAATAVV 461
Cdd:PRK09824 396 AAIIGYAQTKVYSFGLPSIFTFmqtipPTGIDFTVWASVIGTVIAIGCAFVGTVMFGfptakrqpAQVAPQEKTPEVITP 475
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 462 ADhAETLAAPVKGTLVALSDVPDEVFASGTMGQGIAIEPEENVVKSPVAGTVSLVYPTGHAIGITSDKGAEILIHIGIDT 541
Cdd:PRK09824 476 PE-QGGICSPMTGEVVPLEQVADTTFASGLLGKGIAILPSVGEVRSPVAGRVASLFATLHAIGLESDDGVEVLIHVGIDT 554
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 491944983 542 VNLKGKHFKALIEQGQKVTVGTPLVEFDYQAIQAAGYAPTVMMIVTNSDQYQ-VETRSDGATD-DDALMTL 610
Cdd:PRK09824 555 VKLDGKFFTAHVNVGDKVNTGDLLIEFDIPAIREAGYDLTTPVLISNSDDYTdVLPHATAQVSaGEPLLSI 625
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
97-549 |
1.81e-94 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 297.62 E-value: 1.81e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 97 KMTFKRAFNGLLTFISGVFTPFLGAMAGAGILKGLLSLAVVLGWL---TTKSGAYQIWWAAADGIFYFLPLALAFTAAKQ 173
Cdd:COG1263 1 AKKKKNPLFRFLQKIGGIFMPPIPVLPAAGLLLGLGALLTNPGLLgegSFLSGTYQILNAAGDAVFYFLPLLFAIGAAKG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 174 LKVNQFVAMAIAAAMVYPNIVALVGKPS--IDFLGIPVVAaNYTATVLPILLVVVVQKFLEPFFNRIWHESVRNILAPLC 251
Cdd:COG1263 81 FGGNPALAAVIGYLLVHPTLLNAYAVAGgyISFLGIPTLI-GYQGGVFPGILAGWLAAYLEKFLKKKLPDALGFFFVPIL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 252 LLVVIVPLTMLVVGPVSSILSNGLATAIVSLNKSVPVLAGMILGGFWQVFVIFGVHWALVPVMMNNIALYGTDPMMPILL 331
Cdd:COG1263 160 TLLIMVPLALLVIGPIWPPIGNGIAAGLGWIYGLAGAIGGFIYGFLYRLLVPTGLHHGLNPIFWFLLGGTGDDGLFPILA 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 332 PAVLAQAGAAFAVFLKAR-DAKMKSLAGSSTITALF-GITEPTIYGITLKLKKPFYCACVAGAVGGIIVAMSGAGANVAA 409
Cdd:COG1263 240 AAMFGQPGAALAVYLKAKpNKKVKGLAISAALTAFLtGITEPAEFGFNLVAPKLFIAHAIGGGLGGAIAGLLGVKAFSFG 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 410 LASILSLPTYLGKG---FGVSVIGDVVAFVLGVGLTLAFG-GINAPAKNQAATAVVADHAETLAAPVKGTLVALSDVPDE 485
Cdd:COG1263 320 VGGLIDFPSILNPGatnLLLYLIGLVIAFVYYFVFTFLIGrEDEEEEEKLATKADAKKEEAEAAAAALGGGGGLLLLEAD 399
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 491944983 486 VFASGTMGQGIAIEPEENVVKSPVAGTVSLVYPTGHAIGITSDKGAEILIHIGIDTVNLKGKHF 549
Cdd:COG1263 400 ITVLLLTLVDVVIVVVKDVVKLAAAGAVVVGVGGVGAVGGVGGGGVVIVIVIIILVVVLEGLGE 463
|
|
| PTS-II-BC-sucr |
TIGR01996 |
PTS system, sucrose-specific IIBC component; This model represents the fused enzyme II B and C ... |
6-445 |
1.00e-75 |
|
PTS system, sucrose-specific IIBC component; This model represents the fused enzyme II B and C components of the sucrose-specific PTS sugar transporter system. Sucrose is converted to sucrose-6-phosphate in the process of translocation into the cell. Some of these transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci, Streptococci, Lactococci, Lactobacilli, etc. which contain their own A domain as a C-terminal fusion. This family is closely related to the trehalose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively).
Pssm-ID: 131051 Cd Length: 461 Bit Score: 248.75 E-value: 1.00e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 6 LAKQLLKLVGGKQNINQVWHCATRLRFTLKDQDKVPKEKVEALDGVITVVEASGQFQVVIGNN-VSDVYQEVVKL----E 80
Cdd:TIGR01996 5 VAKEILELLGGKDNIVSVAHCATRLRLVLKDESKIDKKAIENLDGVKGTFFNSGQYQIIIGTGvVNKVYDEIVKLtglsE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 81 PSLSDGTEGPAtvthEKMTFKRAFNGLLtfiSGVFTPFLGAMAGAGILKGLLSLAVVLGWLTTK--------SGAYQIWW 152
Cdd:TIGR01996 85 SSTSEQKAEAA----KKMNPFQRFARTL---SDIFVPIIPAIVATGLLMGLNGMLTAFGLFGLSgvsvapipEGLAEMIN 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 153 AAADGIFYFLPLALAFTAAKQLKVNQFVAMAIAAAMVYPNIV-------ALVGKPSIDFLGIPVVAANYTATVLPILLVV 225
Cdd:TIGR01996 158 VFTSTAFAFLPILIGFSAAKRFGGNPYLGAVIGLIMVHPSLPnaygvaaGTATGKAWNIFGLHIPVVGYQGTVLPVLVAV 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 226 VVQKFLEPFFNRIWHESVRNILAPLCLLVVIVPLTMLVVGPVSSILSNGLATAIVSLNKSVPVLAGMILGGFWQVFVIFG 305
Cdd:TIGR01996 238 WILAKIEKFLRKVVPNALDLLLTPFLTLLITGFLTLLVIGPIGRWVGDVLTDGLQWLYDLPGGLGGLLFGGLYSLIVITG 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 306 VHWALVPV---MMNNIALyGTDPMMPILLPAVLAQAGAAFAVFLKARDAKMKSLAGSSTITALFGITEPTIYGITLKLKK 382
Cdd:TIGR01996 318 IHHSFHAIetqLLANTKT-GGNFLFPIASMANVAQGGAALAVFFKTKDKKLKGLAIPSGLSALLGITEPAIFGVNLRYRK 396
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 491944983 383 PFYCACVAGAVGGIIVAMSGAGANVAALASILSLPTYL--GKGFGVSVIGDVVAFVLGVGLTLAF 445
Cdd:TIGR01996 397 PFIAALIGGAIGGAYVVLFHVAATAYGLTGIPGFLSILpsGINLLHYIVGMLIAFAVAFIATLLL 461
|
|
| NagE |
COG2190 |
Phosphotransferase system IIA component [Carbohydrate transport and metabolism]; |
466-610 |
1.00e-67 |
|
Phosphotransferase system IIA component [Carbohydrate transport and metabolism];
Pssm-ID: 441793 [Multi-domain] Cd Length: 154 Bit Score: 216.91 E-value: 1.00e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 466 ETLAAPVKGTLVALSDVPDEVFASGTMGQGIAIEPEENVVKSPVAGTVSLVYPTGHAIGITSDKGAEILIHIGIDTVNLK 545
Cdd:COG2190 6 LTIYAPVSGEVVPLSEVPDPVFASKMMGDGVAIEPTGGKVVAPVDGTVTSVFPTKHAIGLTSDDGLEVLIHIGIDTVKLN 85
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 491944983 546 GKHFKALIEQGQKVTVGTPLVEFDYQAIQAAGYAPTVMMIVTNSDQYQ-VETRSDG-ATDDDALMTL 610
Cdd:COG2190 86 GEGFTVLVKEGDKVKAGDPLIEFDLDAIKAAGYSLITPVVVTNSDEYKsVELTKSGqVKAGDPLLTV 152
|
|
| PTS_EIIA_1 |
pfam00358 |
phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; |
466-586 |
9.15e-62 |
|
phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1;
Pssm-ID: 459779 [Multi-domain] Cd Length: 121 Bit Score: 200.30 E-value: 9.15e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 466 ETLAAPVKGTLVALSDVPDEVFASGTMGQGIAIEPEENVVKSPVAGTVSLVYPTGHAIGITSDKGAEILIHIGIDTVNLK 545
Cdd:pfam00358 1 IEIYSPVSGEVIPLSEVPDPVFSQKMMGDGVAIEPSEGKVYAPVDGTVTTVFPTKHAIGITTDDGVEVLIHIGIDTVKLK 80
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 491944983 546 GKHFKALIEQGQKVTVGTPLVEFDYQAIQAAGYAPTVMMIV 586
Cdd:pfam00358 81 GEGFESLVKEGDKVKAGDLLLEFDLEAIKAAGYSTTTPVVV 121
|
|
| PRK09796 |
PRK09796 |
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional |
5-459 |
6.37e-61 |
|
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Pssm-ID: 182081 Cd Length: 472 Bit Score: 209.65 E-value: 6.37e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 5 ALAKQLLKLVGGKQNINQVWHCATRLRFTLKDQDKVPKEKVEALDGVITVVEASGQFQVVIGNNVSDVYQEVVKLEPsls 84
Cdd:PRK09796 7 ALARSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIPGVLGVVRSDNQCQVIIGNTVSQAFQEVVSLLP--- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 85 DGTEGPATVTHEKMTFKRAFNGLLTFISGVFTPFLGAMAGAGILKGLLSLAVVLGWLTTKSGAYQIWWAAADGIFYFLPL 164
Cdd:PRK09796 84 GDMQPAQPVGKPKLTLRRIGAGILDALIGTMSPLIPAIIGGSMVKLLAMILEMSGVLTKGSPTLTILNVIGDGAFFFLPL 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 165 ALAFTAAKQLKVNQFVAMAIAAAMVYPNIVALVGKPS----IDFLGIPVVAANYTATVLPILLVVVVQKFLEPFFNRIWH 240
Cdd:PRK09796 164 MVAASAAIKFKTNMSLAIAIAGVLVHPSFIELMAKAAqgehVEFALIPVTAVKYTYTVIPALVMTWCLSYIERWVDRITP 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 241 ESVRNILAPLCLLVVIVPLTMLVVGPVSSILSNGLATAIVSLNKSVPVLAGMILGGFWQVFVIFGVHWALVPVMMNNIAL 320
Cdd:PRK09796 244 AVTKNFLKPMLIVLIAAPLAILLIGPIGIWIGSAISALVYTIHGYLGWLSVAIMGALWPLLVMTGMHRVFTPTIIQTIAE 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 321 YGTDPM-MPILLPAVLAQAGAAFAVFLKARDAKMKSLAGSSTITALF-GITEPTIYGITLKLKKPFYCACVAGAVGGIIV 398
Cdd:PRK09796 324 TGKEGMvMPSEIGANLSLGGSSLAVAWKTKNPELRQTALAAAASAIMaGISEPALYGVAIRLKRPLIASLISGFICGAVA 403
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 491944983 399 AMSG-AGANVAALASILSL-------PTYLGKGFGVSVIGDVVAFVlgvgLTLAFGGINAPAKNQAATA 459
Cdd:PRK09796 404 GMAGlASHSMAAPGLFTSVqffdpanPMSIVWVFAVMALAVVLSFI----LTLLLGFEDIPVEEAAAEA 468
|
|
| PTS-IIBC-Tre |
TIGR01992 |
PTS system, trehalose-specific IIBC component; This model represents the fused enzyme II B and ... |
7-441 |
3.12e-60 |
|
PTS system, trehalose-specific IIBC component; This model represents the fused enzyme II B and C components of the trehalose-specific PTS sugar transporter system. Trehalose is converted to trehalose-6-phosphate in the process of translocation into the cell. These transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci and Streptococci which contain their own A domain as a C-terminal fusion. This family is closely related to the sucrose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively). In E. coli, B. subtilis and P. fluorescens the presence of this gene is associated with the presence of trehalase which degrades T6P to glucose and glucose-6-P. Trehalose may also be transported (in Salmonella) via the mannose PTS or galactose permease systems, or (in Sinorhizobium, Thermococcus and Sulfolobus, for instance) by ABC transporters.
Pssm-ID: 273916 Cd Length: 462 Bit Score: 207.66 E-value: 3.12e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 7 AKQLLKLVGGKQNINQVWHCATRLRFTLKDQDKVPKEKVEALDGVITVVEASGQFQVVIG-NNVSDVYQEVVKlepslsd 85
Cdd:TIGR01992 4 AKAILEAIGGKENIEAATHCVTRLRFVLKDPSKVDVKALEQIDLVKGSFTNAGQFQVVIGpGTVDKVYAALIA------- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 86 gTEGPATVTHEKMTFKRAFNG-----LLTFISGVFTPFLGAMAGAGILKGLLSLAVVLGWLTTK----------SGAYQI 150
Cdd:TIGR01992 77 -ETGIAEVSKEEVKKAAAKNMnplqrLIKLLADIFIPILPAIITAGLLMGINNLLGAKGMSFGGqtlvevypqwAGIYNF 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 151 WWAAADGIFYFLPLALAFTAAKQLKVNQFVAMAIAAAMVYPNIVA--LVGK-------PSIDFLGIPVVA-ANYTATVLP 220
Cdd:TIGR01992 156 INLIAETAFHFLPALIGWSAVKKFGGSPILGIVLGLMLVHPQLLNayLYGQalaegniPVWDLFGFFEIQkVGYQGQVLP 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 221 ILLVVVVQKFLEPFFNRIWHESVRNILAPLCLLVVIVPLTMLVVGPVSSILSNGLATAIVSLNKSVPVLAGMILGGFWQV 300
Cdd:TIGR01992 236 ALLAGYVLAVIEKWLRKRVPDAIQLLVVPPVSLLVTGFLAHAIIGPIGRLIGNGITSGVTALFTSAAWLGGAIFGLLYAP 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 301 FVIFGVHWALVPVMMNNIALYGTDPMMPILLPAVLAQAGAAFAVFLKARDAKMKSLAGSSTITALFGITEPTIYGITLKL 380
Cdd:TIGR01992 316 LVITGLHHMFLAVDLQLIGSLGGTFLWPMIALSNIAQGSAALGIIFMSRNEKEKGLSLTSAISAYLGVTEPAMFGVNLKY 395
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 491944983 381 KKPFYCACVAGAVGGIIVAMSGAGAN---VAALASILSL-PTYLGKGFGVSVIGDVVAFVLGVGL 441
Cdd:TIGR01992 396 KFPFIAAMIGSGLAGLLSGLNGVLANsigVGGLPGFISIqPQYWPVFAIGMAIAIVVPFVLTIFF 460
|
|
| PTS_IIA_glc |
cd00210 |
PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: ... |
468-591 |
2.03e-55 |
|
PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Pssm-ID: 238128 [Multi-domain] Cd Length: 124 Bit Score: 183.64 E-value: 2.03e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 468 LAAPVKGTLVALSDVPDEVFASGTMGQGIAIEPEENVVKSPVAGTVSLVYPTGHAIGITSDKGAEILIHIGIDTVNLKGK 547
Cdd:cd00210 1 LASPITGEIVPLDQVPDEVFASKMMGDGFAIKPSDGKVVAPVDGTIVQIFPTKHAIGIESDSGVEILIHIGIDTVKLNGE 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 491944983 548 HFKALIEQGQKVTVGTPLVEFDYQAIQAAGYAPTVMMIVTNSDQ 591
Cdd:cd00210 81 GFTSHVEEGQRVKQGDKLLEFDLPAIKAAGLDDTTPVIVTNSDE 124
|
|
| PTBA |
TIGR00830 |
PTS system, glucose subfamily, IIA component; These are part of the The PTS Glucose-Glucoside ... |
468-588 |
1.36e-52 |
|
PTS system, glucose subfamily, IIA component; These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. The three-dimensional structures of the IIA and IIB domains of the E. coli glucose permease have been elucidated. IIAglchas a complex b-sandwich structure while IIBglc is a split ab-sandwich with a topology unrelated to the split ab-sandwich structure of HPr. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273289 [Multi-domain] Cd Length: 121 Bit Score: 175.90 E-value: 1.36e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 468 LAAPVKGTLVALSDVPDEVFASGTMGQGIAIEPEENVVKSPVAGTVSLVYPTGHAIGITSDKGAEILIHIGIDTVNLKGK 547
Cdd:TIGR00830 1 IVSPISGEIVPLDQVPDEVFASKIVGDGFAILPTDGKVVAPVDGKIGKIFPTKHAFGIESDNGVEILIHIGIDTVKLNGE 80
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 491944983 548 HFKALIEQGQKVTVGTPLVEFDYQAIQAAGYAPTVMMIVTN 588
Cdd:TIGR00830 81 GFTSHVEEGDRVKKGDPLLEFDLKAIKKKGYSITTPVVVTN 121
|
|
| PRK11007 |
PRK11007 |
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional |
9-445 |
5.95e-44 |
|
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional
Pssm-ID: 182896 Cd Length: 473 Bit Score: 163.32 E-value: 5.95e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 9 QLLKLVGGKQNINQVWHCATRLRFTLKDQDKVPKEKVEALDGVITVVEASGQFQVVIGNNVSDVYQEVVKLEPSLSDGTE 88
Cdd:PRK11007 12 RLIELVGGRENIATVSHCITRLRFVLNDPANADPKEIEQLPMVKGCFTNAGQFQVVIGTEVGDYYKALIATTGQAEVDKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 89 GPATVTHEKMTFkraFNGLLTFISGVFTPFLGAMAGAGILKGL------------LSLAVVLGWLTTksgAYQIWWAAAD 156
Cdd:PRK11007 92 QAKKAARQNMKW---HERLISHFAEIFFPLLPALISGGLILGFrnvigdipmsdgQTLAQMYPFWQT---IYDFLWLIGE 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 157 GIFYFLPLALAFTAAKQLKVNQFVAMAIAAAMVYPNIVA--LVGK--PSIDFLGIPVVA-ANYTATVLPILLVVVVQKFL 231
Cdd:PRK11007 166 AIFFYLPVGICWSAVKKMGGTPILGIVLGVTLVSPQLMNayLLGQqlPEVWDFGLFSIEkVGYQAQVIPALLAGLALGFI 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 232 EPFFNRIWHESVRNILAPLCLLVVIVPLTMLVVGPVSSILSNGLATAI-VSLNKSVPVLAGMILGGFWQVFVIFGVHWAL 310
Cdd:PRK11007 246 ETRLKRIVPDYLYLVVVPVCSLILAVFLAHALIGPFGRMIGDGVAFAVkALMTGSFAPIGAALFGFLYAPLVITGVHQTT 325
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 311 VPVMMNNIALYGTDPMMPILLPAVLAQAGAAFAVFLKARDAKMKSLAGSSTITALFGITEPTIYGITLKLKKPFYCACVA 390
Cdd:PRK11007 326 LAIDLQMIQSMGGTPVWPLIALSNIAQASAVVGIIIISRKHNEREISVPAAISAYLGVTEPAMYGINLKYRFPMLCAMIG 405
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 491944983 391 GAVGGIIVAMSGAGAN---VAALASILSL-PTYlgkgFGVSVIGDVVAFVLGVGLTLAF 445
Cdd:PRK11007 406 SALAGLICGLNGVMANgigVGGLPGILSIqPQY----WQVYALAMLVAIVVPIVLTSFI 460
|
|
| pts-Glc |
TIGR00852 |
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside ... |
155-413 |
6.05e-38 |
|
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIC domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273299 Cd Length: 289 Bit Score: 142.07 E-value: 6.05e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 155 ADGIFYFLPLALAFTAAKQLKVNQFVAMAIAAAMVYPNI---VALVGKPSIDFLGIPVVAANYTATVLPILLVVVVQKFL 231
Cdd:TIGR00852 1 GSAAFFFLPLLFAIGAAKGFGGNPYLGAALAGILVHPVLnnaMGVGAQAVGNFFGFEIAKVGYTGVVGPIIVGAIALALH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 232 EPFFNRIWHESVRNILAPLCLLVVIVPLTMLVVGPVSSILSNGLATAIVS-LNKSVPVLAGMILGGFWQVFVIFGVHWAL 310
Cdd:TIGR00852 81 ERFLDKKLPDVLGFFLGPRFVVIIAGFVAILLIGPLGRVWPPVGISALLHwLYSAGGALGGAIFGFLYRLLVPTGLHHIF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 311 VPVMMNNIA---LYGTDPMMPILLPAVLAQAGAAFAVFLKARDAKMKSLAGSSTITALFGITEPTIYGITLKLKKPFYCA 387
Cdd:TIGR00852 161 YAIFIQLIAggtVIGGGQVIPGDALANMAQGGAALAVFFTAGDAKFKSIGLPAAFSAGLGITEPAMYGVALRERRPFVAG 240
|
250 260
....*....|....*....|....*.
gi 491944983 388 CVAGAVGGIIVAMSGAGANVAALASI 413
Cdd:TIGR00852 241 LIGSALLTAFLTGITEPLEFLFLFGA 266
|
|
| murP |
PRK09586 |
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed |
4-446 |
1.66e-33 |
|
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed
Pssm-ID: 181971 [Multi-domain] Cd Length: 476 Bit Score: 133.65 E-value: 1.66e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 4 TALAKQLLKLVGGKQNINQVWHCATRLRFTLKDQDKVPKEKVEALDGVITVVEASGQFQVVIGNNVSdvyQEVVKLEPSL 83
Cdd:PRK09586 6 SELLNTILTRVGGPGNIASCGNCMTRLRLTLHDSSLVDPAAIKTIEGVKGVILSDDQVQVVLGPGKA---QRAAKAMNEL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 84 SDGTEGPATVTHE-----KMTFK----RAFNGLLTFISGVFTPFLGAMAGAGIlkgLLSLAVVLGWLTTKSGAYQIWWAA 154
Cdd:PRK09586 83 LGEAAAPVQDLAEiaaqnKRQLKakqtSGVQQFLAKFATIFTPLIPGFIAAGL---LLGIATLIEQVMHVPADAQGTLPD 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 155 A--------DGIFYFLPLALAFTAAKQL---KVNQFVAMAIAAAMVYPNivALVGKPS--IDFLGIPV----------VA 211
Cdd:PRK09586 160 AlnymkvfsKGLFTFLSILIGYNAQQAFggtGVNGAIIASLFLLGYNPA--ATTGYYAgfHDFFGLPIdprgniigvlIA 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 212 ANYTAtvlpillvvvvqkFLEPFFNRIWHESVRNILAPLCLLVVIVPLTMLVVGPVSSILSNGLATAIVSLNKSvpVLAG 291
Cdd:PRK09586 238 AIAGA-------------RIERMVRRFMPDDLDMILTSLITLLITGALAFLIIMPLGGWLFEGMSWLFMHLNSN--PFGC 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 292 MILGGFWQVFVIFGVHWALVPVMMNNIALYGTDPMMPILLPAVLAQAGAAFAVFLKA-RDAKMKSLAGSSTITALFGITE 370
Cdd:PRK09586 303 AVLAGLFLIAVVFGVHQGFIPVYFALMDSQGFNSLFPILAMAGAGQVGAALALYWRAqKHSALRTQVKGAIIPGLLGVGE 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 371 PTIYGITLKLKKPFYCACVAGAVGGI---IVAMSG--AGAN-VAALASILSLPTYLGK-----GFGVSVIGDVVAFVLGV 439
Cdd:PRK09586 383 PLIYGVTLPRMKPFVTACLGGAAGGFfigLIAWLGlpVGLNsVFGPSGLVALPLMTSAqgilpGMAVYAGGLLVAYVCGF 462
|
....*..
gi 491944983 440 GLTLAFG 446
Cdd:PRK09586 463 IFTTLFG 469
|
|
| PRK09439 |
PRK09439 |
PTS system glucose-specific transporter subunit; Provisional |
470-569 |
4.51e-30 |
|
PTS system glucose-specific transporter subunit; Provisional
Pssm-ID: 181859 [Multi-domain] Cd Length: 169 Bit Score: 116.23 E-value: 4.51e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 470 APVKGTLVALSDVPDEVFASGTMGQGIAIEPEENVVKSPVAGTVSLVYPTGHAIGITSDKGAEILIHIGIDTVNLKGKHF 549
Cdd:PRK09439 25 APLSGEIVNIEDVPDVVFAEKIVGDGIAIKPTGNKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEGF 104
|
90 100
....*....|....*....|
gi 491944983 550 KALIEQGQKVTVGTPLVEFD 569
Cdd:PRK09439 105 KRIAEEGQRVKVGDPIIEFD 124
|
|
| PtsG2 |
COG1264 |
Phosphotransferase system IIB components [Carbohydrate transport and metabolism]; |
4-79 |
7.78e-30 |
|
Phosphotransferase system IIB components [Carbohydrate transport and metabolism];
Pssm-ID: 440876 [Multi-domain] Cd Length: 76 Bit Score: 112.13 E-value: 7.78e-30
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 491944983 4 TALAKQLLKLVGGKQNINQVWHCATRLRFTLKDQDKVPKEKVEALdGVITVVEASGQFQVVIGNNVSDVYQEVVKL 79
Cdd:COG1264 1 KELAKDILEALGGKENIVSVDHCATRLRVTVKDPSKVDEAALKKL-GVKGVVKNGGQVQVIIGPGVDKVADEIEKL 75
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
4-79 |
1.50e-28 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 108.77 E-value: 1.50e-28
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 491944983 4 TALAKQLLKLVGGKQNINQVWHCATRLRFTLKDQDKVPKEKVEALDGVITVVEASGQFQVVIGNNVSDVYQEVVKL 79
Cdd:cd00212 1 EQLAKDILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLGGVKGVVKNGGQYQVIIGPGVADVYKEAIKL 76
|
|
| PRK10255 |
PRK10255 |
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional |
429-592 |
3.00e-27 |
|
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Pssm-ID: 182338 [Multi-domain] Cd Length: 648 Bit Score: 116.89 E-value: 3.00e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 429 IGDVVAFVLGVGLTLAFGGINAPAKNQAAT---AVV-ADHAETLAAPVKGTLVALSDVPDEVFASGTMGQGIAIEPEENV 504
Cdd:PRK10255 458 IGDAMKKVVARGPVAAASAEATPATAAPVAkpqAVPnAVSIAELVSPITGDVVALDQVPDEAFASKAVGDGVAVKPTDKI 537
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 505 VKSPVAGTVSLVYPTGHAIGITSDKGAEILIHIGIDTVNLKGKHFKALIEQGQKVTVGTPLVEFDYQAIQAAGYAPTVMM 584
Cdd:PRK10255 538 VVSPAAGTIVKIFNTNHAFCLETEKGAEIVVHMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMDLDYLNANARSMISPV 617
|
....*...
gi 491944983 585 IVTNSDQY 592
Cdd:PRK10255 618 VCSNIDDF 625
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
112-392 |
1.96e-15 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 77.39 E-value: 1.96e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 112 SGVFTPFLGAMAGAGILKGLLSL-----AVVLGWLTTKSGAYQIWWAAADGIFYFLPLALAFTAAKQL-KVNQFVAMAIA 185
Cdd:pfam02378 1 GDGFMPPIPLLIAGGILLGLGNLpndttGLPAGGFTGDSPLAEILKQAGSAAFGILPILFAIGIAYGLaGGDGVAGAAGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 186 AAMVYPNIVALVGKPSID--------FLGIPVVAANYTATVLPILLVVVVQKFLEPFFNRIWHESVRNILAPLCLLVVIV 257
Cdd:pfam02378 81 IGLLSFNLAAAISVALTAaglsgggnILGIGLGATGVFGAIIPGLLAAYLYNRFEKNITIKLPDSLPFFVGKRFVPIITG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491944983 258 PLTMLVVGPVSSILSNGLATAIVSLNKSV----PVLAGMILGGFWQVFVIFGVHWALVPV----------MMNNIALYGT 323
Cdd:pfam02378 161 FVTLLVIGPVLGLIWPAIQGGLNALGLLLiiagGILGGLIFGFLERLLWPFGLHGAFIAIfwflpiggsnPIANQQAYGA 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 491944983 324 DPMMPILLPAVL-----AQAGAAFAVFLKARDAKMKSLAGSSTIT-ALFGITEPTIYGITLKLKKPFYCACVAGA 392
Cdd:pfam02378 241 GAAHILTGGFDVmfggpGATLALYAAAFLFKKSKVKKLLGSAALTpFLFGITEPLEFGFPFVLNPPFFIPAILAG 315
|
|
| PTS_EIIB |
pfam00367 |
phosphotransferase system, EIIB; |
8-39 |
2.81e-13 |
|
phosphotransferase system, EIIB;
Pssm-ID: 459785 [Multi-domain] Cd Length: 32 Bit Score: 63.93 E-value: 2.81e-13
10 20 30
....*....|....*....|....*....|..
gi 491944983 8 KQLLKLVGGKQNINQVWHCATRLRFTLKDQDK 39
Cdd:pfam00367 1 KEILEALGGKENIKSVDHCATRLRLTVKDESK 32
|
|
| PRK14905 |
PRK14905 |
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; ... |
4-79 |
3.27e-12 |
|
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Pssm-ID: 184898 [Multi-domain] Cd Length: 355 Bit Score: 68.13 E-value: 3.27e-12
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 491944983 4 TALAKQLLKLVGGKQNINQVWHCATRLRFTLKDQDKVPKEKVEALDGVITVVEASGQFQVVIGNN-VSDVYQEVVKL 79
Cdd:PRK14905 275 SEIAIQLIDHLGGKDNISALTHCASRIRVMLRNDGHIDKSAIEKIDCVKGLFSIANQYQIILGAGiVEKIHEEMKAL 351
|
|
| EIIB_glc |
TIGR00826 |
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) ... |
28-85 |
9.43e-11 |
|
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIB domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273288 [Multi-domain] Cd Length: 88 Bit Score: 58.52 E-value: 9.43e-11
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 491944983 28 TRLRFTLKDQDKVPKEKVEALDGVITVVEASGQFQVVIGN-NVSDVYQEVVKLEPSLSD 85
Cdd:TIGR00826 1 TRLRLKTPGREKADEEAIAAGEGVKGVFTAAGQIQALGGTgNVNKVDACITRLRVGVAD 59
|
|
| EIIB_glc |
TIGR00826 |
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) ... |
6-66 |
1.42e-07 |
|
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIB domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273288 [Multi-domain] Cd Length: 88 Bit Score: 49.28 E-value: 1.42e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 491944983 6 LAKQLLKLVGGKQNINQVWHCATRLRFTLKDQDKVPKEKVEALdGVITVVEASGQFQVVIG 66
Cdd:TIGR00826 29 TAAGQIQALGGTGNVNKVDACITRLRVGVADVSKVDDAVLKKL-GAHGVNPLQRAVQVISG 88
|
|
| PRK09702 |
PRK09702 |
PTS sugar transporter subunit IIB; |
7-79 |
4.11e-04 |
|
PTS sugar transporter subunit IIB;
Pssm-ID: 77355 [Multi-domain] Cd Length: 161 Bit Score: 41.24 E-value: 4.11e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 491944983 7 AKQLLKLVGGKQNINQVWHCATRLRFTLKDQDKVPKEKVEALDGVITVVEASGQFQVVIGNNVSDVYQEVVKL 79
Cdd:PRK09702 73 AAGILQALGGVGNISSINNCATRLRIALHDMSQTLDDEVFKKLGAHGVFRSGDAIQVIIGLHVSQLREQLDSL 145
|
|
| PRK11089 |
PRK11089 |
PTS system glucose-specific transporter subunits IIBC; Provisional |
4-66 |
4.14e-03 |
|
PTS system glucose-specific transporter subunits IIBC; Provisional
Pssm-ID: 182955 [Multi-domain] Cd Length: 477 Bit Score: 40.08 E-value: 4.14e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 491944983 4 TALAKQLLKLVGGKQNINQVWHCATRLRFTLKDQDKVPKEKVEALDGVITVVEASGqFQVVIG 66
Cdd:PRK11089 399 SEMAPALVAAFGGKENITNLDACITRLRVSVADVSKVDQAGLKKLGAAGVVVAGSG-VQAIFG 460
|
|
| |
