NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|490522102|ref|WP_004387534|]
View 

maltose ABC transporter permease MalF [Cronobacter sakazakii]

Protein Classification

sugar transporter permease( domain architecture ID 11485143)

sugar transporter permease similar to MalF, which is one of the two integral inner membrane subunits (MalFG) of the maltose ABC transport complex (MalFGKE); the MalFG subunits form a heterodimeric translocation pore with a dimer of the ATPase subunit (MalK)

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
malF PRK10999
maltose ABC transporter permease MalF;
1-514 0e+00

maltose ABC transporter permease MalF;


:

Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 1038.77  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102   1 MDVIKKKHWWQSDALKWSAIGLLGLLVGYLVVLMYAQGEYLFAIMTLILSSIGLYIFANRRAYAWRYVYPGLAGMGLFVL 80
Cdd:PRK10999   4 MDVIKKKHWWQSDALKWSVLGLLGLLVGYLVVLMYAQGEYLFAILTLILSSLGLYIFANRKAYAWRYVYPGLAGMGLFVL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102  81 FPLACTIAIAFTNYSSTNQLTQERAREVLMDRKYQAGESYTFGLYPAGDQWRLALTDGASGNYYVSEPFKF--GGEQKLK 158
Cdd:PRK10999  84 FPLVCTIAIAFTNYSSTNQLTFERAQSVLLDRTYQAGKTYNFGLYPAGDEWQLALTDGETGKNYLSEPFSLeaGGEQKLQ 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102 159 LSAAPALPEGERASLRIITQNRQALNQLTAELPDKSQLVMSSLRQFSGTRPLYTLADDG-TLTNNQSGVKYRPNNDIGFY 237
Cdd:PRK10999 164 LKETDALPEGERAPLRVITQNRQALSQITAVLPDGNKLRMSSLRQFSGTKPLYTLDDDGtTLTNNQSGVKYRPNNDIGFY 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102 238 QAVNADGQWGDEKLSPGYTVTIGWDNFLRVFADEGIQKPFMAIFVWTVVFAALTVVLTVAVGMVLACLVQWESLKGKAIY 317
Cdd:PRK10999 244 QSINADGNWGGEKLSPGFTVTIGWKNFTRVFTDEGIQKPFIAIFIWTVVFSLLTVVLTVAVGMVLACLVQWEALKGKAVY 323

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102 318 RVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFGIKPAWFTDPTTARTMIIIVNTWLGYPYMMILCMGLLKAIPD 397
Cdd:PRK10999 324 RVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFGIKPAWFSDPTLAKTMILIVNTWLGYPYMMILCMGLLKAIPD 403

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102 398 DLYEASAMDGAGPFQNFFKITFPLLIKPLTPLMIASFAFNFNNFVLILLLTNGGPDRIGTTTPAGYTDLLVSYTWRIAFE 477
Cdd:PRK10999 404 DLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDMIGTTTPAGYTDLLVSYTYRIAFE 483

                        490       500       510
                 ....*....|....*....|....*....|....*..
gi 490522102 478 GGGGQDFGLAAAIATLIFLLVGALAVVNLKATRIKFD 514
Cdd:PRK10999 484 GGGGQDFGLAAAIATLIFLLVGALAILNLKATKMKFD 520
 
Name Accession Description Interval E-value
malF PRK10999
maltose ABC transporter permease MalF;
1-514 0e+00

maltose ABC transporter permease MalF;


Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 1038.77  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102   1 MDVIKKKHWWQSDALKWSAIGLLGLLVGYLVVLMYAQGEYLFAIMTLILSSIGLYIFANRRAYAWRYVYPGLAGMGLFVL 80
Cdd:PRK10999   4 MDVIKKKHWWQSDALKWSVLGLLGLLVGYLVVLMYAQGEYLFAILTLILSSLGLYIFANRKAYAWRYVYPGLAGMGLFVL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102  81 FPLACTIAIAFTNYSSTNQLTQERAREVLMDRKYQAGESYTFGLYPAGDQWRLALTDGASGNYYVSEPFKF--GGEQKLK 158
Cdd:PRK10999  84 FPLVCTIAIAFTNYSSTNQLTFERAQSVLLDRTYQAGKTYNFGLYPAGDEWQLALTDGETGKNYLSEPFSLeaGGEQKLQ 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102 159 LSAAPALPEGERASLRIITQNRQALNQLTAELPDKSQLVMSSLRQFSGTRPLYTLADDG-TLTNNQSGVKYRPNNDIGFY 237
Cdd:PRK10999 164 LKETDALPEGERAPLRVITQNRQALSQITAVLPDGNKLRMSSLRQFSGTKPLYTLDDDGtTLTNNQSGVKYRPNNDIGFY 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102 238 QAVNADGQWGDEKLSPGYTVTIGWDNFLRVFADEGIQKPFMAIFVWTVVFAALTVVLTVAVGMVLACLVQWESLKGKAIY 317
Cdd:PRK10999 244 QSINADGNWGGEKLSPGFTVTIGWKNFTRVFTDEGIQKPFIAIFIWTVVFSLLTVVLTVAVGMVLACLVQWEALKGKAVY 323

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102 318 RVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFGIKPAWFTDPTTARTMIIIVNTWLGYPYMMILCMGLLKAIPD 397
Cdd:PRK10999 324 RVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFGIKPAWFSDPTLAKTMILIVNTWLGYPYMMILCMGLLKAIPD 403

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102 398 DLYEASAMDGAGPFQNFFKITFPLLIKPLTPLMIASFAFNFNNFVLILLLTNGGPDRIGTTTPAGYTDLLVSYTWRIAFE 477
Cdd:PRK10999 404 DLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDMIGTTTPAGYTDLLVSYTYRIAFE 483

                        490       500       510
                 ....*....|....*....|....*....|....*..
gi 490522102 478 GGGGQDFGLAAAIATLIFLLVGALAVVNLKATRIKFD 514
Cdd:PRK10999 484 GGGGQDFGLAAAIATLIFLLVGALAILNLKATKMKFD 520
MalF_P2 pfam14785
Maltose transport system permease protein MalF P2 domain; This is the second periplasmic ...
 100-260 4.61e-90

Maltose transport system permease protein MalF P2 domain; This is the second periplasmic domain (P2 domain) of the maltose transport system permease protein MalF.


Pssm-ID: 434209  Cd Length: 164  Bit Score: 272.59  E-value: 4.61e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102  100 LTQERAREVLMDRKYQAGESYTFGLYPAGDQWRLALTDGASGNYYVSEPFKF--GGEQKLKLSAAPALPEGERASLRIIT 177
Cdd:pfam14785   1 LSFERAQSVLLSRTYQSGESYPFTLYPSGDGYRLALEDGESGQLLVSEPFTLdgAGEQKLALEPAESLPTGEKAPLREIT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102  178 QNRQALNQLTAELPDKSQLVMSSLRQFSGTRPLYTLADDG-TLTNNQSGVKYRPNNDIGFYQAVNADGQWGDEKLSPGYT 256
Cdd:pfam14785  81 QNRQALSQLVLVLPDGEELRMSGLRQFAAVKPLYTLQEDGeTLTNNQTGEIYRPNMEIGFYQAVDEDGEWVGERVSPGFT 160


                  ....
gi 490522102  257 VTIG 260
Cdd:pfam14785 161 VTIG 164
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
259-510 3.57e-64

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 210.76  E-value: 3.57e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102 259 IGWDNFLRVFADEGiqkpFMAIFVWTVVFAALTVVLTVAVGMVLACLVqWESLKGKAIYRVLLILPYAVPSFISILIFKG 338
Cdd:COG1175   60 VGLDNYARLFTDPR----FWNALGNTLLFTVVSVPLQLVLGLLLALLL-NRKLRGRGFFRTLFFLPWVISPVVVALIWKW 134

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102 339 LFNQSFGEINMMLSALFGIKPAWFTDPTTARTMIIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKIT 418
Cdd:COG1175  135 LFNPDYGLLNALLGALGLEPINWLGDPSLALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRIT 214

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102 419 FPLLIKPLTPLMIASFAFNFNNFVLILLLTNGGpdrigtttPAGYTDLLVSYTWRIAFEgggGQDFGLAAAIATLIFLLV 498
Cdd:COG1175  215 LPLLRPTILFVLVLSTIGALQVFDLVYVLTGGG--------PGNSTTTLVLYIYQTAFQ---QFDFGYASAIAVVLFLII 283

                        250
                 ....*....|..
gi 490522102 499 GALAVVNLKATR 510
Cdd:COG1175  284 LVLTLLQLRLLR 295
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 281-498 1.91e-21

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 91.96  E-value: 1.91e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102 281 FVWTVVFAALTVVLTVAVGMVLACLVQWESLKGKAIYRVLLILPYAVPSFISILIfkglfnqsfgeinmmLSALFGIKPA 360
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLL---------------LVLLFGVLLG 65

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102 361 WFTDPTTARTMIIIVNTWLGyPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITFPLLIKPLTPLMIASFAFNFNN 440
Cdd:cd06261   66 WGILPGLGLPALILALLLIA-PFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGE 144

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 490522102 441 FVLILLLTNGGPDRIGTTTpagytdllvsytwRIAFEGGGGQDFGLAAAIATLIFLLV 498
Cdd:cd06261  145 FALVSFLGGGEAPGPGTGL-------------LLIFAILFPGDLGVAAAVALILLLLS 189
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 259-501 2.25e-08

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 56.61  E-value: 2.25e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102  259 IGWDNFLRVFADEGiqkpFMAIFVWTVVFAALTVVLTVAVGMVLACLVQWESLKGKAIYRVLLILPYAVPSFIS----IL 334
Cdd:TIGR03262  38 IGLANFAEYFATPG----LLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPGKGAFRLVALLPLLAPSLLPaislIY 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102  335 IF--KGLFNQSFGeinmmlsaLFGIKPAWftdpttartMIIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQ 412
Cdd:TIGR03262 114 LFgnQGLLKGLLG--------GFSIYGFW---------GIVIGEVFYTFPHALMILVTALSLADGRLYEAARAMGASPWR 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102  413 NFFKITFPLLIKPLTPLMIASFAFNFNNFvlillltnGGPDRIGTTTPAGYTDLlvsYTWRIafeggGGQDFGLAAAIAT 492
Cdd:TIGR03262 177 TFFTVTLPGAKYGLISAAFVVFTLVITDF--------GVPKVIGGDYNVLATDI---YKQVI-----GQQNFPMGAVVGV 240


                  ....*....
gi 490522102  493 LifLLVGAL 501
Cdd:TIGR03262 241 L--LLLPAL 247
 
Name Accession Description Interval E-value
malF PRK10999
maltose ABC transporter permease MalF;
1-514 0e+00

maltose ABC transporter permease MalF;


Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 1038.77  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102   1 MDVIKKKHWWQSDALKWSAIGLLGLLVGYLVVLMYAQGEYLFAIMTLILSSIGLYIFANRRAYAWRYVYPGLAGMGLFVL 80
Cdd:PRK10999   4 MDVIKKKHWWQSDALKWSVLGLLGLLVGYLVVLMYAQGEYLFAILTLILSSLGLYIFANRKAYAWRYVYPGLAGMGLFVL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102  81 FPLACTIAIAFTNYSSTNQLTQERAREVLMDRKYQAGESYTFGLYPAGDQWRLALTDGASGNYYVSEPFKF--GGEQKLK 158
Cdd:PRK10999  84 FPLVCTIAIAFTNYSSTNQLTFERAQSVLLDRTYQAGKTYNFGLYPAGDEWQLALTDGETGKNYLSEPFSLeaGGEQKLQ 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102 159 LSAAPALPEGERASLRIITQNRQALNQLTAELPDKSQLVMSSLRQFSGTRPLYTLADDG-TLTNNQSGVKYRPNNDIGFY 237
Cdd:PRK10999 164 LKETDALPEGERAPLRVITQNRQALSQITAVLPDGNKLRMSSLRQFSGTKPLYTLDDDGtTLTNNQSGVKYRPNNDIGFY 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102 238 QAVNADGQWGDEKLSPGYTVTIGWDNFLRVFADEGIQKPFMAIFVWTVVFAALTVVLTVAVGMVLACLVQWESLKGKAIY 317
Cdd:PRK10999 244 QSINADGNWGGEKLSPGFTVTIGWKNFTRVFTDEGIQKPFIAIFIWTVVFSLLTVVLTVAVGMVLACLVQWEALKGKAVY 323

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102 318 RVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFGIKPAWFTDPTTARTMIIIVNTWLGYPYMMILCMGLLKAIPD 397
Cdd:PRK10999 324 RVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFGIKPAWFSDPTLAKTMILIVNTWLGYPYMMILCMGLLKAIPD 403

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102 398 DLYEASAMDGAGPFQNFFKITFPLLIKPLTPLMIASFAFNFNNFVLILLLTNGGPDRIGTTTPAGYTDLLVSYTWRIAFE 477
Cdd:PRK10999 404 DLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDMIGTTTPAGYTDLLVSYTYRIAFE 483

                        490       500       510
                 ....*....|....*....|....*....|....*..
gi 490522102 478 GGGGQDFGLAAAIATLIFLLVGALAVVNLKATRIKFD 514
Cdd:PRK10999 484 GGGGQDFGLAAAIATLIFLLVGALAILNLKATKMKFD 520
MalF_P2 pfam14785
Maltose transport system permease protein MalF P2 domain; This is the second periplasmic ...
 100-260 4.61e-90

Maltose transport system permease protein MalF P2 domain; This is the second periplasmic domain (P2 domain) of the maltose transport system permease protein MalF.


Pssm-ID: 434209  Cd Length: 164  Bit Score: 272.59  E-value: 4.61e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102  100 LTQERAREVLMDRKYQAGESYTFGLYPAGDQWRLALTDGASGNYYVSEPFKF--GGEQKLKLSAAPALPEGERASLRIIT 177
Cdd:pfam14785   1 LSFERAQSVLLSRTYQSGESYPFTLYPSGDGYRLALEDGESGQLLVSEPFTLdgAGEQKLALEPAESLPTGEKAPLREIT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102  178 QNRQALNQLTAELPDKSQLVMSSLRQFSGTRPLYTLADDG-TLTNNQSGVKYRPNNDIGFYQAVNADGQWGDEKLSPGYT 256
Cdd:pfam14785  81 QNRQALSQLVLVLPDGEELRMSGLRQFAAVKPLYTLQEDGeTLTNNQTGEIYRPNMEIGFYQAVDEDGEWVGERVSPGFT 160


                  ....
gi 490522102  257 VTIG 260
Cdd:pfam14785 161 VTIG 164
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
259-510 3.57e-64

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 210.76  E-value: 3.57e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102 259 IGWDNFLRVFADEGiqkpFMAIFVWTVVFAALTVVLTVAVGMVLACLVqWESLKGKAIYRVLLILPYAVPSFISILIFKG 338
Cdd:COG1175   60 VGLDNYARLFTDPR----FWNALGNTLLFTVVSVPLQLVLGLLLALLL-NRKLRGRGFFRTLFFLPWVISPVVVALIWKW 134

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102 339 LFNQSFGEINMMLSALFGIKPAWFTDPTTARTMIIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKIT 418
Cdd:COG1175  135 LFNPDYGLLNALLGALGLEPINWLGDPSLALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRIT 214

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102 419 FPLLIKPLTPLMIASFAFNFNNFVLILLLTNGGpdrigtttPAGYTDLLVSYTWRIAFEgggGQDFGLAAAIATLIFLLV 498
Cdd:COG1175  215 LPLLRPTILFVLVLSTIGALQVFDLVYVLTGGG--------PGNSTTTLVLYIYQTAFQ---QFDFGYASAIAVVLFLII 283

                        250
                 ....*....|..
gi 490522102 499 GALAVVNLKATR 510
Cdd:COG1175  284 LVLTLLQLRLLR 295
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
257-510 4.61e-28

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 117.57  E-value: 4.61e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102 257 VTIGWDNFLRVFADEGiqkpFMAIFVWTVVFAALTVVLTVAVGMVLACLVQWESLKGKAIYRVLLILPYAVPSFISILIF 336
Cdd:COG1178   36 FTDGLANFWALLSDPY----LWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDFPGRRLLRWLLLLPLALPPYVVALAW 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102 337 KGLFNQSfGEINMMLSALFGIKPAWFtdpttaRTM--IIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNF 414
Cdd:COG1178  112 IALFGPN-GLLNTLLRALFGLEPPDI------YGLggIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAF 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102 415 FKITFPLLIKPLTPLMIASFAFNFNNFVLILLLtnGGpdRIGTTTPAGYTdllvsyTWRiafeggGGQDFGLAAAIATLI 494
Cdd:COG1178  185 RRVTLPLLRPAIAAGALLVFLLCLADFGTPLVL--GG--GYTTLTTAIYQ------AWL------GDFDLGAAAALALVL 248

                        250
                 ....*....|....*.
gi 490522102 495 FLLVGALAVVNLKATR 510
Cdd:COG1178  249 LLLVLLLLLLERRLRR 264
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
259-507 6.61e-22

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 95.66  E-value: 6.61e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102 259 IGWDNFLRVFADEgiqkPFMAIFVWTVVFAALTVVLTVAVGMVLACLVQWeSLKGKAIYRVLLILPYAVPSFISILIFKG 338
Cdd:PRK10561  39 VGLDNFVALFHDS----YYLDSFWTTIKFSTLVTVSGLLVSLFFAALVDY-VVRGSRFYQTLMLLPYAVAPAVAAVLWIF 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102 339 LFNQSFGEINMMLsALFGIKPAWFTDPTTARTMIIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKIT 418
Cdd:PRK10561 114 LFNPGRGLITHFL-AEFGYDWNHAQNSGQAMFLVVFASVWKQISYNFLFFFAALQSIPRSLVEAAAIDGAGPIRRFFKLA 192

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102 419 FPlLIKPLTPLMIA---SFAFnFNNFVLILLLTNGGPDRIGTTtpagytdllvsYTWRIAFEGGGGQDFGLAAAIATLIF 495
Cdd:PRK10561 193 LP-LIAPVSFFLLVvnlVYAF-FDTFPVIDAATSGGPVQATTT-----------LIYKIYREGFTGLDLSSSAAQSVVLM 259

                        250
                 ....*....|..
gi 490522102 496 LLVGALAVVNLK 507
Cdd:PRK10561 260 FLVIVLTVVQFR 271
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 281-498 1.91e-21

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 91.96  E-value: 1.91e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102 281 FVWTVVFAALTVVLTVAVGMVLACLVQWESLKGKAIYRVLLILPYAVPSFISILIfkglfnqsfgeinmmLSALFGIKPA 360
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLL---------------LVLLFGVLLG 65

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102 361 WFTDPTTARTMIIIVNTWLGyPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITFPLLIKPLTPLMIASFAFNFNN 440
Cdd:cd06261   66 WGILPGLGLPALILALLLIA-PFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGE 144

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 490522102 441 FVLILLLTNGGPDRIGTTTpagytdllvsytwRIAFEGGGGQDFGLAAAIATLIFLLV 498
Cdd:cd06261  145 FALVSFLGGGEAPGPGTGL-------------LLIFAILFPGDLGVAAAVALILLLLS 189
LplB COG4209
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and ...
 259-490 2.81e-20

ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 443357 [Multi-domain]  Cd Length: 316  Bit Score: 91.69  E-value: 2.81e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102 259 IGWDNFLRVFADEGiqkpFMAIFVWTVVFAALTVVLTVAVGMVLA-CLVQWESLKGKAIYRVLLILPYavpsFISIL--- 334
Cdd:COG4209   70 VGLKNFKFLFSSPD----FWRVLRNTLLISLLKLVFGFPLPIILAlLLNELRSKRFKKTVQTISYLPH----FLSWVvva 141

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102 335 -IFKGLFNQSFGEINMMLSAlFGIKP-AWFTDPTTARTMIIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQ 412
Cdd:COG4209  142 gIVYQFLSPDTGLVNQLLRA-LGGEPiNFLTEPKYFRPIYVFSGIWKEAGWGSIIYLAAITGIDPELYEAAAIDGAGRWQ 220

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102 413 NFFKITFPLLIKPLTPLMIASFAFNFN-NFVLILLLTNggpdrigtttPAGY--TDLLVSYTWRIAFEGGggqDFGLAAA 489
Cdd:COG4209  221 QIWHITLPGIRPTIVILLILNIGNILNvGFEQIYLLYN----------PLNYstSDVIDTYVYRIGLQNG---DYSYATA 287


                 .
gi 490522102 490 I 490
Cdd:COG4209  288 V 288
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 261-510 1.68e-19

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 88.24  E-value: 1.68e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102 261 WDNFLRVFADEGiqkpFMAIFVWTVVFAALTVVLTVAVGMVLACLVQWESLKGKAIYRVLLILPYAVPSFI---SILIFk 337
Cdd:COG1177   47 LRWYAELFSDPR----LLDALLNSLLIALLSTLLATVLGTPAALALARYRFRGRRLLLALLLLPLVVPGIVlgvALLLL- 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102 338 glFNQsfgeinmmlsalFGIKPAWFTdpttartmIIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKI 417
Cdd:COG1177  122 --FSA------------LGLSGGLWG--------LILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRV 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102 418 TFPLlikpLTPLMIA----SFAFNFNNFVLILLLTNGGPdrigTTTPagyTDLLVSYTWRIAFEggggqdfglAAAIATL 493
Cdd:COG1177  180 TLPL----IAPGILAgallAFTLSFDEFVITLFLAGPGV----TTLP---VYIYSMIRRGISPE---------INALSTL 239

                        250
                 ....*....|....*..
gi 490522102 494 IFLLVGALAVVNLKATR 510
Cdd:COG1177  240 LILLSLLLLLLAERLRR 256
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 254-512 2.88e-19

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 87.90  E-value: 2.88e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102 254 GYTVTIGWDNFLRVFADEGiqkpFMAIFVWTVVFAALTVVLTVAVGMVLACLVQWESLKGKAIYRVLLILPYAVPSFISI 333
Cdd:COG1176   46 GVVPGFTLENYARLFTDPL----YLKVLLRTLWIALLTTLICLLLGYPIAYFLARAPPRWRNLLLLLVILPFWTSFLVRT 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102 334 LIFKGLFNQSfGEINMMLSALFGIKPAW---FTDPTtartmIIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGP 410
Cdd:COG1176  122 YAWIVLLGRN-GLLNSLLLALGLIDEPLrllYTEFA-----VVIGLVYVYLPFMVLPLYAALEKIDPSLLEAARDLGASP 195

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102 411 FQNFFKITFPLLIKPLTPLMIASFAFNFNNFVLILLLtnGGPDR--IGTTtpagytdllvsytwrIAFEGGGGQDFGLAA 488
Cdd:COG1176  196 WQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALL--GGGKVlmIGNL---------------IYQQFLSALNWPLAA 258

                        250       260
                 ....*....|....*....|....
gi 490522102 489 AIATLIFLLVGALAVVNLKATRIK 512
Cdd:COG1176  259 ALAVVLLLIVLLVLLLYLRLLRRR 282
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
251-504 2.65e-15

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 78.28  E-value: 2.65e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102 251 LSPGYTVTIGWDNFLRVFADEGIQKPFmaifVWTVVFAALTVVLTVAVGMVLACLVQWESLKGKAIYRVLLILPYAVPSF 330
Cdd:COG1178  314 LTKALDDNLTLDNYRFVLLDPSLLRAL----LNSLLLALLAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVPGI 389

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102 331 ---ISILIFkglFNQSFGeinmmlsalfgikpawfTDPTTARTMIIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDG 407
Cdd:COG1178  390 vlgLGLLLL---FNRPLP-----------------LLLYGTLAILVLAYVVRFLPFALRSLEAALAQIDPSLEEAARSLG 449

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102 408 AGPFQNFFKITFPLLIKPLtplmIASFAFNF----NNFVLILLLTNGGpdrigtttpagyTDLLVSYTWRIAFEGgggqD 483
Cdd:COG1178  450 ASPLRTLRRVTLPLLRPGL----LAAALLVFvtsmKELSATLLLRPPG------------FETLAVLIYQLASSG----R 509

                        250       260
                 ....*....|....*....|.
gi 490522102 484 FGLAAAIATLIFLLVGALAVV 504
Cdd:COG1178  510 YGEAAALALLLVLVSLLPVLL 530
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 312-506 5.64e-13

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 67.32  E-value: 5.64e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102  312 KGKAIYRVLLILPYAVPSFISILIFkglfnqsfgeinmmlsalfgIKPAWFTDPTTARTMIIIVNTWLGYPYMMILCMGL 391
Cdd:pfam00528  15 RLDRLLRPLIDLLQALPSFVLAILL--------------------VVIAILSILGHGILPAIILALLGWAGYARLIRRAA 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102  392 LKAIPDDLYEASAMDGAGPFQNFFKITFPLLIKPLTPLMIASFAFNFNNFVLILLLTNGGPdrIGTTTPAGYTDLLVSYt 471
Cdd:pfam00528  75 LRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPG--LGLLLIEAILGYDYPE- 151

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 490522102  472 wriafegggGQDFGLAAAIATLIFLLVGALAVVNL 506
Cdd:pfam00528 152 ---------IQGPVLAAALILLLLNLLVDILQRLL 177
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 261-496 4.62e-12

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 66.66  E-value: 4.62e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102 261 WDNFLRVFADEgiqkPFMAIFVWTVVFAALTVVLTVAVGMVLACLVQWESLKGKAIYRVLLILPYAVPsFISILIfkGLF 340
Cdd:COG0395   60 LENYRAAFTDG----PFGRYLLNSLIVAVVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIP-GQVLLI--PLY 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102 341 nQSFGEINMmLSALFGIkpawftdpttartmiIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITFP 420
Cdd:COG0395  133 -LLFRQLGL-LNTYWGL---------------ILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLP 195

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490522102 421 LLIKPLTPLMIASFAFNFNNFVLILLLTNgGPDRigTTTPAGytdlLVSytwriaFEGGGGQDFGLAAAIATLIFL 496
Cdd:COG0395  196 LSKPALATVAIFTFIGAWNDFLWPLILLT-SPDL--RTLPVG----LAS------FQGQYGTDWGLLMAAAVIATL 258
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 259-501 2.25e-08

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 56.61  E-value: 2.25e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102  259 IGWDNFLRVFADEGiqkpFMAIFVWTVVFAALTVVLTVAVGMVLACLVQWESLKGKAIYRVLLILPYAVPSFIS----IL 334
Cdd:TIGR03262  38 IGLANFAEYFATPG----LLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPGKGAFRLVALLPLLAPSLLPaislIY 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102  335 IF--KGLFNQSFGeinmmlsaLFGIKPAWftdpttartMIIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQ 412
Cdd:TIGR03262 114 LFgnQGLLKGLLG--------GFSIYGFW---------GIVIGEVFYTFPHALMILVTALSLADGRLYEAARAMGASPWR 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102  413 NFFKITFPLLIKPLTPLMIASFAFNFNNFvlillltnGGPDRIGTTTPAGYTDLlvsYTWRIafeggGGQDFGLAAAIAT 492
Cdd:TIGR03262 177 TFFTVTLPGAKYGLISAAFVVFTLVITDF--------GVPKVIGGDYNVLATDI---YKQVI-----GQQNFPMGAVVGV 240


                  ....*....
gi 490522102  493 LifLLVGAL 501
Cdd:TIGR03262 241 L--LLLPAL 247
cysT CHL00187
sulfate transport protein; Provisional
 284-438 6.34e-05

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 44.62  E-value: 6.34e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102 284 TVVFAALTVVLTVAVGMVLA-CLVQWEsLKGKAIYRVLLILPYAVPSFISILIFKGLFNQSfGEINMMLSaLFGIKPAwF 362
Cdd:CHL00187  60 TLSMALIAALINGFFGLLIAwVLVRYN-FPGKRLLDAAVDLPFALPTSVAGLTLATVYGDN-GWIGHLLS-HLGIQIV-F 135

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490522102 363 TDPTTARTMIIIvntwlGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITFPllikPLTPLMIASFAFNF 438
Cdd:CHL00187 136 TKLGVLLAMIFV-----SFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFP----PLIPALLTGLALTF 202
PRK10973 PRK10973
sn-glycerol-3-phosphate ABC transporter permease UgpE;
395-449 4.74e-04

sn-glycerol-3-phosphate ABC transporter permease UgpE;


Pssm-ID: 182875 [Multi-domain]  Cd Length: 281  Bit Score: 42.03  E-value: 4.74e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 490522102 395 IPDDLYEASAMDGAGPFQNFFKITFPLLIKPLTPLMIASFAFNFNNFVLILLLTN 449
Cdd:PRK10973 169 LPDELVEAARIDGASPMRFFWDIVLPLSKTNLAALFVITFIYGWNQYLWPLLIIT 223
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
278-438 9.95e-03

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 37.81  E-value: 9.95e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102 278 MAIFVWTVVFAALTVVLTVAVGMVLACLVQWESLKGKAIYRVLLILPYAVPSFISILIFKGLFNQSfgeinmmlsalfGI 357
Cdd:PRK10971  57 VAAYKVTLLSAFVASIFNAVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVN------------GW 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522102 358 KPAWFtdpttARTMIIIVNTWLG---------YPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITFPllikPLTP 428
Cdd:PRK10971 125 YGEWL-----AKFDIKVTYTWLGiavamaftsIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLP----ELSP 195

                        170
                 ....*....|
gi 490522102 429 LMIASFAFNF 438
Cdd:PRK10971 196 ALLAGVALSF 205
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH