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Conserved domains on  [gi|490653353|ref|WP_004518346|]
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MULTISPECIES: 50S ribosomal protein L39e [Haloarcula]

Protein Classification

50S ribosomal protein L39e( domain architecture ID 10011651)

50S ribosomal protein L39e

Gene Ontology:  GO:0006412|GO:0005840|GO:0003735
PubMed:  24524803

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rpl39e PRK01242
50S ribosomal protein L39e; Validated
 1-50 4.78e-17

50S ribosomal protein L39e; Validated


:

Pssm-ID: 179261  Cd Length: 50  Bit Score: 66.17  E-value: 4.78e-17
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 490653353  1 MGKKSKATKKRLAKLDNQNSRVPAWVMLKTDREVQRNHKRRHWRRNDTDE 50
Cdd:PRK01242  1 MRNKPLGKKLRLAKALKQNRRVPAWVIVKTNRRVRRHPKRRHWRRSKLKV 50
 
Name Accession Description Interval E-value
rpl39e PRK01242
50S ribosomal protein L39e; Validated
 1-50 4.78e-17

50S ribosomal protein L39e; Validated


Pssm-ID: 179261  Cd Length: 50  Bit Score: 66.17  E-value: 4.78e-17
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 490653353  1 MGKKSKATKKRLAKLDNQNSRVPAWVMLKTDREVQRNHKRRHWRRNDTDE 50
Cdd:PRK01242  1 MRNKPLGKKLRLAKALKQNRRVPAWVIVKTNRRVRRHPKRRHWRRSKLKV 50
RPL39 COG2167
Ribosomal protein L39E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 1-50 1.69e-15

Ribosomal protein L39E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L39E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441770  Cd Length: 51  Bit Score: 62.21  E-value: 1.69e-15
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 490653353  1 MGKKSKATKKRLAKLDNQNSRVPAWVMLKTDREVQRNHKRRHWRRNDTDE 50
Cdd:COG2167   2 ARNKPLGKKLRLAKALKQNRRVPAWVIVKTNRKVRRNPKRRNWRRSKLKV 51
Ribosomal_L39 pfam00832
Ribosomal L39 protein;
9-47 4.18e-11

Ribosomal L39 protein;


Pssm-ID: 425894  Cd Length: 41  Bit Score: 51.04  E-value: 4.18e-11
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 490653353   9 KKRLAKLDNQNSRVPAWVMLKTDREVQRNHKRRHWRRND 47
Cdd:pfam00832  1 KLRLAKALKQNRPVPAWVRLKTDRKVRYNPKRRHWRRTK 39
 
Name Accession Description Interval E-value
rpl39e PRK01242
50S ribosomal protein L39e; Validated
 1-50 4.78e-17

50S ribosomal protein L39e; Validated


Pssm-ID: 179261  Cd Length: 50  Bit Score: 66.17  E-value: 4.78e-17
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 490653353  1 MGKKSKATKKRLAKLDNQNSRVPAWVMLKTDREVQRNHKRRHWRRNDTDE 50
Cdd:PRK01242  1 MRNKPLGKKLRLAKALKQNRRVPAWVIVKTNRRVRRHPKRRHWRRSKLKV 50
RPL39 COG2167
Ribosomal protein L39E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 1-50 1.69e-15

Ribosomal protein L39E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L39E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441770  Cd Length: 51  Bit Score: 62.21  E-value: 1.69e-15
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 490653353  1 MGKKSKATKKRLAKLDNQNSRVPAWVMLKTDREVQRNHKRRHWRRNDTDE 50
Cdd:COG2167   2 ARNKPLGKKLRLAKALKQNRRVPAWVIVKTNRKVRRNPKRRNWRRSKLKV 51
Ribosomal_L39 pfam00832
Ribosomal L39 protein;
9-47 4.18e-11

Ribosomal L39 protein;


Pssm-ID: 425894  Cd Length: 41  Bit Score: 51.04  E-value: 4.18e-11
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 490653353   9 KKRLAKLDNQNSRVPAWVMLKTDREVQRNHKRRHWRRND 47
Cdd:pfam00832  1 KLRLAKALKQNRPVPAWVRLKTDRKVRYNPKRRHWRRTK 39
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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