|
Name |
Accession |
Description |
Interval |
E-value |
| glnP |
PRK09494 |
glutamine ABC transporter permease protein; Reviewed |
1-219 |
2.14e-141 |
|
glutamine ABC transporter permease protein; Reviewed
Pssm-ID: 181907 [Multi-domain] Cd Length: 219 Bit Score: 393.65 E-value: 2.14e-141
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523047 1 MQFDWSAIWPAIPLLLEGAKMTLWISVLGLVGGLIIGLVAGFARSFGGWIANHIALVFIEIIRGTPIVVQVMFIYFALPM 80
Cdd:PRK09494 1 MQFDWSAIWPAIPLLLEGAKMTLWISVLGLAGGLVIGLLAGFARAYGGWIANHIALVFIELIRGTPIVVQVMFIYFALPM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523047 81 AFNDLRIDPFTAAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSKRETIRHVILPLALRRMLPPLGNQWIISIK 160
Cdd:PRK09494 81 AFNDLRIDPFTAAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSRRETLRYVIGPLALRRMLPPLGNQWIISIK 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 490523047 161 DTSLFIVIGVAELTRQGQEIIAGNFRALEIWSAVAVIYLIITLVLSFVLRRLERRMKIL 219
Cdd:PRK09494 161 DTSLFIVIGVAELTRQGQEIIAGNFRALEIWSAVAVIYLIITLVLSFILRRLERRMKIL 219
|
|
| HisM |
COG0765 |
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ... |
1-218 |
5.76e-83 |
|
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440528 [Multi-domain] Cd Length: 218 Bit Score: 245.75 E-value: 5.76e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523047 1 MQFDWSAIWPAIPLLLEGAKMTLWISVLGLVGGLIIGLVAGFARSFGGWIANHIALVFIEIIRGTPIVVQVMFIYFALPM 80
Cdd:COG0765 1 MFFDFSVLLDYLPLLLEGLLVTLLLTVLAIVLGLVLGLLLALARLSPNPVLRWLATAYVEFFRGTPLLVQLFFIYFGLPL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523047 81 AfnDLRIDPFTAAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSKRETIRHVILPLALRRMLPPLGNQWIISIK 160
Cdd:COG0765 81 L--GIDLSPFVAAVIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILPQALRIILPPLGNEFISLLK 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 490523047 161 DTSLFIVIGVAELTRQGQEIIAGNFRALEIWSAVAVIYLIITLVLSFVLRRLERRMKI 218
Cdd:COG0765 159 DTSLVSVIGVPELTRAAQQIASRTFRPFEVYLVAALIYLVLTLPLSLLARRLERRLAR 216
|
|
| ectoine_ehuD |
TIGR03003 |
ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are ... |
3-216 |
1.64e-40 |
|
ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons.
Pssm-ID: 132048 [Multi-domain] Cd Length: 212 Bit Score: 137.68 E-value: 1.64e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523047 3 FDWSAIWPAIPLLLEGAKMTLWISVLGLVGGLIIGLV-AGFARSFGGWIANHIALVfIEIIRGTPIVVQVMFIYFALPMA 81
Cdd:TIGR03003 1 WDWEFVRQILPTLIEGLKITILATALGFAIAAVLGLVfAILRRSAPTPISWPTSFV-VEFIRGTPLLVQLYFLYYVLPDI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523047 82 fnDLRIDPFTAAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSKRETIRHVILPLALRRMLPPLGNQWIISIKD 161
Cdd:TIGR03003 80 --GIRLPALVAGVLGLGLHYATYAAEVYRAGIEAVPRGQWEAATALNLTARQTYRHIILPQAIPPIIPALGNYLVAMFKE 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 490523047 162 TSLFIVIGVAELTRQGQEIIAGNFRALEIWSAVAVIYLIITLVLSFVLRRLERRM 216
Cdd:TIGR03003 158 TPVLSAITVLELMNQAKSIGNSTFRYLEPMTLVGVFFLILSIISVFFLRRLEARL 212
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
19-207 |
1.91e-19 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 81.94 E-value: 1.91e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523047 19 AKMTLWISVLGLVGGLIIGLVAGFARSFGGWIANHIALVFIEIIRGTPIVVQVMFIYFALPMAFN-DLRIDPFTAAVVTI 97
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGwGILPGLGLPALILA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523047 98 MINSGAYIAEITRGAVLSIHKGFREAGLALGLSKRETIRHVILPLALRRMLPPLGNQWIISIKDTSLFIVIGVAELTRQG 177
Cdd:cd06261 81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160
|
170 180 190
....*....|....*....|....*....|
gi 490523047 178 QEIIAGNFRALEIWSAVAVIYLIITLVLSF 207
Cdd:cd06261 161 TGLLLIFAILFPGDLGVAAAVALILLLLSL 190
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
33-218 |
1.42e-13 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 66.17 E-value: 1.42e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523047 33 GLIIGLVAGFARsfgGWIANHIALVFIEIIRGTPIVVQVMFIYFAlpmAFNDLRIDPFTAAVVTIMINSGAYIAEITRGA 112
Cdd:pfam00528 1 GIPLGIIAALRR---GRRLDRLLRPLIDLLQALPSFVLAILLVVI---AILSILGHGILPAIILALLGWAGYARLIRRAA 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523047 113 VLSIHKGFREAGLALGLSKRETIRHVILPLALRRMLPPLGNQWIISIKDTSLFIVI----GVAELTRQGQEIIAGNFrAL 188
Cdd:pfam00528 75 LRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgswpGLGLLLIEAILGYDYPE-IQ 153
|
170 180 190
....*....|....*....|....*....|
gi 490523047 189 EIWSAVAVIYLIITLVLSFVLRRLERRMKI 218
Cdd:pfam00528 154 GPVLAAALILLLLNLLVDILQRLLDPRVRK 183
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| glnP |
PRK09494 |
glutamine ABC transporter permease protein; Reviewed |
1-219 |
2.14e-141 |
|
glutamine ABC transporter permease protein; Reviewed
Pssm-ID: 181907 [Multi-domain] Cd Length: 219 Bit Score: 393.65 E-value: 2.14e-141
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523047 1 MQFDWSAIWPAIPLLLEGAKMTLWISVLGLVGGLIIGLVAGFARSFGGWIANHIALVFIEIIRGTPIVVQVMFIYFALPM 80
Cdd:PRK09494 1 MQFDWSAIWPAIPLLLEGAKMTLWISVLGLAGGLVIGLLAGFARAYGGWIANHIALVFIELIRGTPIVVQVMFIYFALPM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523047 81 AFNDLRIDPFTAAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSKRETIRHVILPLALRRMLPPLGNQWIISIK 160
Cdd:PRK09494 81 AFNDLRIDPFTAAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSRRETLRYVIGPLALRRMLPPLGNQWIISIK 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 490523047 161 DTSLFIVIGVAELTRQGQEIIAGNFRALEIWSAVAVIYLIITLVLSFVLRRLERRMKIL 219
Cdd:PRK09494 161 DTSLFIVIGVAELTRQGQEIIAGNFRALEIWSAVAVIYLIITLVLSFILRRLERRMKIL 219
|
|
| HisM |
COG0765 |
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ... |
1-218 |
5.76e-83 |
|
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440528 [Multi-domain] Cd Length: 218 Bit Score: 245.75 E-value: 5.76e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523047 1 MQFDWSAIWPAIPLLLEGAKMTLWISVLGLVGGLIIGLVAGFARSFGGWIANHIALVFIEIIRGTPIVVQVMFIYFALPM 80
Cdd:COG0765 1 MFFDFSVLLDYLPLLLEGLLVTLLLTVLAIVLGLVLGLLLALARLSPNPVLRWLATAYVEFFRGTPLLVQLFFIYFGLPL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523047 81 AfnDLRIDPFTAAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSKRETIRHVILPLALRRMLPPLGNQWIISIK 160
Cdd:COG0765 81 L--GIDLSPFVAAVIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILPQALRIILPPLGNEFISLLK 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 490523047 161 DTSLFIVIGVAELTRQGQEIIAGNFRALEIWSAVAVIYLIITLVLSFVLRRLERRMKI 218
Cdd:COG0765 159 DTSLVSVIGVPELTRAAQQIASRTFRPFEVYLVAALIYLVLTLPLSLLARRLERRLAR 216
|
|
| ArtQ |
COG4215 |
ABC-type arginine transport system, permease component [Amino acid transport and metabolism]; |
13-215 |
6.92e-54 |
|
ABC-type arginine transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443361 [Multi-domain] Cd Length: 238 Bit Score: 172.62 E-value: 6.92e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523047 13 PLLLEGAKMTLWISVLGLVGGLIIGLVAGFARSFGGWIANHIALVFIEIIRGTPIVVQVMFIYFALPMAFNDLR------ 86
Cdd:COG4215 16 PALLAGALVTLELALLSLLLGLVLGLLGALAKLSGNRPLRWLATGYTTVVRGVPDLLLILLLYFGGQILLNALAdlfgyd 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523047 87 ----IDPFTAAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSKRETIRHVILPLALRRMLPPLGNQWIISIKDT 162
Cdd:COG4215 96 gfieINPFVAGVLALGFVFGAYATEVFRGAFLAVPKGQIEAARAYGMSRWQVFRRILLPQMWRYALPGLGNNWLVLLKDT 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 490523047 163 SLFIVIGVAELTRQGQEIIAGNFRALEIWSAVAVIYLIITLVLSFVLRRLERR 215
Cdd:COG4215 176 ALVSVIGLVDLVRQAQEAAGSTREPFTFYLAAALIYLALTTVSELVLARLERR 228
|
|
| ArtM |
COG4160 |
ABC-type arginine/histidine transport system, permease component [Amino acid transport and ... |
3-216 |
6.95e-54 |
|
ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443325 [Multi-domain] Cd Length: 229 Bit Score: 172.20 E-value: 6.95e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523047 3 FDWSAIWPAIPLLLEGAKMTLWISVLGLVGGLIIGLVAGFARSFGGWIANHIALVFIEIIRGTPIVVQVMFIYFALPMaF 82
Cdd:COG4160 1 MDLDLLFEYLPLLLSGLPLTLQLLALSLLLGFLLAVPLALARASGNRLLRWPARGYIYVFRGTPLLVQLFLIYYGLGQ-F 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523047 83 NDLR--------IDPFTAAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSKRETIRHVILPLALRRMLPPLGNQ 154
Cdd:COG4160 80 EWVReswlwpllRDPWFCALLALTLNTAAYTAEIFRGAIRAVPKGEIEAARALGMSRWQTFRRIILPSALRRALPAYSNE 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490523047 155 WIISIKDTSLFIVIGVAELTRQGQEIIAGNFRALEIWSAVAVIYLIITLVLSFVLRRLERRM 216
Cdd:COG4160 160 VILMLKATALASTITVMDLTGVARRIYSRTYDPFEPFLIAALIYLVITFLLTRLFRLLERRL 221
|
|
| PRK15100 |
PRK15100 |
cystine ABC transporter permease; |
13-216 |
5.77e-45 |
|
cystine ABC transporter permease;
Pssm-ID: 185055 [Multi-domain] Cd Length: 220 Bit Score: 149.13 E-value: 5.77e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523047 13 PLLLEGAKMTLWISVLGLVGGLIIGLVAGFARSFGGWIANHIALVFIEIIRGTPIVVQVMFIYFALPMAfnDLRIDPFTA 92
Cdd:PRK15100 13 PFLLKGAGYTLQLSIGGMFFGLLLGFILALMRLSPIWPVRWLARFYVSIFRGTPLIAQLFMIYYGLPQF--GIELDPIPA 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523047 93 AVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSKRETIRHVILPLALRRMLPPLGNQWIISIKDTSLFIVIGVAE 172
Cdd:PRK15100 91 AMIGLSLNTAAYAAETLRAAISSIDKGQWEAAASIGMTRWQTLRRAILPQAARTALPPLSNSFISLVKDTSLAATIQVPE 170
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 490523047 173 LTRQGQEIIAGNFRALEIWSAVAVIYLIITLVLSFVLRRLERRM 216
Cdd:PRK15100 171 LFRQAQLITSRTLEVFTMYLAASLIYWIMATVLSALQNRFENQL 214
|
|
| ectoine_ehuD |
TIGR03003 |
ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are ... |
3-216 |
1.64e-40 |
|
ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons.
Pssm-ID: 132048 [Multi-domain] Cd Length: 212 Bit Score: 137.68 E-value: 1.64e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523047 3 FDWSAIWPAIPLLLEGAKMTLWISVLGLVGGLIIGLV-AGFARSFGGWIANHIALVfIEIIRGTPIVVQVMFIYFALPMA 81
Cdd:TIGR03003 1 WDWEFVRQILPTLIEGLKITILATALGFAIAAVLGLVfAILRRSAPTPISWPTSFV-VEFIRGTPLLVQLYFLYYVLPDI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523047 82 fnDLRIDPFTAAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSKRETIRHVILPLALRRMLPPLGNQWIISIKD 161
Cdd:TIGR03003 80 --GIRLPALVAGVLGLGLHYATYAAEVYRAGIEAVPRGQWEAATALNLTARQTYRHIILPQAIPPIIPALGNYLVAMFKE 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 490523047 162 TSLFIVIGVAELTRQGQEIIAGNFRALEIWSAVAVIYLIITLVLSFVLRRLERRM 216
Cdd:TIGR03003 158 TPVLSAITVLELMNQAKSIGNSTFRYLEPMTLVGVFFLILSIISVFFLRRLEARL 212
|
|
| ectoine_ehuC |
TIGR03004 |
ectoine/hydroxyectoine ABC transporter, permease protein EhuC; Members of this family are ... |
12-217 |
1.32e-39 |
|
ectoine/hydroxyectoine ABC transporter, permease protein EhuC; Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons. Permease subunits EhuC and EhuD are homologous.
Pssm-ID: 132049 [Multi-domain] Cd Length: 214 Bit Score: 135.36 E-value: 1.32e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523047 12 IPLLLEGAKMTLWISVLGLVGGLIIGLVAGFARSFGGWIANHIALVFIEIIRGTPIVVQVMFIYFALPMAfnDLRIDPFT 91
Cdd:TIGR03004 4 LPLLLQGAWVTMQITLAGSVLATVLAFFAGLGRVSGGPILRTVALCYIEVFRGTSLLVQLFWFYFVLPLI--GLSLDPVT 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523047 92 AAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSKRETIRHVILPLALRRMLPPLGNQWIISIKDTSLFIVIGVA 171
Cdd:TIGR03004 82 TGVMVLGLHAGAYGAEIVRGALSSVSVQQLEACRALNFTRFQTLRRISLPQALVEMMPAFGNLAIELLKLTSLVSLISLA 161
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 490523047 172 ELTRQGQEIIAGNFRALEIWSAVAVIYLIITLVLSFVLRRLERRMK 217
Cdd:TIGR03004 162 DLTFAAQSIRNLTLDTLSIFAITLLCYFVMALIIMLIMRVLERVVR 207
|
|
| PRK11123 |
PRK11123 |
arginine ABC transporter permease ArtQ; |
15-215 |
1.93e-33 |
|
arginine ABC transporter permease ArtQ;
Pssm-ID: 182979 [Multi-domain] Cd Length: 238 Bit Score: 120.17 E-value: 1.93e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523047 15 LLEGAKMTLWISVLGLVGGLIIGLVagfarsFGGWIANHIALV------FIEIIRGTPIVVQVMFIYF------------ 76
Cdd:PRK11123 7 LASAAGMTVGLAVCALIVGLALAML------FAVWESAKWRPVawpgtaLVTLLRGLPEILVVLFIYFgssqllltlsdg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523047 77 ----------ALPMAFNDLRIDPFTAAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSKRETIRHVILPLALRR 146
Cdd:PRK11123 81 ftlnlgfvqiPVQMDIENFEVSPFLCGVIALSLLYAAYASQTLRGALKAVPVGQWESGQALGLSKSAIFFRLVMPQMWRH 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490523047 147 MLPPLGNQWIISIKDTSLFIVIGVAELTRQGQEIIAGNFRALEIWSAVAVIYLIITLVLSFVLRRLERR 215
Cdd:PRK11123 161 ALPGLGNQWLVLLKDTALVSLISVNDLMLQTKSIATRTQEPFTWYIIAAAIYLVITLISQYILKRIELR 229
|
|
| HEQRo_perm_3TM |
TIGR01726 |
amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; This ... |
11-111 |
1.44e-27 |
|
amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; This model represents one of several classes of multiple membrane spanning regions found immediately N-terminal to the domain described by pfam00528, binding-protein-dependent transport systems inner membrane component. The region covered by this model generally is predicted to contain three transmembrane helices. Substrate specificities attributed to members of this family include histidine, arginine, glutamine, glutamate, and (in Agrobacterium) the opines octopine and nopaline. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 130787 [Multi-domain] Cd Length: 99 Bit Score: 100.68 E-value: 1.44e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523047 11 AIPLLLEGAKMTLWISVLGLVGGLIIGLVAGFARSFGGWIANHIALVFIEIIRGTPIVVQVMFIYFALPMAFndLRIDPF 90
Cdd:TIGR01726 1 NLPFLLKGLLLTLLLSVLSILLGLVLGLLLALLRLSGNRPLRWIATVYVELFRGTPLLVQLFFIYFGLPLIG--IRLSPL 78
|
90 100
....*....|....*....|.
gi 490523047 91 TAAVVTIMINSGAYIAEITRG 111
Cdd:TIGR01726 79 TAAVIALTLFYGAYLAEIFRG 99
|
|
| artM |
PRK11122 |
arginine ABC transporter permease ArtM; |
12-215 |
4.90e-26 |
|
arginine ABC transporter permease ArtM;
Pssm-ID: 182978 [Multi-domain] Cd Length: 222 Bit Score: 100.42 E-value: 4.90e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523047 12 IPLLLEGAKMTLWISVLGLVGGLIIGLVAGFARSFGGWIANHIALVFIEIIRGTPIVVQVMFIYFAlPMAFNDLRIDPFT 91
Cdd:PRK11122 5 LPELLKGLHTSLTLTVASLLVALVLALIFTIILTLKTPVLVWLVRGYITLFTGTPLLVQIFLIYYG-PGQFPWLQEYPWL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523047 92 ---------AAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSKRETIRhVILPLALRRMLPPLGNQWIISIKDT 162
Cdd:PRK11122 84 whllsqpwlCAMLALALNSAAYSTQLFYGAVRAIPEGQWQSCAALGMSKKQTLR-ILLPYAFKRALSSYSNEVVLVFKST 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 490523047 163 SLFIVIGVAELTRQGQEIIAGNFRALeIWSAVAVIYLIITLVLSFVLRRLERR 215
Cdd:PRK11122 163 SLAYTITLMDVMGYSQLLYGRTYDVM-VFGAAGIIYLVVNGLLTLLMRLIERK 214
|
|
| PRK15107 |
PRK15107 |
glutamate/aspartate ABC transporter permease GltK; |
2-215 |
8.06e-24 |
|
glutamate/aspartate ABC transporter permease GltK;
Pssm-ID: 185062 [Multi-domain] Cd Length: 224 Bit Score: 94.51 E-value: 8.06e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523047 2 QFDWSAIWPAIPLLLEGAKMTLWISVLGLVGGLIIGLVAGFARSFGGWIANHIALVFIEIIRGTPIVVQVMFIYFALP-M 80
Cdd:PRK15107 3 EFDWSSIVPSLPYLLDGLVITLKITVTAVVIGILWGTILAVMRLSSFKPVAWFAKAYVNVFRSIPLVMVLLWFYLIVPgF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523047 81 AFNDLRIDPFT-----AAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSKRETIRHVILPLALRRMLPPLGNQW 155
Cdd:PRK15107 83 LQNVLGLSPKTdirliSAMVAFSMFEAAYYSEIIRAGIQSISRGQSSAALALGMTHWQSMKLIILPQAFRAMVPLLLTQG 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523047 156 IISIKDTSLFIVIGVAELTRQGQEIIAGNFRALEIWSAVAVIYLIITLVLSFVLRRLERR 215
Cdd:PRK15107 163 IVLFQDTSLVYVLSLADFFRTASTIGERDGTQVEMILFAGFVYFVISLSASLLVSYLKKR 222
|
|
| PRK15135 |
PRK15135 |
histidine ABC transporter permease HisQ; |
14-215 |
2.06e-23 |
|
histidine ABC transporter permease HisQ;
Pssm-ID: 185089 [Multi-domain] Cd Length: 228 Bit Score: 93.70 E-value: 2.06e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523047 14 LLLEGAKMTLWISVLGLVGGLIIGLVAGFARSFGGWIANHIALVFIEIIRGTPIVVQVMFIYFALPMAFNDLR------- 86
Cdd:PRK15135 8 VILQGALVTLELALSSVVLAVIIGLIGAGGKLSQNRLLGLIFEGYTTLIRGVPDLVLMLLIFYGLQIALNSVTealgvgq 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523047 87 --IDPFTAAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSKRETIRHVILPLALRRMLPPLGNQWIISIKDTSL 164
Cdd:PRK15135 88 idIDPMVAGIITLGFIYGAYFTETFRGAFMAVPKGHIEAATAFGFTRGQVFRRIMFPAMMRYALPGIGNNWQVILKATAL 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 490523047 165 FIVIGVAELTRQGQEIIAGNFRALEIWSAVAVIYLIITLVLSFVLRRLERR 215
Cdd:PRK15135 168 VSLLGLEDVVKATQLAGKSTWEPFYFAIVCGVIYLVFTTVSNGVLLWLERR 218
|
|
| PRK15069 |
PRK15069 |
histidine ABC transporter permease HisM; |
16-215 |
3.15e-22 |
|
histidine ABC transporter permease HisM;
Pssm-ID: 185029 [Multi-domain] Cd Length: 234 Bit Score: 90.49 E-value: 3.15e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523047 16 LEGAKMTLWISVLGLVGGLIIGLVAGFAR-SFGGWIANHIALvFIEIIRGTPIVVQVMFIYFALpMAFNDLRIDPFTAA- 93
Cdd:PRK15069 20 FTGLAITLWLLVASVVIGFVLAVPLAIARvSSNKWIRFPVWL-YTYVFRGTPLYVQLLVFYTGM-YSLEIVRGTDLLDAf 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523047 94 --------VVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSKRETIRHVILPLALRRMLPPLGNQWIISIKDTSLF 165
Cdd:PRK15069 98 frsglnctILAFTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGMSTFKLYRRIILPSALRRALPAYSNEVILMLHATTLA 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 490523047 166 IVIGVAELTRQGQEIIAGNFRALEIWSAVAVIYLIITLVLSFVLRRLERR 215
Cdd:PRK15069 178 FTATVPDILKIARDINSATYQPFQAFGIAAVLYLIISFVLISLFRRAERR 227
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
19-207 |
1.91e-19 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 81.94 E-value: 1.91e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523047 19 AKMTLWISVLGLVGGLIIGLVAGFARSFGGWIANHIALVFIEIIRGTPIVVQVMFIYFALPMAFN-DLRIDPFTAAVVTI 97
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGwGILPGLGLPALILA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523047 98 MINSGAYIAEITRGAVLSIHKGFREAGLALGLSKRETIRHVILPLALRRMLPPLGNQWIISIKDTSLFIVIGVAELTRQG 177
Cdd:cd06261 81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160
|
170 180 190
....*....|....*....|....*....|
gi 490523047 178 QEIIAGNFRALEIWSAVAVIYLIITLVLSF 207
Cdd:cd06261 161 TGLLLIFAILFPGDLGVAAAVALILLLLSL 190
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
33-218 |
1.42e-13 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 66.17 E-value: 1.42e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523047 33 GLIIGLVAGFARsfgGWIANHIALVFIEIIRGTPIVVQVMFIYFAlpmAFNDLRIDPFTAAVVTIMINSGAYIAEITRGA 112
Cdd:pfam00528 1 GIPLGIIAALRR---GRRLDRLLRPLIDLLQALPSFVLAILLVVI---AILSILGHGILPAIILALLGWAGYARLIRRAA 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523047 113 VLSIHKGFREAGLALGLSKRETIRHVILPLALRRMLPPLGNQWIISIKDTSLFIVI----GVAELTRQGQEIIAGNFrAL 188
Cdd:pfam00528 75 LRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgswpGLGLLLIEAILGYDYPE-IQ 153
|
170 180 190
....*....|....*....|....*....|
gi 490523047 189 EIWSAVAVIYLIITLVLSFVLRRLERRMKI 218
Cdd:pfam00528 154 GPVLAAALILLLLNLLVDILQRLLDPRVRK 183
|
|
| PstA |
COG0581 |
ABC-type phosphate transport system, permease component [Inorganic ion transport and ... |
22-148 |
1.74e-06 |
|
ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440346 [Multi-domain] Cd Length: 259 Bit Score: 47.34 E-value: 1.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523047 22 TLWISVLGLVGGLIIGLVAG-----FARsfGGWIANhIALVFIEIIRGTPIVVQVMFIY--FALPMAFNdlridpFT--A 92
Cdd:COG0581 46 TLLLVLLATLIAVPLGVLAAiylaeYAR--GGRLAR-LIRFAIDVLAGVPSIVYGLFGYalFVLTLGLG------FSllA 116
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 490523047 93 AVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSKRETIRHVILPLALRRML 148
Cdd:COG0581 117 GALALALLMLPVVIRTTEEALRLVPNSLREASYALGATKWQTIRKVVLPAALPGIL 172
|
|
| TauC |
COG0600 |
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ... |
13-216 |
1.77e-06 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440365 [Multi-domain] Cd Length: 254 Bit Score: 47.06 E-value: 1.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523047 13 PLLLEGAKMTLWISVLGLVGGLIIGLVAGFArsFGGW-IANHIALVFIEIIRGTPIVVQVMFIYFALPMAFndlridpfT 91
Cdd:COG0600 57 GELWEHLLASLLRVLLGFALAALLGVPLGLL--LGLSrLLRRLLDPLLVFLRPIPPLALAPLLILWFGIGE--------A 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523047 92 AAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSKRETIRHVILPLALRRMLPPLGNQWIISikdtslFIVIGVA 171
Cdd:COG0600 127 SKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTGLRIALGLA------WIGLVVA 200
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 490523047 172 ELTRQ----GQEII--AGNFRALEIWSAVAVIyLIITLVLSFVLRRLERRM 216
Cdd:COG0600 201 ELLGAssglGYLILdaRQLLDTDLVFAAILVI-GLLGLLLDLLLRLLERRL 250
|
|
| 3a0107s02c |
TIGR00974 |
phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of ... |
22-145 |
3.85e-06 |
|
phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]
Pssm-ID: 273373 Cd Length: 271 Bit Score: 46.46 E-value: 3.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523047 22 TLWISVLGLVGGLIIGLVAG-----FARsfGGWIANHIALVfIEIIRGTPIVVQVMFIY--FALPMAFNDLRIDPFTAAV 94
Cdd:TIGR00974 59 TLLLTLLAIVIAVPLGIGAAiylaeYAN--GSRFTKIIRFA-VDILAGVPSIVVGLFGYgfFVLTYLGGGFSLLAGALAL 135
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 490523047 95 VTIMInsgAYIAEITRGAVLSIHKGFREAGLALGLSKRETIRHVILPLALR 145
Cdd:TIGR00974 136 ALLIL---PVIIRTTEEALKAVPKDLREASLALGATKWQTIFKVVLPAALP 183
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
13-215 |
3.61e-05 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 44.00 E-value: 3.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523047 13 PLLLEGAKMTLWISVLGLVGGLIIGLVAGFARSFGGWIANHIALVFIEIIRGTPIVVqvmfIYFALPMAFNDLRIDPFTA 92
Cdd:COG1178 334 PSLLRALLNSLLLALLAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVPGIV----LGLGLLLLFNRPLPLLLYG 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523047 93 AVVTIMINSG----AYIAEITRGAVLSIHKGFREAGLALGLSKRETIRHVILPLALRRMLPPLGNQWIISIKDTSLFIVI 168
Cdd:COG1178 410 TLAILVLAYVvrflPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLL 489
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 490523047 169 GVAEL----TRQGQEIIAGNFRALeiwSAVAVIYLIITLVLSFVLRRLERR 215
Cdd:COG1178 490 RPPGFetlaVLIYQLASSGRYGEA---AALALLLVLVSLLPVLLLERLLGR 537
|
|
| PstC |
COG0573 |
ABC-type phosphate transport system, permease component [Inorganic ion transport and ... |
90-217 |
1.03e-04 |
|
ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440338 [Multi-domain] Cd Length: 303 Bit Score: 42.38 E-value: 1.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523047 90 FTAAVV-TIMINSgaYIAEITRGAVLSIHKGFREAGLALGLSKRETIRHVILP-----------LALRR---------ML 148
Cdd:COG0573 157 LTAGIVlAIMILP--TITSLSRDALRAVPRSLREAALALGATRWETIRKVVLPaarsgiiaaviLGLGRalgetmavlMV 234
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 490523047 149 ppLGNQWIISikdTSLF---------IVIGVAELTRQGQEiiagnFRALeiwSAVAVIYLIITLVLSFVLRRLERRMK 217
Cdd:COG0573 235 --AGNAPQIP---FSLFdpgrtltalIALEFGEAPFGSLH-----YSAL---FALGLVLFVITLLVNLLARLIVRRYR 299
|
|
| PhnE |
COG3639 |
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport ... |
4-148 |
1.28e-04 |
|
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 442856 [Multi-domain] Cd Length: 244 Bit Score: 41.60 E-value: 1.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523047 4 DWSAIWPAIPLLLEGAKMTLWISVLGLVGGLIIGLVAgfARSFGGW-IANHIALVFIEIIRGTP-IVVQVMFIYFALPMA 81
Cdd:COG3639 42 DWSYLPDLLSALLETLAIALLGTLLGAVLALPLAFLA--ARNLAPNpWVRLLARRLLNVLRAIPeLVWALIFVAAVGLGP 119
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490523047 82 FndlridpftAAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSKRETIRHVILPLALRRML 148
Cdd:COG3639 120 F---------AGVLALAIHTIGFLGKLFAEAIEEIDPGPVEALRATGASRLQVIRYGVLPQVLPQFL 177
|
|
| phosphate_pstC |
TIGR02138 |
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ... |
90-145 |
3.03e-03 |
|
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]
Pssm-ID: 273992 [Multi-domain] Cd Length: 295 Bit Score: 37.63 E-value: 3.03e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 490523047 90 FTAAVV-TIMINSgaYIAEITRGAVLSIHKGFREAGLALGLSKRETIRHVILPLALR 145
Cdd:TIGR02138 152 LTAGIVlAIMILP--TIASISRDALRAVPRSYKEASYALGATKWETIRRVILPAARS 206
|
|
| |
