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Conserved domains on  [gi|491046289|ref|WP_004907944|]
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MULTISPECIES: spermidine/putrescine ABC transporter permease PotB [Providencia]

Protein Classification

spermidine/putrescine ABC transporter permease PotB( domain architecture ID 10793277)

spermidine/putrescine ABC transporter permease PotB is a transmembrane (TM) subunit of the periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter PotABCD that is responsible for the translocation across the membrane of putrescine and spermidine

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 5-284 2.76e-160

spermidine/putrescine ABC transporter membrane protein; Reviewed


:

Pssm-ID: 181910  Cd Length: 285  Bit Score: 447.21  E-value: 2.76e-160
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289   5 KHKILQNVIITGVVAWLLLFVFLPNIMIIGTSFLTRSDTNLVDLVFTWDNYIRLSDPMYAEVMLHSLNMAVIATFFCLVI 84
Cdd:PRK09497   3 NTSKFQNVVIVTIVGWLVLFVFLPNLMIIGTSFLTRDDANFVKMVFTLDNYTRLLDPLYAEVLLHSLNMALIATLACLVL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289  85 GYPFAFILARLPKRIQPLMLFLLIVPFWTNSLIRIYGLKVFLSTKGYLNDFLLWVGVIDKPLKIMYTPEAVILGLIYILL 164
Cdd:PRK09497  83 GYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGVIDTPIRIMFTESAVIIGLVYILL 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289 165 PFMVMPLYSSIEKLDKSYIEAAKDLGANKFQRFVKIIIPLTMPGIIAGCLLVLLPAMGLFYVADLMGGAKNLLIGNVIKS 244
Cdd:PRK09497 163 PFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAMGMFYVSDLLGGAKNLLIGNVIKS 242

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 491046289 245 QFLNIRDWPFGAATSIFLTAMMGLLLYVYYRAAKLLNKKA 284
Cdd:PRK09497 243 QFLNIRDWPFGAATSITLTIVMGLMLLVYYRASKLLNKKV 282
 
Name Accession Description Interval E-value
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 5-284 2.76e-160

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 447.21  E-value: 2.76e-160
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289   5 KHKILQNVIITGVVAWLLLFVFLPNIMIIGTSFLTRSDTNLVDLVFTWDNYIRLSDPMYAEVMLHSLNMAVIATFFCLVI 84
Cdd:PRK09497   3 NTSKFQNVVIVTIVGWLVLFVFLPNLMIIGTSFLTRDDANFVKMVFTLDNYTRLLDPLYAEVLLHSLNMALIATLACLVL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289  85 GYPFAFILARLPKRIQPLMLFLLIVPFWTNSLIRIYGLKVFLSTKGYLNDFLLWVGVIDKPLKIMYTPEAVILGLIYILL 164
Cdd:PRK09497  83 GYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGVIDTPIRIMFTESAVIIGLVYILL 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289 165 PFMVMPLYSSIEKLDKSYIEAAKDLGANKFQRFVKIIIPLTMPGIIAGCLLVLLPAMGLFYVADLMGGAKNLLIGNVIKS 244
Cdd:PRK09497 163 PFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAMGMFYVSDLLGGAKNLLIGNVIKS 242

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 491046289 245 QFLNIRDWPFGAATSIFLTAMMGLLLYVYYRAAKLLNKKA 284
Cdd:PRK09497 243 QFLNIRDWPFGAATSITLTIVMGLMLLVYYRASKLLNKKV 282
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 17-284 3.97e-104

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 304.76  E-value: 3.97e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289  17 VVAWLLLFVFLPNIMIIGTSFLTRSDTNLVDLVFTWDNYIR-LSDPMYAEVMLHSLNMAVIATFFCLVIGYPFAFILARL 95
Cdd:COG1176   18 ALLWLLLFFVLPLLLLLVYSFTTRDPYGGVVPGFTLENYARlFTDPLYLKVLLRTLWIALLTTLICLLLGYPIAYFLARA 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289  96 PKRIQPLMLFLLIVPFWTNSLIRIYGLKVFLSTKGYLNDFLLWVGVIDKPLKIMYTPEAVILGLIYILLPFMVMPLYSSI 175
Cdd:COG1176   98 PPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRNGLLNSLLLALGLIDEPLRLLYTEFAVVIGLVYVYLPFMVLPLYAAL 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289 176 EKLDKSYIEAAKDLGANKFQRFVKIIIPLTMPGIIAGCLLVLLPAMGLFYVADLMGGAKNLLIGNVIKSQFLNIRDWPFG 255
Cdd:COG1176  178 EKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGKVLMIGNLIYQQFLSALNWPLA 257

                        250       260
                 ....*....|....*....|....*....
gi 491046289 256 AATSIFLTAMMGLLLYVYYRAAKLLNKKA 284
Cdd:COG1176  258 AALAVVLLLIVLLVLLLYLRLLRRRRLLG 286
Mo_ABC_porter TIGR01581
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ...
 58-272 1.67e-17

NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.


Pssm-ID: 130643  Cd Length: 225  Bit Score: 79.36  E-value: 1.67e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289   58 LSDPMYAEVMLHSLNMAVIATFFCLVIGYPFAFILARLPKRIQPLMLFLLIVPFWTNSLIRIYGLKVFLSTKGYLNDFLL 137
Cdd:TIGR01581  14 LTDPENIKALRLSLATSLASLLLAVIIGIPTAYVLARVRFPLKKLLDTLLDLPMVLPPLVAGLALLLLFGRNGLLGPYLE 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289  138 WVGVidkplKIMYTPEAVILGLIYILLPFMVMPLYSSIEKLDKSYIEAAKDLGANKFQRFVKIIIPLTMPGIIAGCLLVL 217
Cdd:TIGR01581  94 AAGI-----QVIFSTLGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLLAGLVLAW 168

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 491046289  218 LPAMGLFYVADLMGGAKNLLIGNVIKSQFLNIRDWPFGAAT--SIFLTAMMGLLLYV 272
Cdd:TIGR01581 169 ARALGEFGATLMFAGSIQGKTRTLPLAIYLNIQSDNIEAAVasALLLLVIAFLLLLV 225
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 67-266 8.80e-15

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 71.16  E-value: 8.80e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289  67 MLHSLNMAVIATFFCLVIGYPFAFILARLPKRIQPLMLFLLIVPFWTNSLIRIYGLKVFLSTKGYLNDFLLWVgvidkpl 146
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLG------- 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289 147 kimytpEAVILGLIYILLPFMVMPLYSSIEKLDKSYIEAAKDLGANKFQRFVKIIIPLTMPGIIAGCLLVLLPAMGLFYV 226
Cdd:cd06261   74 ------LPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFAL 147

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 491046289 227 ADLMGG--AKNLLIGNVIKSQFLNIRDWPFGAATSIFLTAMM 266
Cdd:cd06261  148 VSFLGGgeAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLS 189
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 150-283 4.59e-08

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 51.92  E-value: 4.59e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289  150 YTPEAVILGLIYILLPFMVMPLYSSIEKLDKSYIEAAKDLGANKFQRFVKIIIPLTMPGIIAGCLLVLLPAMGLFYVADL 229
Cdd:pfam00528  50 HGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEF 129

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 491046289  230 MGGAKNLligNVIKSQFLNIRDWPFGAATSIFLTAMMGLLLYVYYRAAKLLNKK 283
Cdd:pfam00528 130 LGSWPGL---GLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPR 180
 
Name Accession Description Interval E-value
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 5-284 2.76e-160

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 447.21  E-value: 2.76e-160
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289   5 KHKILQNVIITGVVAWLLLFVFLPNIMIIGTSFLTRSDTNLVDLVFTWDNYIRLSDPMYAEVMLHSLNMAVIATFFCLVI 84
Cdd:PRK09497   3 NTSKFQNVVIVTIVGWLVLFVFLPNLMIIGTSFLTRDDANFVKMVFTLDNYTRLLDPLYAEVLLHSLNMALIATLACLVL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289  85 GYPFAFILARLPKRIQPLMLFLLIVPFWTNSLIRIYGLKVFLSTKGYLNDFLLWVGVIDKPLKIMYTPEAVILGLIYILL 164
Cdd:PRK09497  83 GYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGVIDTPIRIMFTESAVIIGLVYILL 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289 165 PFMVMPLYSSIEKLDKSYIEAAKDLGANKFQRFVKIIIPLTMPGIIAGCLLVLLPAMGLFYVADLMGGAKNLLIGNVIKS 244
Cdd:PRK09497 163 PFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAMGMFYVSDLLGGAKNLLIGNVIKS 242

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 491046289 245 QFLNIRDWPFGAATSIFLTAMMGLLLYVYYRAAKLLNKKA 284
Cdd:PRK09497 243 QFLNIRDWPFGAATSITLTIVMGLMLLVYYRASKLLNKKV 282
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 17-284 3.97e-104

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 304.76  E-value: 3.97e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289  17 VVAWLLLFVFLPNIMIIGTSFLTRSDTNLVDLVFTWDNYIR-LSDPMYAEVMLHSLNMAVIATFFCLVIGYPFAFILARL 95
Cdd:COG1176   18 ALLWLLLFFVLPLLLLLVYSFTTRDPYGGVVPGFTLENYARlFTDPLYLKVLLRTLWIALLTTLICLLLGYPIAYFLARA 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289  96 PKRIQPLMLFLLIVPFWTNSLIRIYGLKVFLSTKGYLNDFLLWVGVIDKPLKIMYTPEAVILGLIYILLPFMVMPLYSSI 175
Cdd:COG1176   98 PPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRNGLLNSLLLALGLIDEPLRLLYTEFAVVIGLVYVYLPFMVLPLYAAL 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289 176 EKLDKSYIEAAKDLGANKFQRFVKIIIPLTMPGIIAGCLLVLLPAMGLFYVADLMGGAKNLLIGNVIKSQFLNIRDWPFG 255
Cdd:COG1176  178 EKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGKVLMIGNLIYQQFLSALNWPLA 257

                        250       260
                 ....*....|....*....|....*....
gi 491046289 256 AATSIFLTAMMGLLLYVYYRAAKLLNKKA 284
Cdd:COG1176  258 AALAVVLLLIVLLVLLLYLRLLRRRRLLG 286
PRK10683 PRK10683
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 20-272 1.73e-61

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182646  Cd Length: 317  Bit Score: 197.24  E-value: 1.73e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289  20 WLLLFVFLPNIMIIGTSF-------------LTRSDTNLvDLVFTWDNYIRL-SDPMYAEVMLHSLNMAVIATFFCLVIG 85
Cdd:PRK10683  39 WLILLFLLPFLIVFKISLaemaraippytdlMEWADGQL-SITLNLGNFLQLtDDPLYFDAYLQSLQVAAISTLCCLLIG 117

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289  86 YPFAFILARLPKRIQPLMLFLLIVPFWTNSLIRIYGLKVFLSTKGYLNDFLLWVGVIDKPLKIMYTPEAVILGLIYILLP 165
Cdd:PRK10683 118 YPLAWAVAHSKPSTRNILLLLVILPSWTSFLIRVYAWMGILKNNGVLNNFLLWLGVIDQPLTILHTNLAVYIGIVYAYLP 197

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289 166 FMVMPLYSSIEKLDKSYIEAAKDLGANKFQRFVKIIIPLTMPGIIAGCLLVLLPAMGLFYVADLMGGAKNLLIGNVIKSQ 245
Cdd:PRK10683 198 FMVLPIYTALTRIDYSLVEAALDLGARPLKTFFSVIVPLTKGGIIAGSMLVFIPAVGEFVIPELLGGPDSIMIGRVLWQE 277

                        250       260
                 ....*....|....*....|....*..
gi 491046289 246 FLNIRDWPFGAATSIfltaMMGLLLYV 272
Cdd:PRK10683 278 FFNNRDWPVASAVAI----IMLLLLIV 300
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
11-278 6.72e-31

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 120.65  E-value: 6.72e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289  11 NVIITGVVAWLLLFVFLPNIMIIGTSFLTRsdtnlvdlvftWDNYIR-LSDPMYAEVMLHSLNMAVIATFFCLVIGYPFA 89
Cdd:COG1178   10 RLLLLLLALLLALLVLLPLLALLLRAFTDG-----------LANFWAlLSDPYLWRALGNTLLLALLVTLLSLLLGVPLA 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289  90 FILARLPKRIQPLMLFLLIVPFWTNSLIRIYGLKVFLSTKGYLNDFLLWVGVIDKPLkiMYTPEAVILGLIYILLPFMVM 169
Cdd:COG1178   79 WLLARTDFPGRRLLRWLLLLPLALPPYVVALAWIALFGPNGLLNTLLRALFGLEPPD--IYGLGGIILVLVLFNYPYVYL 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289 170 PLYSSIEKLDKSYIEAAKDLGANKFQRFVKIIIPLTMPGIIAGCLLVLLPAMGLFYVADLMGGAKNLLIGnVIKSQFLNI 249
Cdd:COG1178  157 LLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVLGGGYTTLTT-AIYQAWLGD 235

                        250       260
                 ....*....|....*....|....*....
gi 491046289 250 RDWPFGAATSIFLTAMMGLLLYVYYRAAK 278
Cdd:COG1178  236 FDLGAAAALALVLLLLVLLLLLLERRLRR 264
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 4-284 1.07e-26

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 104.81  E-value: 1.07e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289   4 RKHKILQNVIITGVvawlLLFVFLPNIMIIGTSFLTRSDTNLVDLVFTWDNYIRL-SDPMYAEVMLHSLNMAVIATFFCL 82
Cdd:COG1177    3 RLGRLLLRLFLALV----LLFLYLPILVLVLYSFNDSWFLTFPPEGFTLRWYAELfSDPRLLDALLNSLLIALLSTLLAT 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289  83 VIGYPFAFILARLPKRIQPLMLFLLIVPFWTNSLIRIYGLKVFLSTkgylndfllwvgvidkpLKIMYTPEAVILGLIYI 162
Cdd:COG1177   79 VLGTPAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSA-----------------LGLSGGLWGLILAHVVF 141

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289 163 LLPFMVMPLYSSIEKLDKSYIEAAKDLGANKFQRFVKIIIPLTMPGIIAGCLLVLLPAMGLFYVADLMGGAKN----LLI 238
Cdd:COG1177  142 TLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVttlpVYI 221

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 491046289 239 GNVIKSQFlnirdWPFGAATSIFLTAMMGLLLYVYYRAAKLLNKKA 284
Cdd:COG1177  222 YSMIRRGI-----SPEINALSTLLILLSLLLLLLAERLRRRGERRR 262
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 60-224 2.46e-23

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 95.12  E-value: 2.46e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289  60 DPMYAEVMLHSLNMAVIATFFCLVIGYPFAFILARLPKRIQPLMLFLLIVPFwtnslirI-------YGLKVFLSTKGYL 132
Cdd:COG4149    2 SPEDWSALWLSLKVALIATLLLLLLGIPLAWWLARTRFRGKGLLEALVTLPL-------VlpptvlgFYLLLLFGRNGPL 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289 133 NDFLLWVGVIdkplKIMYTPEAVILGLIYILLPFMVMPLYSSIEKLDKSYIEAAKDLGANKFQRFVKIIIPLTMPGIIAG 212
Cdd:COG4149   75 GQLLEELFGI----SLVFTWTGAVLASVVVSLPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAG 150

                        170
                 ....*....|..
gi 491046289 213 CLLVLLPAMGLF 224
Cdd:COG4149  151 AVLAFARALGEF 162
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 18-224 9.58e-23

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 94.43  E-value: 9.58e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289  18 VAWLLLFVFLPNIMIIGTSFLTrsdtnlvdlvfTWDNYIR-LSDPMYAEVMLHSLNMAVIATFFCLVIGYPFAFILARLP 96
Cdd:COG0555   17 LLYLSLIVLLPLAALVLKAAGL-----------GWAEFWAvLTSPRVLAALKLSLGTALIAALINLVFGLPLAWVLVRYR 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289  97 KRIQPLMLFLLIVPFWTNSLIRIYGLKVFLSTKGYLNDFLLWVGvidkpLKIMYTPEAVILGLIYILLPFMVMPLYSSIE 176
Cdd:COG0555   86 FPGKRLVDALVDLPFALPTAVAGIALLLLFGPNGWLGQLLAPLG-----IKVAFTPLGIVLAQTFVSLPFVVRTVQPVLE 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 491046289 177 KLDKSYIEAAKDLGANKFQRFVKIIIPLTMPGIIAGCLLVLLPAMGLF 224
Cdd:COG0555  161 ELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEF 208
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
12-278 2.85e-21

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 93.30  E-value: 2.85e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289  12 VIITGVVAWLLLFVFLPNIMIIGTSFltrsdTNLVDLVFTWDNYIR-LSDPMYAEVMLHSLNMAVIATFFCLVIGYPFAF 90
Cdd:COG1178  289 LALALCLLLVLLGLLLPLLALLLWSL-----TKALDDNLTLDNYRFvLLDPSLLRALLNSLLLALLAALLAVLLALLLAY 363

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289  91 ILARLPKRIQPLMLFLLIVPfwtnsliriYGLK-VFLSTkGYlndFLLWVGVIdkPLKIMYTPEAVILGLIYILLPFMVM 169
Cdd:COG1178  364 LVRRRRGRLARLLDRLAMLP---------YAVPgIVLGL-GL---LLLFNRPL--PLLLYGTLAILVLAYVVRFLPFALR 428

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289 170 PLYSSIEKLDKSYIEAAKDLGANKFQRFVKIIIPLTMPGIIAGCLLVLLPAMGLFYVADLMGGAKNLLIGNVIKsQFLNI 249
Cdd:COG1178  429 SLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLRPPGFETLAVLIY-QLASS 507

                        250       260
                 ....*....|....*....|....*....
gi 491046289 250 RDWPFGAATSIFLTAMMGLLLYVYYRAAK 278
Cdd:COG1178  508 GRYGEAAALALLLVLVSLLPVLLLERLLG 536
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
18-278 2.35e-18

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 82.88  E-value: 2.35e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289  18 VAWLLLFVFLPNIMIIGTSFltrSDTNLVDLVFTW---DNYIRL-SDPMYAEVMLHSLNMAVIATFFCLVIGYPFAFILA 93
Cdd:COG1175   28 LLLLLVFVLYPLLYTLYLSF---TDWNLLGPPPEFvglDNYARLfTDPRFWNALGNTLLFTVVSVPLQLVLGLLLALLLN 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289  94 RlPKRIQPLMLFLLIVPFWTNSLIRIYGLKVFLS-TKGYLNDFLLWVGVidKPLKIMYTPE----AVILGLIYILLPFMV 168
Cdd:COG1175  105 R-KLRGRGFFRTLFFLPWVISPVVVALIWKWLFNpDYGLLNALLGALGL--EPINWLGDPSlalpAVIIVTVWKGTGFNM 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289 169 MPLYSSIEKLDKSYIEAAKDLGANKFQRFVKIIIPLTMPGIIAGCLLVLLPAMGLFYVADLM--GGAKN--LLIGNVIKS 244
Cdd:COG1175  182 LIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLtgGGPGNstTTLVLYIYQ 261

                        250       260       270
                 ....*....|....*....|....*....|....
gi 491046289 245 QFLNIRDWPFGAATSIFLTAMMGLLLYVYYRAAK 278
Cdd:COG1175  262 TAFQQFDFGYASAIAVVLFLIILVLTLLQLRLLR 295
Mo_ABC_porter TIGR01581
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ...
 58-272 1.67e-17

NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.


Pssm-ID: 130643  Cd Length: 225  Bit Score: 79.36  E-value: 1.67e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289   58 LSDPMYAEVMLHSLNMAVIATFFCLVIGYPFAFILARLPKRIQPLMLFLLIVPFWTNSLIRIYGLKVFLSTKGYLNDFLL 137
Cdd:TIGR01581  14 LTDPENIKALRLSLATSLASLLLAVIIGIPTAYVLARVRFPLKKLLDTLLDLPMVLPPLVAGLALLLLFGRNGLLGPYLE 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289  138 WVGVidkplKIMYTPEAVILGLIYILLPFMVMPLYSSIEKLDKSYIEAAKDLGANKFQRFVKIIIPLTMPGIIAGCLLVL 217
Cdd:TIGR01581  94 AAGI-----QVIFSTLGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLLAGLVLAW 168

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 491046289  218 LPAMGLFYVADLMGGAKNLLIGNVIKSQFLNIRDWPFGAAT--SIFLTAMMGLLLYV 272
Cdd:TIGR01581 169 ARALGEFGATLMFAGSIQGKTRTLPLAIYLNIQSDNIEAAVasALLLLVIAFLLLLV 225
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 67-266 8.80e-15

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 71.16  E-value: 8.80e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289  67 MLHSLNMAVIATFFCLVIGYPFAFILARLPKRIQPLMLFLLIVPFWTNSLIRIYGLKVFLSTKGYLNDFLLWVgvidkpl 146
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLG------- 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289 147 kimytpEAVILGLIYILLPFMVMPLYSSIEKLDKSYIEAAKDLGANKFQRFVKIIIPLTMPGIIAGCLLVLLPAMGLFYV 226
Cdd:cd06261   74 ------LPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFAL 147

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 491046289 227 ADLMGG--AKNLLIGNVIKSQFLNIRDWPFGAATSIFLTAMM 266
Cdd:cd06261  148 VSFLGGgeAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLS 189
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 18-277 8.21e-14

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 70.03  E-value: 8.21e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289  18 VAWLLLFVFLPNIMIIGTSFLTRSDTNLVdlvfTWDNYirLSDPMYAEVMLHSLNMAVIATFFCLVIGYPFAFILARLPK 97
Cdd:PRK15050  32 LLVLAPLVVYPLVRVVLQSLTGEHGLGLA----TYRAV--LGSPDFRGALLTTLQIAFASTAGCLVLGVLLALVLAFVPF 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289  98 RIQPLM-----LFLLIVPFW-TNSLIRIYGlkvflsTKGYLNDFLLWV-GVIDKPLKIMYTPEAVILGLIYILLPFMVMP 170
Cdd:PRK15050 106 PGASLVgrfidTFVAFPSFLiTLAFTFLYG------SAGSVNIALQRLfGLEAPPLDFLYSPGGVILAEITFYTPFVVRP 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289 171 LYSSIEKLDKSYIEAAKDLGANKFQRFVKIIIPLTMPGIIAGCLLVLLPAMGLFYVAdLMGGAKNLLIGNV-IKSQFLNI 249
Cdd:PRK15050 180 LLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLNEFGIV-LFTGAKDVVTLPVlIYSKAIVD 258

                        250       260
                 ....*....|....*....|....*...
gi 491046289 250 RDWPfGAATSIFLTAMMGLLLYVYYRAA 277
Cdd:PRK15050 259 FDYP-TACAIAVVNLALSLGLYALYRRV 285
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 4-211 1.09e-13

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 69.35  E-value: 1.09e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289   4 RKHKILQNVIITGVVAWLLLFVFLPNIMIIGTSFLTRSDTNLVDLV-----FTWDNYIR-LSDPMYAEVMLHSLNMAVIA 77
Cdd:COG0395    7 RRRRRLGRILLYLLLILLALLFLFPLYWMVVTSFKPPAEIFSGPPSllpseFTLENYRAaFTDGPFGRYLLNSLIVAVVS 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289  78 TFFCLVIGYPFAFILARLPKRIQPLMLFLLIVPFWTNSLIRIYGLKVFLSTKGYLNDFLlwvgvidkplkimytpeAVIL 157
Cdd:COG0395   87 TVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYW-----------------GLIL 149

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 491046289 158 GLIYILLPFMVMPLYSSIEKLDKSYIEAAKDLGANKFQRFVKIIIPLTMPGIIA 211
Cdd:COG0395  150 PYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALAT 203
COG4132 COG4132
ABC-type uncharacterized transport system, permease component [General function prediction ...
 18-273 3.38e-12

ABC-type uncharacterized transport system, permease component [General function prediction only];


Pssm-ID: 443307 [Multi-domain]  Cd Length: 286  Bit Score: 65.21  E-value: 3.38e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289  18 VAWLLLFVFLPNIMIIGTSFLTRSDTnlvdlvFTWDNYIRLSDPMYAEVMLHSLNMAVIATFFCLVIGYPFAFILARL-P 96
Cdd:COG4132   22 FLFVLLFLLLPTVWVVIGAFQDDDGG------FTLANYAELTSPFYLQAFWNSIWLSLASALIGAVIGLLLAYALRRGgP 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289  97 KRIQPLML---------------FLLIVPFWTNSLIriyglKVFLSTKGY--LNDFLL--WVGVIdkplkIMYtpeavil 157
Cdd:COG4132   96 GWLRRAVLafsgvasnfagvplaFAFIATLGRNGLV-----TLLLKQLGIdlYDGFNLysFWGLI-----LVY------- 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289 158 glIYILLPFMVMPLYSSIEKLDKSYIEAAKDLGANKFQRFVKIIIPLTMPGIIAGCLLVLLPAMGLF-YVADLMGGAKNL 236
Cdd:COG4132  159 --LYFQIPLMVLLLYPALDGLRREWREAAALLGASRWQYWRRVALPVLAPSLLGTFLLLFANAFGAYaTAYALTGGNYNL 236

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 491046289 237 ---LIGNVIKSQFLNirDWPFGAATSIFLTAMMGLLLYVY 273
Cdd:COG4132  237 vpiRIGALISGDVLL--DPNLGAALALGMIVIMALVMALY 274
permease_CysT TIGR02139
sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two ...
 18-222 4.19e-12

sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 131194  Cd Length: 265  Bit Score: 64.65  E-value: 4.19e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289   18 VAWLLLFVFLPNI-MIIGTSFLTrsdtnlvdlvftWDNYIRL-SDPMYAEVMLHSLNMAVIATFFCLVIGYPFAFILARL 95
Cdd:TIGR02139  13 LTYLSLIVLLPLAaLFLKASQLG------------WAGFWQIiTEPRVLAAYKLSFGTALIAALINAVFGTLLAWVLVRY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289   96 PKRIQPLMLFLLIVPFWTNSLIRIYGLKVFLSTKGYLNDFLLWVGVidkplKIMYTPEAVILGLIYILLPFMVMPLYSSI 175
Cdd:TIGR02139  81 RFPGKRIVDALVDLPFALPTAVAGIALATLYSPNGWIGSFLAPLGI-----KIAFTPLGIVIALVFVSLPFVVRTVQPVL 155

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 491046289  176 EKLDKSYIEAAKDLGANKFQRFVKIIIPLTMPGIIAGCLLVLLPAMG 222
Cdd:TIGR02139 156 EEIEKELEEAAASLGASRWQTFWRVILPALLPALLTGFALAFARAVG 202
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 8-276 1.23e-11

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 64.70  E-value: 1.23e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289    8 ILQNVIITGVVAWLLLFVFLPNIMIIGTSFLTRSDT-----NLVDLvftwdnyirLSDPMYAEVMLHSLNMAVIATFFCL 82
Cdd:TIGR03262   1 LIARLLLAGMILALLLFLLLPLLALLTKSVYDSDGDfiglaNFAEY---------FATPGLLQSLGNSLTVSAIVTAIVV 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289   83 VIGYPFAFILARLPKRIQPLMLFLLIVPFWTNSLIRIYGLKVFLSTKGYLNDFLLWVGVidkplkimYTPEAVILGLIYI 162
Cdd:TIGR03262  72 PLAFAFAYALTRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQGLLKGLLGGFSI--------YGFWGIVIGEVFY 143

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289  163 LLPFMVMPLYSSIEKLDKSYIEAAKDLGANKFQRFVKIIIPLTMPGIIAGCLLVLLPAMGLFYVADLMGGAKNLLIGNVI 242
Cdd:TIGR03262 144 TFPHALMILVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVPKVIGGDYNVLATDIY 223

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 491046289  243 KsQFLNIRDWPFGAATSIFL--TAMMGLLLYVYYRA 276
Cdd:TIGR03262 224 K-QVIGQQNFPMGAVVGVLLllPALLAFGIDRAIQR 258
modB PRK09421
molybdate ABC transporter permease subunit;
58-224 1.58e-10

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 59.94  E-value: 1.58e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289  58 LSDPMYAEVMLhSLNMAVIATFFCLVIGYPFAFILARLPKRIQPLMLFLLIVPFWTNSLIRIYGLKVFLSTKGYLNDFLL 137
Cdd:PRK09421   3 LSDPEWQAVLL-SLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGQWLY 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289 138 -WVGvidkpLKIMYTPEAVILGLIYILLPFMVMPLYSSIEKLDKSYIEAAKDLGANKFQRFVKIIIPLTMPGIIAGCLLV 216
Cdd:PRK09421  82 eWFG-----ISFAFSWRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLA 156


                 ....*...
gi 491046289 217 LLPAMGLF 224
Cdd:PRK09421 157 FARSLGEF 164
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 23-215 2.02e-10

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 59.61  E-value: 2.02e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289  23 LFVFLPNIMIIGTSFlTRSDTNLVDLVFTWDNYIRL--SDPMyAEVMLHSLNMAVIATFFCLVIGYPFAFILARLPKRIQ 100
Cdd:PRK09500  15 AYLYIPIIILIVNSF-NSSRFGINWKGFTTKWYELLfnNDSL-LQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGK 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289 101 PL---MLFLLIVPfwTNSLIRIYGLKVFLSTKGYLNDFLLWvgvidkplkimytpeaviLGLIYILLPFMVMPLYSSIEK 177
Cdd:PRK09500  93 KFvsgMLFVVMMS--PDIVMAISLLVLFMLLGIQLGFWSLL------------------FAHITFCLPFVVVTVYSRLKG 152

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 491046289 178 LDKSYIEAAKDLGANKFQRFVKIIIPLTMPGIIAGCLL 215
Cdd:PRK09500 153 FDVRMLEAAKDLGASEFTILRKIILPLALPAVAAGWLL 190
cysT CHL00187
sulfate transport protein; Provisional
 70-224 3.17e-10

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 58.87  E-value: 3.17e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289  70 SLNMAVIATFFCLVIGYPFAFILARLPKRIQPLMLFLLIVPFWTNSLIRIYGLKVFLSTKGYLNDFLLWVGvidkpLKIM 149
Cdd:CHL00187  60 TLSMALIAALINGFFGLLIAWVLVRYNFPGKRLLDAAVDLPFALPTSVAGLTLATVYGDNGWIGHLLSHLG-----IQIV 134

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 491046289 150 YTPEAVILGLIYILLPFMVMPLYSSIEKLDKSYIEAAKDLGANKFQRFVKIIIPLTMPGIIAGCLLVLLPAMGLF 224
Cdd:CHL00187 135 FTKLGVLLAMIFVSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGEY 209
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
74-271 1.85e-09

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 57.07  E-value: 1.85e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289  74 AVIATFFCLVIGYPFAFILARLPKRIQPLMLFLLIVPFWTNSLIRIYGLKVFLSTKGYLNDFLLWVGVidkplKIMYTPE 153
Cdd:PRK10971  67 AFVASIFNAVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGWYGEWLAKFDI-----KVTYTWL 141

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289 154 AVILGLIYILLPFMVMPLYSSIEKLDKSYIEAAKDLGANKFQRFVKIIIPLTMPGIIAGCLLVLLPAMGLFYVADLMGGa 233
Cdd:PRK10971 142 GIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEFGAVIFIAG- 220

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 491046289 234 kNLLIGNVIKSQFLNIR----DWPFGAATSIFLTAMMGLLLY 271
Cdd:PRK10971 221 -NIAWKTEVTSLMIFVRlqefDYPAASAIASVILAASLLLLF 261
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 150-283 4.59e-08

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 51.92  E-value: 4.59e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289  150 YTPEAVILGLIYILLPFMVMPLYSSIEKLDKSYIEAAKDLGANKFQRFVKIIIPLTMPGIIAGCLLVLLPAMGLFYVADL 229
Cdd:pfam00528  50 HGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEF 129

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 491046289  230 MGGAKNLligNVIKSQFLNIRDWPFGAATSIFLTAMMGLLLYVYYRAAKLLNKK 283
Cdd:pfam00528 130 LGSWPGL---GLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPR 180
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 135-212 3.98e-05

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 43.98  E-value: 3.98e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 491046289 135 FLLWVGvidkplkimYTPEAVILGLIYILLPFMVMPLYSSIEKLDKSYIEAAKDLGANKFQRFVKIIIPLTMPGIIAG 212
Cdd:COG0600  117 LILWFG---------IGEASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTG 185
PstC COG0573
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 162-222 5.05e-05

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440338 [Multi-domain]  Cd Length: 303  Bit Score: 43.93  E-value: 5.05e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 491046289 162 ILLPFMVMPLYSSI-----EKLDKSYIEAAKDLGANKFQRFVKIIIPLTMPGIIAGCLLVLLPAMG 222
Cdd:COG0573  161 IVLAIMILPTITSLsrdalRAVPRSLREAALALGATRWETIRKVVLPAARSGIIAAVILGLGRALG 226
PRK10952 PRK10952
proline/glycine betaine ABC transporter permease ProW;
70-230 8.89e-05

proline/glycine betaine ABC transporter permease ProW;


Pssm-ID: 236805  Cd Length: 355  Bit Score: 43.54  E-value: 8.89e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289  70 SLNMAVIATFFCLVIGYPFAFILARLP---KRIQPLMLFLLIVPFWTnsliriyglkvflstkgYLNDFLLWVGVIDKPl 146
Cdd:PRK10952 149 TLALVLTALLFCIVIGLPLGIWLARSPraaKIIRPLLDAMQTTPAFV-----------------YLVPIVMLFGIGNVP- 210

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289 147 kimytpeAVILGLIYILLPFMVMPLYSsIEKLDKSYIEAAKDLGANKFQRFVKIIIPLTMPGIIAGCLLVLLPAMGLFYV 226
Cdd:PRK10952 211 -------GVVVTIIFALPPIVRLTILG-INQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVI 282


                 ....
gi 491046289 227 ADLM 230
Cdd:PRK10952 283 ASMI 286
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 152-212 7.33e-04

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 40.04  E-value: 7.33e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 491046289 152 PEAVILGL-IYILLPfMVMPLYSSIEKLDKSYIEAAKDLGANKFQRFVKIIIPLTMPGIIAG 212
Cdd:COG1174   82 PAPAIIALvLYALLP-ILRNTYTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPVILAG 142
3a0107s02c TIGR00974
phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of ...
 154-222 1.17e-03

phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273373  Cd Length: 271  Bit Score: 39.53  E-value: 1.17e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 491046289  154 AVILGLIYILLPFMVMPLYSSIEKLDKSYIEAAKDLGANKFQRFVKIIIPLTMPGIIAGCLLVLLPAMG 222
Cdd:TIGR00974 130 AGALALALLILPVIIRTTEEALKAVPKDLREASLALGATKWQTIFKVVLPAALPGILTGIILSIARAAG 198
phosphate_pstC TIGR02138
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ...
 163-241 1.81e-03

phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273992 [Multi-domain]  Cd Length: 295  Bit Score: 39.17  E-value: 1.81e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289  163 LLPFMVMPLYSSIEKLDKSYIEAAKDLGANKFQRFVKIIIPLTMPGIIAGCLLVLLPAMG-LFYVADLMGGAKNLLIGNV 241
Cdd:TIGR02138 162 ILPTIASISRDALRAVPRSYKEASYALGATKWETIRRVILPAARSGIVGAVVLGLGRALGeTMAVTMVIGNVFPISPLSL 241
PhnE TIGR01097
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ...
 18-211 2.32e-03

phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions]


Pssm-ID: 273441 [Multi-domain]  Cd Length: 250  Bit Score: 38.68  E-value: 2.32e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289   18 VAWLLLFVFLpnimiIGTSFLTRSDTNLVDLVFTWDNYIRLSDPM----------YAEVMLHSLNMAVIATFFCLVIGYP 87
Cdd:TIGR01097   6 RIWLLALLVA-----LYVWAFALLGFDLARLLAGPGQMADLLGRMfppdwsylprILKALLETLAMAILGTVLAAVLAVP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289   88 FAFILAR--LPKR-IQPLMLFLLivpfwtnSLIR-----IYGLKvflstkgylndFLLWVGVidkplkimyTPEAVILGL 159
Cdd:TIGR01097  81 LALLAARniTPSPwLYGLARLLL-------NFLRaipelVWALI-----------FVAAVGL---------GPFAGVLAL 133

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 491046289  160 IYILLPFMVMPLYSSIEKLDKSYIEAAKDLGANKFQRFVKIIIPLTMPGIIA 211
Cdd:TIGR01097 134 AFHTVGFLGKLFAEAIEEVDPGPVEALRATGASKLQVIRYGVLPQVLPQFLS 185
cysW PRK11602
sulfate/thiosulfate ABC transporter permease CysW;
12-233 4.41e-03

sulfate/thiosulfate ABC transporter permease CysW;


Pssm-ID: 183225  Cd Length: 283  Bit Score: 37.81  E-value: 4.41e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289  12 VIITGVVAWLLLFVfLPNIMIIGTSFLTrsdtnlvDLVFTWDNyirLSDPMyaevMLHS----LNMAVIATFFCLVIGYP 87
Cdd:PRK11602  22 LIGIGMLVSAFILV-VPMIYIFVQAFSK-------GLMPVLQN---LADPD----MLHAiwltVLIALIAVPVNLVFGIL 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289  88 FAFILARLPKRIQPLMLFLLIVPFWTNSLIRIYGLKVFLSTKGYLNDfllWVGVIDkpLKIMYTPEAVILGLIYILLPFM 167
Cdd:PRK11602  87 LAWLVTRFNFPGRQLLLTLLDIPFAVSPVVAGLVYLLFYGSNGPLGG---WLDEHN--LQLMFSWPGMVLVTIFVTCPFV 161

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 491046289 168 VMPLYSSIEKLDKSYIEAAKDLGANKFQRFVKIIIPLTMPGIIAGCLLVLLPAMGLFYVADLMGGA 233
Cdd:PRK11602 162 VRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEFGAVSVVSGS 227
PRK10592 PRK10592
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 173-215 5.36e-03

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182574  Cd Length: 281  Bit Score: 37.52  E-value: 5.36e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 491046289 173 SSIEKLDKSYIEAAKDLGANKFQRFVKIIIPLTMPGIIAGCLL 215
Cdd:PRK10592 161 SRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLL 203
PhnE COG3639
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport ...
 61-211 5.47e-03

ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 442856 [Multi-domain]  Cd Length: 244  Bit Score: 37.37  E-value: 5.47e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491046289  61 PMYAEVMLHSLNMAVIATFFCLVIGYPFAFILARL---PKRIQPLMLFLLivpfwtnSLIR-----IYGLKvflstkgyl 132
Cdd:COG3639   47 PDLLSALLETLAIALLGTLLGAVLALPLAFLAARNlapNPWVRLLARRLL-------NVLRaipelVWALI--------- 110

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 491046289 133 ndFLLWVGVidkplkimyTPEAVILGLIYILLPFMVMPLYSSIEKLDKSYIEAAKDLGANKFQRFVKIIIPLTMPGIIA 211
Cdd:COG3639  111 --FVAAVGL---------GPFAGVLALAIHTIGFLGKLFAEAIEEIDPGPVEALRATGASRLQVIRYGVLPQVLPQFLS 178
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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