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Conserved domains on  [gi|490522189|ref|WP_004387619|]
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MULTISPECIES: dipeptide ABC transporter permease DppB [Cronobacter]

Protein Classification

dipeptide ABC transporter permease DppB( domain architecture ID 10793500)

dipeptide ABC transporter permease DppB is part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK10914 PRK10914
dipeptide ABC transporter permease DppB;
1-339 0e+00

dipeptide ABC transporter permease DppB;


:

Pssm-ID: 182834 [Multi-domain]  Cd Length: 339  Bit Score: 635.70  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189   1 MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGISPERHAQLLAELGLDKPLWEQYLHYIWGVLHGDLGL 80
Cdd:PRK10914   1 MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGISPERHAQLLAELGLDKPMWQQYLHYIWGVMHGDLGI 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189  81 SLKSRLPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVQL 160
Cdd:PRK10914  81 SLKSRIPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHW 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189 161 NLTPVSGRVSDMVFLDDTNPLTGFMLIDTAIWGEEGNFIDALAHMILPAIVLGTIPLAVIVRMTRSAMLEVLGEDYIRTA 240
Cdd:PRK10914 161 NLTPVSGRVSDMVFLDDSNPLTGFMLIDTAIWGEDGNFIDAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTA 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189 241 RAKGLTRMRVIIIHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILV 320
Cdd:PRK10914 241 RAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILV 320
                        330
                 ....*....|....*....
gi 490522189 321 NLLVDLLYGVVNPRIRHKK 339
Cdd:PRK10914 321 NLLVDLLYGVVNPRIRHKK 339
 
Name Accession Description Interval E-value
PRK10914 PRK10914
dipeptide ABC transporter permease DppB;
1-339 0e+00

dipeptide ABC transporter permease DppB;


Pssm-ID: 182834 [Multi-domain]  Cd Length: 339  Bit Score: 635.70  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189   1 MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGISPERHAQLLAELGLDKPLWEQYLHYIWGVLHGDLGL 80
Cdd:PRK10914   1 MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGISPERHAQLLAELGLDKPMWQQYLHYIWGVMHGDLGI 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189  81 SLKSRLPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVQL 160
Cdd:PRK10914  81 SLKSRIPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHW 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189 161 NLTPVSGRVSDMVFLDDTNPLTGFMLIDTAIWGEEGNFIDALAHMILPAIVLGTIPLAVIVRMTRSAMLEVLGEDYIRTA 240
Cdd:PRK10914 161 NLTPVSGRVSDMVFLDDSNPLTGFMLIDTAIWGEDGNFIDAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTA 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189 241 RAKGLTRMRVIIIHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILV 320
Cdd:PRK10914 241 RAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILV 320
                        330
                 ....*....|....*....
gi 490522189 321 NLLVDLLYGVVNPRIRHKK 339
Cdd:PRK10914 321 NLLVDLLYGVVNPRIRHKK 339
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
1-337 2.81e-147

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 417.55  E-value: 2.81e-147
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189   1 MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERgISPERHAQLLAELGLDKPLWEQYLHYIWGVLHGDLGL 80
Cdd:COG0601    1 MLRYILRRLLQAIPVLLGVSTLVFLLLRLLPGDPAAALLGPR-ATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGT 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189  81 SLKSRLPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVQL 160
Cdd:COG0601   80 SFVYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAVKL 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189 161 NLTPVSGRVSDMVFlddtnpltgfmlidtaiwgeegnFIDALAHMILPAIVLGTIPLAVIVRMTRSAMLEVLGEDYIRTA 240
Cdd:COG0601  160 GWLPVSGRVSPWED-----------------------FLDALRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTA 216
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189 241 RAKGLTRMRVIIIHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILV 320
Cdd:COG0601  217 RAKGLSERRVLLRHALRNALIPVVTVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLV 296
                        330
                 ....*....|....*..
gi 490522189 321 NLLVDLLYGVVNPRIRH 337
Cdd:COG0601  297 NLLVDLLYALLDPRIRL 313
nickel_nikB TIGR02789
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of ...
1-339 1.10e-82

nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 131836 [Multi-domain]  Cd Length: 314  Bit Score: 253.14  E-value: 1.10e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189    1 MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDP--VMIMAGERGISPERHAQLLAELGLDKPLWEQYLHYIWGVLHGDL 78
Cdd:TIGR02789   1 MLNYILRRLLLLIPVVLAASLLAFILIHLGPSDPaeDYLRLSHIPPTDEAIADMRHSLGLDQPLYVQYFHWLWNALHLDF 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189   79 GLSLKSRLPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSV 158
Cdd:TIGR02789  81 GISYISDRPVLDEIARSLPATLELAGFALVIVVLVSVPLGILAARYRDRLPDHAVRFIIFLGVSIPNFWLAFLLVWGFSV 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189  159 QLNLTPVSGRvsdmvflddtnpltgfmlidtAIWGeegnfidalaHMILPAIVLGTIPLAVIVRMTRSAMLEVLGEDYIR 238
Cdd:TIGR02789 161 YLNLLPTNGA---------------------GTWQ----------HLVLPAVTLALMSVSIYARLLRASMLDNMQERYVT 209
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189  239 TARAKGLTRMRVIIIHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMII 318
Cdd:TIGR02789 210 YARVRGIKERWVIRRHILRNAILPMITALGMHIGELLGGTFVIENIFSWPGVGRYAISAIFNRDYPVIQCYTLLMGLLFV 289
                         330       340
                  ....*....|....*....|.
gi 490522189  319 LVNLLVDLLYGVVNPRIRHKK 339
Cdd:TIGR02789 290 FCNLIVDLFQALLDPRIRRKE 310
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
114-337 1.10e-28

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 109.31  E-value: 1.10e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189  114 GIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLvsvqlnltpvsgrvsdmvflddtnpltgfmlidtaiwg 193
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVI-------------------------------------- 42
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189  194 eegNFIDALAHMILPAIVLGTIPLAVIVRMTRSAMLEVLGEDYIRTARAKGLTRMRVIIIHALRNAMLPVVTVIGLQVGT 273
Cdd:pfam00528  43 ---AILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGG 119
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 490522189  274 LLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPRIRH 337
Cdd:pfam00528 120 ALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPRVRK 183
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
96-326 2.05e-18

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 81.94  E-value: 2.05e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189  96 FKATLELGVCAMIFAVAVGIPVGVLAAVKRGSIfDHTAVGLALTGYSMPIFWWGMMLIMLVSVQLNltpvsgrvsdmvfl 175
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKL-DRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLG-------------- 65
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189 176 ddtnpltgfmlidtaiwgeegnfIDALAHMILPAIVLGTIPLAVIVRMTRSAMLEVLGEDYIRTARAKGLTRMRVIIIHA 255
Cdd:cd06261   66 -----------------------WGILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRII 122
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 490522189 256 LRNAMLPVVTVIGLQVGTLLAGAILTETIFS----WPGLGRWLIDALQrrdypvvQGGVLLVATMIILVNLLVDL 326
Cdd:cd06261  123 LPLALPPILTGLVLAFARALGEFALVSFLGGgeapGPGTGLLLIFAIL-------FPGDLGVAAAVALILLLLSL 190
 
Name Accession Description Interval E-value
PRK10914 PRK10914
dipeptide ABC transporter permease DppB;
1-339 0e+00

dipeptide ABC transporter permease DppB;


Pssm-ID: 182834 [Multi-domain]  Cd Length: 339  Bit Score: 635.70  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189   1 MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGISPERHAQLLAELGLDKPLWEQYLHYIWGVLHGDLGL 80
Cdd:PRK10914   1 MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGISPERHAQLLAELGLDKPMWQQYLHYIWGVMHGDLGI 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189  81 SLKSRLPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVQL 160
Cdd:PRK10914  81 SLKSRIPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHW 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189 161 NLTPVSGRVSDMVFLDDTNPLTGFMLIDTAIWGEEGNFIDALAHMILPAIVLGTIPLAVIVRMTRSAMLEVLGEDYIRTA 240
Cdd:PRK10914 161 NLTPVSGRVSDMVFLDDSNPLTGFMLIDTAIWGEDGNFIDAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTA 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189 241 RAKGLTRMRVIIIHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILV 320
Cdd:PRK10914 241 RAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILV 320
                        330
                 ....*....|....*....
gi 490522189 321 NLLVDLLYGVVNPRIRHKK 339
Cdd:PRK10914 321 NLLVDLLYGVVNPRIRHKK 339
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
1-337 2.81e-147

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 417.55  E-value: 2.81e-147
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189   1 MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERgISPERHAQLLAELGLDKPLWEQYLHYIWGVLHGDLGL 80
Cdd:COG0601    1 MLRYILRRLLQAIPVLLGVSTLVFLLLRLLPGDPAAALLGPR-ATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGT 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189  81 SLKSRLPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVQL 160
Cdd:COG0601   80 SFVYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAVKL 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189 161 NLTPVSGRVSDMVFlddtnpltgfmlidtaiwgeegnFIDALAHMILPAIVLGTIPLAVIVRMTRSAMLEVLGEDYIRTA 240
Cdd:COG0601  160 GWLPVSGRVSPWED-----------------------FLDALRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTA 216
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189 241 RAKGLTRMRVIIIHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILV 320
Cdd:COG0601  217 RAKGLSERRVLLRHALRNALIPVVTVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLV 296
                        330
                 ....*....|....*..
gi 490522189 321 NLLVDLLYGVVNPRIRH 337
Cdd:COG0601  297 NLLVDLLYALLDPRIRL 313
SapB COG4168
ABC-type antimicrobial peptide export system, permease component SapB [Defense mechanisms];
1-337 3.13e-96

ABC-type antimicrobial peptide export system, permease component SapB [Defense mechanisms];


Pssm-ID: 443329 [Multi-domain]  Cd Length: 321  Bit Score: 287.89  E-value: 3.13e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189   1 MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMimagergisperhaqllaelglDKPLWEQYLHYIWGVLHGDLGL 80
Cdd:COG4168    1 MLIYLLRRLNLLLITLLILSLISFSLLYRDPLNPLS----------------------DASLFSGYLFYLQNLLQGDFGI 58
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189  81 SLKSRLPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVQL 160
Cdd:COG4168   59 SSINGEPILEQLLTVFPATLELCFLAFLLALLIGIPLGILAGIYRGKWLDKLISSLSLLGFSIPVFWLALLLILFFSLNL 138
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189 161 NLTPVSGRVSdmvFLDDTNPLTGFMLIDtaIWGEEGN-----FIDALAHMILPAIVLGTIPLAVIVRMTRSAMLEVLGED 235
Cdd:COG4168  139 GWLPVSGRYN---LLYEIPPVTGFALID--AWLSDSPyrlkaIQSALQHLILPTLVLAVAPTTEVIRLTRQSTEEVMNQN 213
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189 236 YIRTARAKGLTRMRVIIIHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVAT 315
Cdd:COG4168  214 YIKAAATRGLSRFTIIRRHVLRNALPPIIPQLGLQFSTMLTLAMITEVVFSWPGIGRWLINAIRQQDYAAISAGVIVIGT 293
                        330       340
                 ....*....|....*....|..
gi 490522189 316 MIILVNLLVDLLYGVVNPRIRH 337
Cdd:COG4168  294 FVIIVNILSDILGALLNPLKRK 315
PRK15081 PRK15081
glutathione ABC transporter permease GsiC; Provisional
1-338 3.92e-95

glutathione ABC transporter permease GsiC; Provisional


Pssm-ID: 185039 [Multi-domain]  Cd Length: 306  Bit Score: 284.68  E-value: 3.92e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189   1 MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGergisPERHAQLLA----ELGLDKPLWEQYLHYIWGVLHG 76
Cdd:PRK15081   1 MLNYVIKRLLGLIPTLLIVAVLVFLFVHLLPGDPARLAAG-----PEADAQVVAlvrqQLGLDQPLPHQFWHYISNALQG 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189  77 DLGLSLKSRLPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLV 156
Cdd:PRK15081  76 DFGTSMVSRRPVSEEIASRFMPTLWLTITSMVWAVIFGMAIGIASAVWRNRWPDRLGMTLAVSGISFPAFALGMLLMQVF 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189 157 SVQLNLTPVSGRvsdmvflddtnpltgfmlidtaiwgeegnfiDALAHMILPAIVLGTIPLAVIVRMTRSAMLEVLGEDY 236
Cdd:PRK15081 156 SVELGWLPTVGA-------------------------------DSWQHYILPSLTLGAAVAAVMARFTRASFVEVLSEDY 204
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189 237 IRTARAKGLTRMRVIIIHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATM 316
Cdd:PRK15081 205 MRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEVLLFSLE 284
                        330       340
                 ....*....|....*....|..
gi 490522189 317 IILVNLLVDLLYGVVNPRIRHK 338
Cdd:PRK15081 285 FILINLVVDVLYAAINPAIRYK 306
nickel_nikB TIGR02789
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of ...
1-339 1.10e-82

nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 131836 [Multi-domain]  Cd Length: 314  Bit Score: 253.14  E-value: 1.10e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189    1 MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDP--VMIMAGERGISPERHAQLLAELGLDKPLWEQYLHYIWGVLHGDL 78
Cdd:TIGR02789   1 MLNYILRRLLLLIPVVLAASLLAFILIHLGPSDPaeDYLRLSHIPPTDEAIADMRHSLGLDQPLYVQYFHWLWNALHLDF 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189   79 GLSLKSRLPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSV 158
Cdd:TIGR02789  81 GISYISDRPVLDEIARSLPATLELAGFALVIVVLVSVPLGILAARYRDRLPDHAVRFIIFLGVSIPNFWLAFLLVWGFSV 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189  159 QLNLTPVSGRvsdmvflddtnpltgfmlidtAIWGeegnfidalaHMILPAIVLGTIPLAVIVRMTRSAMLEVLGEDYIR 238
Cdd:TIGR02789 161 YLNLLPTNGA---------------------GTWQ----------HLVLPAVTLALMSVSIYARLLRASMLDNMQERYVT 209
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189  239 TARAKGLTRMRVIIIHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMII 318
Cdd:TIGR02789 210 YARVRGIKERWVIRRHILRNAILPMITALGMHIGELLGGTFVIENIFSWPGVGRYAISAIFNRDYPVIQCYTLLMGLLFV 289
                         330       340
                  ....*....|....*....|.
gi 490522189  319 LVNLLVDLLYGVVNPRIRHKK 339
Cdd:TIGR02789 290 FCNLIVDLFQALLDPRIRRKE 310
PRK10352 PRK10352
nickel transporter permease NikB; Provisional
1-337 2.55e-75

nickel transporter permease NikB; Provisional


Pssm-ID: 182400 [Multi-domain]  Cd Length: 314  Bit Score: 234.59  E-value: 2.55e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189   1 MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGISPERHAQLLAE--LGLDKPLWEQYLHYIWGVLHGDL 78
Cdd:PRK10352   1 MLRYILRRLLLLIPMLLAASVIIFLMLRLGTGDPALDYLRLSNLPPTPEMLASTRtmLGLDQPLYVQYGTWLWKALHLDF 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189  79 GLSLKSRLPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSV 158
Cdd:PRK10352  81 GISFATQRPVLDDLLNFLPATLELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSV 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189 159 QLNLTPVSGRvsdmvflddtnpltgfmlidtaiwgeegnfiDALAHMILPAIVLGTIPLAVIVRMTRSAMLEVLGEDYIR 238
Cdd:PRK10352 161 YLQWLPAMGY-------------------------------GGWQHIILPAVSIAFMSLAINARLLRASMLEVAGQRHVT 209
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189 239 TARAKGLTRMRVIIIHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMII 318
Cdd:PRK10352 210 WARLRGLSERQVERRHILRNASLPMITAVGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLMMVVVFV 289
                        330
                 ....*....|....*....
gi 490522189 319 LVNLLVDLLYGVVNPRIRH 337
Cdd:PRK10352 290 VCNLIVDLLNAALDPRIRR 308
PRK15110 PRK15110
peptide ABC transporter permease SapB;
1-338 1.67e-67

peptide ABC transporter permease SapB;


Pssm-ID: 185065 [Multi-domain]  Cd Length: 321  Bit Score: 214.55  E-value: 1.67e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189   1 MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVmimageRGISperhaqllaelgldkpLWEQYLHYIWGVLHGDLGL 80
Cdd:PRK15110   1 MIIFTLRRLLLLIVTLFLLTLVGFSLSYFTPHAPL------QGAS----------------LWDAWVFWFNGLLHWDFGV 58
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189  81 SLKSRLPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVQL 160
Cdd:PRK15110  59 SSINGQPISEQLKEVFPATMELCILAFGFALLVGIPVGIIAGVTRHKWQDNLISALALLGFSIPVFWLALLLTLFFSLTL 138
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189 161 NLTPVSGRVSdmvFLDDTNPLTGFMLIDT----AIWGEEgNFIDALAHMILPAIVLGTIPLAVIVRMTRSAMLEVLGEDY 236
Cdd:PRK15110 139 GWLPVSGRFD---LLYEVKPVTGFALIDAwlsdSPWRDE-MIMSAIRHMILPVITLAVAPTTEVIRLMRISTIEVYDQNY 214
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189 237 IRTARAKGLTRMRVIIIHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATM 316
Cdd:PRK15110 215 VKAAATRGLSRFTILRRHVLHNALPPVIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLINAIRQQDYAAISAGVMVVGSL 294
                        330       340
                 ....*....|....*....|..
gi 490522189 317 IILVNLLVDLLYGVVNPrIRHK 338
Cdd:PRK15110 295 VIIVNVLSDILGAMANP-LKHK 315
oppB PRK09471
oligopeptide ABC transporter permease OppB;
1-337 2.13e-64

oligopeptide ABC transporter permease OppB;


Pssm-ID: 181886 [Multi-domain]  Cd Length: 306  Bit Score: 206.07  E-value: 2.13e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189   1 MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPvmiMAGERGISPERHAQLLAELGLDKPLWEQYLHYIWGVLHGDLGL 80
Cdd:PRK09471   1 MLKFILRRCLEAIPTLFILITISFFMMRLAPGSP---FTGERTLPPEVMANIEAKYHLNDPIMTQYFSYLKQLAHGDFGP 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189  81 SLKSRLPVWDEFVPR-FKATLELGVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVQ 159
Cdd:PRK09471  78 SFKYKDYSVNDLVASsFPVSAKLGAAAFFLAVILGVSAGVIAALKQNTKWDYTVMGFAMTGVVIPSFVVAPLLVLIFAIT 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189 160 LNLTPVSGrvsdmvflddtnpltgfmlidtaiWGEegnfiDALAHMILPAIVLGTIPLAVIVRMTRSAMLEVLGEDYIRT 239
Cdd:PRK09471 158 LHWLPGGG------------------------WNG-----GALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRT 208
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189 240 ARAKGLTRMRVIIIHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIIL 319
Cdd:PRK09471 209 ARAKGLPMRRIILRHALKPALLPVLSYMGPAFVGIITGSMVIETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGALTIL 288
                        330
                 ....*....|....*...
gi 490522189 320 VNLLVDLLYGVVNPRIRH 337
Cdd:PRK09471 289 FNAIVDVLYAVIDPKIRY 306
YejB COG4174
ABC-type microcin C transport system, permease component YejB [Secondary metabolites ...
1-335 1.28e-59

ABC-type microcin C transport system, permease component YejB [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 443333 [Multi-domain]  Cd Length: 363  Bit Score: 195.40  E-value: 1.28e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189   1 MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPV--MIMA--------------------------------GERGISP 46
Cdd:COG4174    1 MGAYILRRLLLMIPTLLGIMLINFVIVQFAPGGPVeqVIAQlqgtgggatgrisggggdagggaaagggskyrGARGLDP 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189  47 ERHAQLLAELGLDKPLWEQYLHYIWGVLHGDLGLSLKSRLPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVLAAVKRG 126
Cdd:COG4174   81 EFIAELEKQYGFDKPAHERFLLMLKNYLRFDFGESYFRDISVIDLILEKLPVSISLGLWSTLLTYLISIPLGIRKAVRDG 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189 127 SIFDHTAVGLALTGYSMPIFWWGMMLIMLVS--VQLNLTPVSGRVSDmvflddtnpltGFmliDTAIWGeeGNFIDALAH 204
Cdd:COG4174  161 SRFDVWTSTVIIVGYAIPGFLFAILLIVLFAggSYFDWFPLRGLTSD-----------NW---DQLSWW--GKILDYLWH 224
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189 205 MILP--AIVLGTipLAVIVRMTRSAMLEVLGEDYIRTARAKGLTRMRVIIIHALRNAMLPVVTVI-GLQVGTLLAGAILT 281
Cdd:COG4174  225 LTLPvtAMVIGG--FATLTLLTKNSFLDEIRKQYVLTARAKGLSERRVLYGHVFRNAMLIVIAGFpAAFIGAFFTGSLLI 302
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 490522189 282 ETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPRI 335
Cdd:COG4174  303 ETIFSLDGLGLLGFEAVVNRDYPVVFGTLYIFTLIGLVLKLISDLTYVLVDPRI 356
PRK15133 PRK15133
microcin C ABC transporter permease YejB; Provisional
1-335 1.78e-39

microcin C ABC transporter permease YejB; Provisional


Pssm-ID: 185087 [Multi-domain]  Cd Length: 364  Bit Score: 142.96  E-value: 1.78e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189   1 MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPV----------------------MIMA---------------GERG 43
Cdd:PRK15133   1 MGAYLIRRLLLVIPTLWAIITINFFIVQIAPGGPVdqaiaaiefgqagglpgaggegVRAShaqtgvgnisdsnyrGGRG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189  44 ISPERHAQLLAELGLDKPLWEQYLHYIWGVLHGDLGLSLKSRLPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVLAAV 123
Cdd:PRK15133  81 LDPEVIAEITHRYGFDKPLHERYFKMLWDYIRFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAV 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189 124 KRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVS--VQLNLTPVSGRVSDMvflddtnpltgfmlIDTAIWgeEGNFIDA 201
Cdd:PRK15133 161 RNGSRFDVWSSAFIIIGYAIPAFLFAILLIVFFAggSYFDLFPLRGLVSAN--------------FDSLPW--YQKITDY 224
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189 202 LAHMILP--AIVLGTipLAVIVRMTRSAMLEVLGEDYIRTARAKGLTRMRVIIIHALRNAMLPVV-----TVIGLqvgtL 274
Cdd:PRK15133 225 LWHITLPvlATVIGG--FAALTMLTKNSFLDEIRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIagfpaTFISM----F 298
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490522189 275 LAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPRI 335
Cdd:PRK15133 299 FTGSLLIEVMFSLNGLGLLGYEATVSRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVDPRI 359
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
114-337 1.10e-28

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 109.31  E-value: 1.10e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189  114 GIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLvsvqlnltpvsgrvsdmvflddtnpltgfmlidtaiwg 193
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVI-------------------------------------- 42
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189  194 eegNFIDALAHMILPAIVLGTIPLAVIVRMTRSAMLEVLGEDYIRTARAKGLTRMRVIIIHALRNAMLPVVTVIGLQVGT 273
Cdd:pfam00528  43 ---AILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGG 119
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 490522189  274 LLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPRIRH 337
Cdd:pfam00528 120 ALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPRVRK 183
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
96-326 2.05e-18

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 81.94  E-value: 2.05e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189  96 FKATLELGVCAMIFAVAVGIPVGVLAAVKRGSIfDHTAVGLALTGYSMPIFWWGMMLIMLVSVQLNltpvsgrvsdmvfl 175
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKL-DRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLG-------------- 65
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189 176 ddtnpltgfmlidtaiwgeegnfIDALAHMILPAIVLGTIPLAVIVRMTRSAMLEVLGEDYIRTARAKGLTRMRVIIIHA 255
Cdd:cd06261   66 -----------------------WGILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRII 122
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 490522189 256 LRNAMLPVVTVIGLQVGTLLAGAILTETIFS----WPGLGRWLIDALQrrdypvvQGGVLLVATMIILVNLLVDL 326
Cdd:cd06261  123 LPLALPPILTGLVLAFARALGEFALVSFLGGgeapGPGTGLLLIFAIL-------FPGDLGVAAAVALILLLLSL 190
BPD_transp_1_N pfam19300
Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal ...
1-102 7.46e-17

Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal transmembrane domain of the Binding-protein-dependent transport system inner membrane component.


Pssm-ID: 437132 [Multi-domain]  Cd Length: 114  Bit Score: 75.34  E-value: 7.46e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189    1 MLQFILRR-LGLVIPTFIgITLLTFAFVHMIPGDPVMIMAGERgISPERHAQLLAELGLDKPLWEQYLHYIWGVLHGD-- 77
Cdd:pfam19300   1 MLRFLVRRtLGAVVILLI-ISAVTFFLFYAIPRDPARLACGKN-CTPETLALIRHNLGLDKPIPVQYWHFLSGIFAGRdf 78
                          90       100       110
                  ....*....|....*....|....*....|....*
gi 490522189   78 ----------LGLSLKSRLPVWDEFVPRFKATLEL 102
Cdd:pfam19300  79 gavghcpapcLGYSFANNEPVWDTIMDRFPTTLSL 113
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
99-291 3.90e-08

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 53.58  E-value: 3.90e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189  99 TLELGVCAMIFAVAVGIPVGVLAAVKRGsIFDHTAVGLALTGYSMPifwwGMMLIMLVSVQLNltpvsgrvsdmvflddt 178
Cdd:COG1173   81 SLLVGLLAVLIALVIGVLLGLLAGYFGG-WVDAVLMRLVDVLLAFP----SLLLAIALVAVLG----------------- 138
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189 179 nplTGFMLIdtaiwgeegnfidalahmilpAIVLGTIPLAVIVRMTRSAMLEVLGEDYIRTARAKGLTRMRVIIIHALRN 258
Cdd:COG1173  139 ---PGLLNV---------------------ILALGLTGWPGYARLVRAQVLSLREREYVEAARALGASPLRIIFRHILPN 194
                        170       180       190
                 ....*....|....*....|....*....|...
gi 490522189 259 AMLPVVTVIGLQVGTllagAILTETIFSWPGLG 291
Cdd:COG1173  195 VLPPLIVQATLGIAS----AILAEAGLSFLGLG 223
PRK09881 PRK09881
D,D-dipeptide ABC transporter permease;
201-291 1.13e-03

D,D-dipeptide ABC transporter permease;


Pssm-ID: 182131 [Multi-domain]  Cd Length: 296  Bit Score: 40.19  E-value: 1.13e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522189 201 ALAHMILPAIVLGTIPLAVI-----VRMTRSAMLEVLGEDYIRTARAKGLTRMRVIIIHALRNAMLPVVTVIGLQVGtll 275
Cdd:PRK09881 147 ALAAALGPSLFNAMLAIAIVripfyVRLARGQALVVRQYTYVQAAKTFGASRWHLISWHILRNSLPPLIVQASLDIG--- 223
                         90
                 ....*....|....*.
gi 490522189 276 aGAILTETIFSWPGLG 291
Cdd:PRK09881 224 -SAILMAATLGFIGLG 238
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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