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Conserved domains on  [gi|491000889|ref|WP_004862611|]
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MULTISPECIES: putative selenium delivery protein YdfZ [Raoultella]

Protein Classification

putative selenium delivery protein YdfZ( domain architecture ID 10022366)

putative selenium delivery protein YdfZ

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YdfZ_fam TIGR03318
putative selenium-binding protein YdfZ; This small protein has a very limited distribution, ...
 1-65 5.72e-36

putative selenium-binding protein YdfZ; This small protein has a very limited distribution, being found so far only among some gamma-Proteobacteria. The member from Escherichia coli was shown to bind selenium in the absence of a working SelD-dependent selenium incorporation system. Note that while the E. coli member contains a single Cys residue, a likely selenium binding site, some other members of this protein family contain two Cys residues or none. [Unknown function, General]


:

Pssm-ID: 132361  Cd Length: 65  Bit Score: 114.93  E-value: 5.72e-36
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 491000889   1 MKTYDRNRNAISTGSMVMVAGNGVTGVIKAIHGEGKTAEQLRRADCVEIEGCEGLYCPMSLIRLG 65
Cdd:TIGR03318  1 MKTYDRNRNAITTGSRVMIAGTGHTGVIKAIHTEGLTAEQARREKCVELEGCEERFAPLDLIRLG 65
 
Name Accession Description Interval E-value
YdfZ_fam TIGR03318
putative selenium-binding protein YdfZ; This small protein has a very limited distribution, ...
 1-65 5.72e-36

putative selenium-binding protein YdfZ; This small protein has a very limited distribution, being found so far only among some gamma-Proteobacteria. The member from Escherichia coli was shown to bind selenium in the absence of a working SelD-dependent selenium incorporation system. Note that while the E. coli member contains a single Cys residue, a likely selenium binding site, some other members of this protein family contain two Cys residues or none. [Unknown function, General]


Pssm-ID: 132361  Cd Length: 65  Bit Score: 114.93  E-value: 5.72e-36
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 491000889   1 MKTYDRNRNAISTGSMVMVAGNGVTGVIKAIHGEGKTAEQLRRADCVEIEGCEGLYCPMSLIRLG 65
Cdd:TIGR03318  1 MKTYDRNRNAITTGSRVMIAGTGHTGVIKAIHTEGLTAEQARREKCVELEGCEERFAPLDLIRLG 65
YdfZ pfam14001
YdfZ protein; This family of proteins is functionally uncharacterized. This family of proteins ...
 2-65 1.83e-33

YdfZ protein; This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 70 amino acids in length. There is a conserved YDRNRN sequence motif. The E. coli protein has been shown to bind selenium.


Pssm-ID: 404820  Cd Length: 64  Bit Score: 108.68  E-value: 1.83e-33
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 491000889   2 KTYDRNRNAISTGSMVMVAGNGVTGVIKAIHGEGKTAEQLRRADCVEIEGCEGLYCPMSLIRLG 65
Cdd:pfam14001  1 KTYDRNRNAITTGQRVMIAGTGLTGVIKAIHTEGLTAEQARRAKCVELEGVEERFAPIELIRLG 64
 
Name Accession Description Interval E-value
YdfZ_fam TIGR03318
putative selenium-binding protein YdfZ; This small protein has a very limited distribution, ...
 1-65 5.72e-36

putative selenium-binding protein YdfZ; This small protein has a very limited distribution, being found so far only among some gamma-Proteobacteria. The member from Escherichia coli was shown to bind selenium in the absence of a working SelD-dependent selenium incorporation system. Note that while the E. coli member contains a single Cys residue, a likely selenium binding site, some other members of this protein family contain two Cys residues or none. [Unknown function, General]


Pssm-ID: 132361  Cd Length: 65  Bit Score: 114.93  E-value: 5.72e-36
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 491000889   1 MKTYDRNRNAISTGSMVMVAGNGVTGVIKAIHGEGKTAEQLRRADCVEIEGCEGLYCPMSLIRLG 65
Cdd:TIGR03318  1 MKTYDRNRNAITTGSRVMIAGTGHTGVIKAIHTEGLTAEQARREKCVELEGCEERFAPLDLIRLG 65
YdfZ pfam14001
YdfZ protein; This family of proteins is functionally uncharacterized. This family of proteins ...
 2-65 1.83e-33

YdfZ protein; This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 70 amino acids in length. There is a conserved YDRNRN sequence motif. The E. coli protein has been shown to bind selenium.


Pssm-ID: 404820  Cd Length: 64  Bit Score: 108.68  E-value: 1.83e-33
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 491000889   2 KTYDRNRNAISTGSMVMVAGNGVTGVIKAIHGEGKTAEQLRRADCVEIEGCEGLYCPMSLIRLG 65
Cdd:pfam14001  1 KTYDRNRNAITTGQRVMIAGTGLTGVIKAIHTEGLTAEQARRAKCVELEGVEERFAPIELIRLG 64
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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