|
Name |
Accession |
Description |
Interval |
E-value |
| DppB |
COG0601 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
1-317 |
1.91e-108 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440366 [Multi-domain] Cd Length: 314 Bit Score: 318.16 E-value: 1.91e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490997496 1 MINTLLYRILLAIPTMLGVALICFMLVQIAPGDPLVSVMPPDASEALRQTLMQAYGFDKPLPLQFVHWLWRALHGDLGMS 80
Cdd:COG0601 1 MLRYILRRLLQAIPVLLGVSTLVFLLLRLLPGDPAAALLGPRATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGTS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490997496 81 VATGRPVLGEVLTAVSYSLRLALLATIIGFVLGSLFGFVAGYFRNSIVDRLASLLSVFGVSVPHYWLGMLLVIVFSVKFS 160
Cdd:COG0601 81 FVYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAVKLG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490997496 161 LLPATGGGPIGEIGWQWdrehLQFMLLPAITLSVIPTGIIARTVRSQVADILSQEFIVGLRARGLNESRIFL-HVVKNAA 239
Cdd:COG0601 161 WLPVSGRVSPWEDFLDA----LRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLrHALRNAL 236
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 490997496 240 PTALAVMGLQVGYLMGGSILVETVFSWPGTGLLLNTAIFQRDLPLLQGTIWVLALFFVLLNLLVDILQTTLDPRIKRS 317
Cdd:COG0601 237 IPVVTVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRIRLG 314
|
|
| PRK15081 |
PRK15081 |
glutathione ABC transporter permease GsiC; Provisional |
1-315 |
1.43e-62 |
|
glutathione ABC transporter permease GsiC; Provisional
Pssm-ID: 185039 [Multi-domain] Cd Length: 306 Bit Score: 200.71 E-value: 1.43e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490997496 1 MINTLLYRILLAIPTMLGVALICFMLVQIAPGDPLVSVMPPDASEALRQTLMQAYGFDKPLPLQFVHWLWRALHGDLGMS 80
Cdd:PRK15081 1 MLNYVIKRLLGLIPTLLIVAVLVFLFVHLLPGDPARLAAGPEADAQVVALVRQQLGLDQPLPHQFWHYISNALQGDFGTS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490997496 81 VATGRPVLGEVLTAVSYSLRLALLATIIGFVLGSLFGFVAGYFRNSIVDRLASLLSVFGVSVPHYWLGMLLVIVFSVKFS 160
Cdd:PRK15081 81 MVSRRPVSEEIASRFMPTLWLTITSMVWAVIFGMAIGIASAVWRNRWPDRLGMTLAVSGISFPAFALGMLLMQVFSVELG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490997496 161 LLPATGGGpigeiGWqwdrehlQFMLLPAITLSVIPTGIIARTVRSQVADILSQEFIVGLRARGLNESRIFL-HVVKNAA 239
Cdd:PRK15081 161 WLPTVGAD-----SW-------QHYILPSLTLGAAVAAVMARFTRASFVEVLSEDYMRTARAKGVSETWVVLkHGLRNAM 228
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490997496 240 PTALAVMGLQVGYLMGGSILVETVFSWPGTGLLLNTAIFQRDLPLLQGTIWVLALFFVLLNLLVDILQTTLDPRIK 315
Cdd:PRK15081 229 IPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEVLLFSLEFILINLVVDVLYAAINPAIR 304
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
113-316 |
1.03e-20 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 87.35 E-value: 1.03e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490997496 113 GSLFGFVAGYFRNSIVDRLASLLSVFGVSVPHYWLGMLLVIVFSVKfsllpatgggpigeigwqwdreHLQFMLLPAITL 192
Cdd:pfam00528 1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILS----------------------ILGHGILPAIIL 58
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490997496 193 SVIPTGIIARTVRSQVADILSQEFIVGLRARGLNESRIFL-HVVKNAAPTALAVMGLQVGYLMGGSILVETVFSWPGTGL 271
Cdd:pfam00528 59 ALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRkIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGL 138
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 490997496 272 LLNTAIFQRDLPLLQGTIWVLALFFVLLNLLVDILQTTLDPRIKR 316
Cdd:pfam00528 139 LLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPRVRK 183
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
97-279 |
7.72e-13 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 66.15 E-value: 7.72e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490997496 97 YSLRLALLATIIGFVLGSLFGFVAGYFRNsIVDRLASLLSVFGVSVPHYWLGMLLVIVFSVKFSLLpatgggpigeigwq 176
Cdd:cd06261 3 NTLLLALIATLLALVLGLLLGIILARKRG-KLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWG-------------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490997496 177 wdreHLQFMLLPAITLSVIPTGIIARTVRSQVADILSQEFIVGLRARGLNESRIF-LHVVKNAAPTALAVMGLQVGYLMG 255
Cdd:cd06261 68 ----ILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFrRIILPLALPPILTGLVLAFARALG 143
|
170 180
....*....|....*....|....*...
gi 490997496 256 GSILVETVFS----WPGTGLLLNTAIFQ 279
Cdd:cd06261 144 EFALVSFLGGgeapGPGTGLLLIFAILF 171
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| DppB |
COG0601 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
1-317 |
1.91e-108 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440366 [Multi-domain] Cd Length: 314 Bit Score: 318.16 E-value: 1.91e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490997496 1 MINTLLYRILLAIPTMLGVALICFMLVQIAPGDPLVSVMPPDASEALRQTLMQAYGFDKPLPLQFVHWLWRALHGDLGMS 80
Cdd:COG0601 1 MLRYILRRLLQAIPVLLGVSTLVFLLLRLLPGDPAAALLGPRATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGTS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490997496 81 VATGRPVLGEVLTAVSYSLRLALLATIIGFVLGSLFGFVAGYFRNSIVDRLASLLSVFGVSVPHYWLGMLLVIVFSVKFS 160
Cdd:COG0601 81 FVYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAVKLG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490997496 161 LLPATGGGPIGEIGWQWdrehLQFMLLPAITLSVIPTGIIARTVRSQVADILSQEFIVGLRARGLNESRIFL-HVVKNAA 239
Cdd:COG0601 161 WLPVSGRVSPWEDFLDA----LRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLrHALRNAL 236
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 490997496 240 PTALAVMGLQVGYLMGGSILVETVFSWPGTGLLLNTAIFQRDLPLLQGTIWVLALFFVLLNLLVDILQTTLDPRIKRS 317
Cdd:COG0601 237 IPVVTVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRIRLG 314
|
|
| PRK15081 |
PRK15081 |
glutathione ABC transporter permease GsiC; Provisional |
1-315 |
1.43e-62 |
|
glutathione ABC transporter permease GsiC; Provisional
Pssm-ID: 185039 [Multi-domain] Cd Length: 306 Bit Score: 200.71 E-value: 1.43e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490997496 1 MINTLLYRILLAIPTMLGVALICFMLVQIAPGDPLVSVMPPDASEALRQTLMQAYGFDKPLPLQFVHWLWRALHGDLGMS 80
Cdd:PRK15081 1 MLNYVIKRLLGLIPTLLIVAVLVFLFVHLLPGDPARLAAGPEADAQVVALVRQQLGLDQPLPHQFWHYISNALQGDFGTS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490997496 81 VATGRPVLGEVLTAVSYSLRLALLATIIGFVLGSLFGFVAGYFRNSIVDRLASLLSVFGVSVPHYWLGMLLVIVFSVKFS 160
Cdd:PRK15081 81 MVSRRPVSEEIASRFMPTLWLTITSMVWAVIFGMAIGIASAVWRNRWPDRLGMTLAVSGISFPAFALGMLLMQVFSVELG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490997496 161 LLPATGGGpigeiGWqwdrehlQFMLLPAITLSVIPTGIIARTVRSQVADILSQEFIVGLRARGLNESRIFL-HVVKNAA 239
Cdd:PRK15081 161 WLPTVGAD-----SW-------QHYILPSLTLGAAVAAVMARFTRASFVEVLSEDYMRTARAKGVSETWVVLkHGLRNAM 228
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490997496 240 PTALAVMGLQVGYLMGGSILVETVFSWPGTGLLLNTAIFQRDLPLLQGTIWVLALFFVLLNLLVDILQTTLDPRIK 315
Cdd:PRK15081 229 IPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEVLLFSLEFILINLVVDVLYAAINPAIR 304
|
|
| PRK10352 |
PRK10352 |
nickel transporter permease NikB; Provisional |
1-317 |
3.18e-61 |
|
nickel transporter permease NikB; Provisional
Pssm-ID: 182400 [Multi-domain] Cd Length: 314 Bit Score: 197.61 E-value: 3.18e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490997496 1 MINTLLYRILLAIPTMLGVALICFMLVQIAPGDPL-----VSVMPP--DASEALRQTLmqayGFDKPLPLQFVHWLWRAL 73
Cdd:PRK10352 1 MLRYILRRLLLLIPMLLAASVIIFLMLRLGTGDPAldylrLSNLPPtpEMLASTRTML----GLDQPLYVQYGTWLWKAL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490997496 74 HGDLGMSVATGRPVLGEVLTAVSYSLRLALLATIIGFVLGSLFGFVAGYFRNSIVDRLASLLSVFGVSVPHYWLGMLLVI 153
Cdd:PRK10352 77 HLDFGISFATQRPVLDDLLNFLPATLELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVM 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490997496 154 VFSVKFSLLPATGGGpigeiGWqwdrehlQFMLLPAITLSVIPTGIIARTVRSQVADILSQEFIVGLRARGLNESRIFL- 232
Cdd:PRK10352 157 AFSVYLQWLPAMGYG-----GW-------QHIILPAVSIAFMSLAINARLLRASMLEVAGQRHVTWARLRGLSERQVERr 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490997496 233 HVVKNAAPTALAVMGLQVGYLMGGSILVETVFSWPGTGLLLNTAIFQRDLPLLQGTIWVLALFFVLLNLLVDILQTTLDP 312
Cdd:PRK10352 225 HILRNASLPMITAVGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLMMVVVFVVCNLIVDLLNAALDP 304
|
....*
gi 490997496 313 RIKRS 317
Cdd:PRK10352 305 RIRRH 309
|
|
| PRK10914 |
PRK10914 |
dipeptide ABC transporter permease DppB; |
1-316 |
6.08e-53 |
|
dipeptide ABC transporter permease DppB;
Pssm-ID: 182834 [Multi-domain] Cd Length: 339 Bit Score: 176.93 E-value: 6.08e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490997496 1 MINTLLYRILLAIPTMLGVALICFMLVQIAPGDPLVSVMPPDASEALRQT-LMQAYGFDKPLPLQFVHWLWRALHGDLGM 79
Cdd:PRK10914 1 MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGISPERHAqLLAELGLDKPMWQQYLHYIWGVMHGDLGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490997496 80 SVATGRPVLGEVLTAVSYSLRLALLATIIGFVLGSLFGFVAGYFRNSIVDRLASLLSVFGVSVPHYWLGMLLVIVFSVKF 159
Cdd:PRK10914 81 SLKSRIPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHW 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490997496 160 SL----------------LPATGGGPIGEIGWQWD---REHLQFMLLPAITLSVIPTGIIARTVRSQVADILSQEFIVGL 220
Cdd:PRK10914 161 NLtpvsgrvsdmvflddsNPLTGFMLIDTAIWGEDgnfIDAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTA 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490997496 221 RARGLNESR-IFLHVVKNAAPTALAVMGLQVGYLMGGSILVETVFSWPGTGLLLNTAIFQRDLPLLQGTIWVLALFFVLL 299
Cdd:PRK10914 241 RAKGLTRMRvIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILV 320
|
330
....*....|....*..
gi 490997496 300 NLLVDILQTTLDPRIKR 316
Cdd:PRK10914 321 NLLVDLLYGVVNPRIRH 337
|
|
| oppB |
PRK09471 |
oligopeptide ABC transporter permease OppB; |
1-315 |
8.68e-35 |
|
oligopeptide ABC transporter permease OppB;
Pssm-ID: 181886 [Multi-domain] Cd Length: 306 Bit Score: 128.26 E-value: 8.68e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490997496 1 MINTLLYRILLAIPTMLGVALICFMLVQIAPGDPLVS--VMPPDaseaLRQTLMQAYGFDKPLPLQFVHWLWRALHGDLG 78
Cdd:PRK09471 1 MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTGerTLPPE----VMANIEAKYHLNDPIMTQYFSYLKQLAHGDFG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490997496 79 MSVATGRPVLGE-VLTAVSYSLRLALLATIIGFVLGSLFGFVAGYFRNSIVDRLASLLSVFGVSVPHYWLGMLLVIVFSV 157
Cdd:PRK09471 77 PSFKYKDYSVNDlVASSFPVSAKLGAAAFFLAVILGVSAGVIAALKQNTKWDYTVMGFAMTGVVIPSFVVAPLLVLIFAI 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490997496 158 KFSLLPATGggpigeigwqWDREHLQFMLLPAITLSVIPTGIIARTVRSQVADILSQEFIVGLRARGLNESRIFL-HVVK 236
Cdd:PRK09471 157 TLHWLPGGG----------WNGGALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILrHALK 226
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490997496 237 NAAPTALAVMGLQVGYLMGGSILVETVFSWPGTGLLLNTAIFQRDLPLLQGTIWVLALFFVLLNLLVDILQTTLDPRIK 315
Cdd:PRK09471 227 PALLPVLSYMGPAFVGIITGSMVIETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKIR 305
|
|
| PRK15110 |
PRK15110 |
peptide ABC transporter permease SapB; |
1-312 |
4.08e-28 |
|
peptide ABC transporter permease SapB;
Pssm-ID: 185065 [Multi-domain] Cd Length: 321 Bit Score: 110.93 E-value: 4.08e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490997496 1 MINTLLYRILLAIPTMLGVALICFMLVQIAPGDPLVSVMPPDAsealrqtlmqaygfdkplplqFVHWLWRALHGDLGMS 80
Cdd:PRK15110 1 MIIFTLRRLLLLIVTLFLLTLVGFSLSYFTPHAPLQGASLWDA---------------------WVFWFNGLLHWDFGVS 59
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490997496 81 VATGRPV---LGEVLTAvsySLRLALLATIIGFVLGSLFGFVAGYFRNSIVDRLASLLSVFGVSVPHYWLGMLLVIVFSV 157
Cdd:PRK15110 60 SINGQPIseqLKEVFPA---TMELCILAFGFALLVGIPVGIIAGVTRHKWQDNLISALALLGFSIPVFWLALLLTLFFSL 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490997496 158 KFSLLPATGG----GPIGEI-------GW----QWDREH----LQFMLLPAITLSVIPTGIIARTVRSQVADILSQEFIV 218
Cdd:PRK15110 137 TLGWLPVSGRfdllYEVKPVtgfalidAWlsdsPWRDEMimsaIRHMILPVITLAVAPTTEVIRLMRISTIEVYDQNYVK 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490997496 219 GLRARGLNESRIFL-HVVKNAAPTALAVMGLQVGYLMGGSILVETVFSWPGTGLLLNTAIFQRDLPLLQGTIWVLALFFV 297
Cdd:PRK15110 217 AAATRGLSRFTILRrHVLHNALPPVIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLINAIRQQDYAAISAGVMVVGSLVI 296
|
330
....*....|....*
gi 490997496 298 LLNLLVDILQTTLDP 312
Cdd:PRK15110 297 IVNVLSDILGAMANP 311
|
|
| PRK15133 |
PRK15133 |
microcin C ABC transporter permease YejB; Provisional |
1-314 |
2.63e-24 |
|
microcin C ABC transporter permease YejB; Provisional
Pssm-ID: 185087 [Multi-domain] Cd Length: 364 Bit Score: 101.36 E-value: 2.63e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490997496 1 MINTLLYRILLAIPTMLGVALICFMLVQIAPGDPL-----------VSVMPPDASEALRQT------------------- 50
Cdd:PRK15133 1 MGAYLIRRLLLVIPTLWAIITINFFIVQIAPGGPVdqaiaaiefgqAGGLPGAGGEGVRAShaqtgvgnisdsnyrggrg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490997496 51 --------LMQAYGFDKPLPLQFVHWLWRALHGDLGMSVATGRPVLGEVLTAVSYSLRLALLATIIGFVLGSLFGFVAGY 122
Cdd:PRK15133 81 ldpeviaeITHRYGFDKPLHERYFKMLWDYIRFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490997496 123 FRNSIVDRLASLLSVFGVSVPHYWLGMLLVIVF---------------SVKFSLLPATGggPIGEIGWQwdrehlqfmll 187
Cdd:PRK15133 161 RNGSRFDVWSSAFIIIGYAIPAFLFAILLIVFFaggsyfdlfplrglvSANFDSLPWYQ--KITDYLWH----------- 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490997496 188 paITLSVIPTGI-----IARTVRSQVADILSQEFIVGLRARGLNESRI-FLHVVKNAapTALAVMGLQVGYL---MGGSI 258
Cdd:PRK15133 228 --ITLPVLATVIggfaaLTMLTKNSFLDEIRKQYVVTARAKGVSEKNIlWKHVFRNA--MLLVIAGFPATFIsmfFTGSL 303
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 490997496 259 LVETVFSWPGTGLLLNTAIFQRDLPLLQGTIWVLALFFVLLNLLVDILQTTLDPRI 314
Cdd:PRK15133 304 LIEVMFSLNGLGLLGYEATVSRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVDPRI 359
|
|
| YejB |
COG4174 |
ABC-type microcin C transport system, permease component YejB [Secondary metabolites ... |
1-314 |
3.01e-22 |
|
ABC-type microcin C transport system, permease component YejB [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443333 [Multi-domain] Cd Length: 363 Bit Score: 95.25 E-value: 3.01e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490997496 1 MINTLLYRILLAIPTMLGVALICFMLVQIAPGDPL-------------------------VSVMPPDASEALR------- 48
Cdd:COG4174 1 MGAYILRRLLLMIPTLLGIMLINFVIVQFAPGGPVeqviaqlqgtgggatgrisggggdaGGGAAAGGGSKYRgargldp 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490997496 49 ---QTLMQAYGFDKPLPLQFVHWLWRALHGDLGMSVATGRPVLGEVLTAVSYSLRLALLATIIGFV----LGslfgfVAG 121
Cdd:COG4174 81 efiAELEKQYGFDKPAHERFLLMLKNYLRFDFGESYFRDISVIDLILEKLPVSISLGLWSTLLTYLisipLG-----IRK 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490997496 122 YFRN-SIVDRLASLLSVFGVSVPHYWLGMLLVIVFS--VKFSLLPATG-----------GGPIGEIGWqwdreHlqfMLL 187
Cdd:COG4174 156 AVRDgSRFDVWTSTVIIVGYAIPGFLFAILLIVLFAggSYFDWFPLRGltsdnwdqlswWGKILDYLW-----H---LTL 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490997496 188 PaITLSVIP--TGIIARTVRSQVADILSQeFIVGLRARGLNESRI-FLHVVKNAA-------PTALavmglqVGYLMGGS 257
Cdd:COG4174 228 P-VTAMVIGgfATLTLLTKNSFLDEIRKQ-YVLTARAKGLSERRVlYGHVFRNAMliviagfPAAF------IGAFFTGS 299
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 490997496 258 ILVETVFSWPGTGLLLNTAIFQRDLPLLQGTIWVLALFFVLLNLLVDILQTTLDPRI 314
Cdd:COG4174 300 LLIETIFSLDGLGLLGFEAVVNRDYPVVFGTLYIFTLIGLVLKLISDLTYVLVDPRI 356
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
113-316 |
1.03e-20 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 87.35 E-value: 1.03e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490997496 113 GSLFGFVAGYFRNSIVDRLASLLSVFGVSVPHYWLGMLLVIVFSVKfsllpatgggpigeigwqwdreHLQFMLLPAITL 192
Cdd:pfam00528 1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILS----------------------ILGHGILPAIIL 58
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490997496 193 SVIPTGIIARTVRSQVADILSQEFIVGLRARGLNESRIFL-HVVKNAAPTALAVMGLQVGYLMGGSILVETVFSWPGTGL 271
Cdd:pfam00528 59 ALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRkIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGL 138
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 490997496 272 LLNTAIFQRDLPLLQGTIWVLALFFVLLNLLVDILQTTLDPRIKR 316
Cdd:pfam00528 139 LLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPRVRK 183
|
|
| DppC |
COG1173 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
84-265 |
2.54e-14 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440786 [Multi-domain] Cd Length: 275 Bit Score: 71.68 E-value: 2.54e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490997496 84 GRPVLGEVLTAVSYSLRLALLATIIGFVLGSLFGFVAGYFRnSIVDRLASLLSVFGVSVPhywlGMLLVIVFSVKFsllp 163
Cdd:COG1173 67 GRDVLSRLLYGARISLLVGLLAVLIALVIGVLLGLLAGYFG-GWVDAVLMRLVDVLLAFP----SLLLAIALVAVL---- 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490997496 164 atGGGPigeigwqwdrehlqFMLLPAITLSVIPTgiIARTVRSQVADILSQEFIVGLRARGLNESRI-FLHVVKNAAPTA 242
Cdd:COG1173 138 --GPGL--------------LNVILALGLTGWPG--YARLVRAQVLSLREREYVEAARALGASPLRIiFRHILPNVLPPL 199
|
170 180
....*....|....*....|...
gi 490997496 243 LAVMGLQVGYlmggSILVETVFS 265
Cdd:COG1173 200 IVQATLGIAS----AILAEAGLS 218
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
97-279 |
7.72e-13 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 66.15 E-value: 7.72e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490997496 97 YSLRLALLATIIGFVLGSLFGFVAGYFRNsIVDRLASLLSVFGVSVPHYWLGMLLVIVFSVKFSLLpatgggpigeigwq 176
Cdd:cd06261 3 NTLLLALIATLLALVLGLLLGIILARKRG-KLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWG-------------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490997496 177 wdreHLQFMLLPAITLSVIPTGIIARTVRSQVADILSQEFIVGLRARGLNESRIF-LHVVKNAAPTALAVMGLQVGYLMG 255
Cdd:cd06261 68 ----ILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFrRIILPLALPPILTGLVLAFARALG 143
|
170 180
....*....|....*....|....*...
gi 490997496 256 GSILVETVFS----WPGTGLLLNTAIFQ 279
Cdd:cd06261 144 EFALVSFLGGgeapGPGTGLLLIFAILF 171
|
|
| BPD_transp_1_N |
pfam19300 |
Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal ... |
1-102 |
3.98e-09 |
|
Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal transmembrane domain of the Binding-protein-dependent transport system inner membrane component.
Pssm-ID: 437132 [Multi-domain] Cd Length: 114 Bit Score: 53.76 E-value: 3.98e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490997496 1 MINTLLYRILLAIPTMLGVALICFMLVQIAPGDP-LVS---VMPPDASEALRQTLmqayGFDKPLPLQFVHWLWRALHGD 76
Cdd:pfam19300 1 MLRFLVRRTLGAVVILLIISAVTFFLFYAIPRDPaRLAcgkNCTPETLALIRHNL----GLDKPIPVQYWHFLSGIFAGR 76
|
90 100 110
....*....|....*....|....*....|....*...
gi 490997496 77 ------------LGMSVATGRPVLGEVLTAVSYSLRLA 102
Cdd:pfam19300 77 dfgavghcpapcLGYSFANNEPVWDTIMDRFPTTLSLA 114
|
|
| |
